Wall clock time and date at job start Tue Mar 31 2020 05:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37082 * 119.99969 * 2 1 4 4 H 1.07996 * 119.99530 * 206.09080 * 3 2 1 5 5 C 1.38870 * 119.99746 * 26.08590 * 3 2 1 6 6 N 1.31480 * 120.00302 * 10.98960 * 5 3 2 7 7 Si 1.86800 * 119.99509 * 190.98638 * 5 3 2 8 8 H 1.48505 * 109.46968 * 60.00505 * 7 5 3 9 9 H 1.48500 * 109.46886 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47618 * 300.00299 * 7 5 3 11 11 C 1.34779 * 120.00116 * 179.97438 * 2 1 3 12 12 S 1.71205 * 120.00012 * 179.97438 * 11 2 1 13 13 N 1.34776 * 119.99905 * 359.97438 * 11 2 1 14 14 C 1.46500 * 119.99868 * 180.27316 * 13 11 2 15 15 C 1.50695 * 109.46871 * 179.72532 * 14 13 11 16 16 C 1.38263 * 119.99628 * 269.72357 * 15 14 13 17 17 C 1.38220 * 120.02990 * 179.77071 * 16 15 14 18 18 C 1.38244 * 120.01026 * 0.50811 * 17 16 15 19 19 C 1.38328 * 119.98359 * 359.74573 * 18 17 16 20 20 Cl 1.73600 * 120.00813 * 180.02562 * 19 18 17 21 21 C 1.38196 * 119.99616 * 90.00376 * 15 14 13 22 22 H 1.09001 * 109.47029 * 264.97633 * 1 2 3 23 23 H 1.08997 * 109.47031 * 24.97394 * 1 2 3 24 24 H 1.08997 * 109.47247 * 144.97398 * 1 2 3 25 25 H 0.96996 * 120.00212 * 180.02562 * 6 5 3 26 26 H 0.96999 * 119.99786 * 0.02562 * 13 11 2 27 27 H 1.08999 * 109.47119 * 299.72739 * 14 13 11 28 28 H 1.09001 * 109.46847 * 59.72797 * 14 13 11 29 29 H 1.08006 * 119.98247 * 0.02562 * 16 15 14 30 30 H 1.07995 * 119.99609 * 180.25878 * 17 16 15 31 31 H 1.07997 * 120.00388 * 179.77110 * 18 17 16 32 32 H 1.08005 * 120.00050 * 359.95028 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1504 1.1872 0.0000 4 1 3.1478 1.2347 -0.4113 5 6 1.5621 2.3285 0.5288 6 7 0.4475 2.2338 1.2199 7 14 2.3543 3.9984 0.2584 8 1 2.4348 4.2781 -1.1978 9 1 1.5363 5.0472 0.9189 10 1 3.7212 3.9977 0.8385 11 6 2.1389 -1.1672 0.0005 12 16 3.8509 -1.1672 -0.0001 13 7 1.4650 -2.3344 0.0016 14 6 2.1975 -3.6031 0.0082 15 6 1.2182 -4.7485 0.0148 16 6 0.7739 -5.2711 1.2153 17 6 -0.1279 -6.3185 1.2222 18 6 -0.5782 -6.8511 0.0286 19 6 -0.1300 -6.3321 -1.1727 20 17 -0.6955 -7.0000 -2.6720 21 6 0.7688 -5.2801 -1.1790 22 1 -0.3633 -0.0900 1.0237 23 1 -0.3633 0.9316 -0.4339 24 1 -0.3633 -0.8415 -0.5898 25 1 0.0364 3.0310 1.5889 26 1 0.4950 -2.3344 0.0016 27 1 2.8238 -3.6657 -0.8817 28 1 2.8245 -3.6559 0.8983 29 1 1.1286 -4.8579 2.1481 30 1 -0.4778 -6.7235 2.1602 31 1 -1.2800 -7.6719 0.0342 32 1 1.1188 -4.8743 -2.1167 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001195970367.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:19 Heat of formation + Delta-G solvation = 38.157828 kcal Electronic energy + Delta-G solvation = -17185.618241 eV Core-core repulsion = 14298.256953 eV Total energy + Delta-G solvation = -2887.361289 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.68149 -38.22252 -36.68648 -35.24451 -32.51428 -31.11418 -30.82943 -27.33767 -26.55204 -24.52469 -22.84125 -21.58958 -20.97573 -18.36885 -17.44371 -16.72574 -15.79807 -15.54927 -15.52525 -14.89189 -14.21596 -13.98453 -13.87354 -13.51535 -13.40959 -12.95204 -12.94520 -11.84062 -11.72007 -11.64816 -11.58640 -11.50970 -11.08647 -10.95728 -10.93319 -10.53551 -10.43285 -9.80182 -9.26293 -9.16529 -8.89050 -8.14178 -6.80762 -6.57719 -6.06235 -4.25373 0.93980 1.04747 1.94280 2.70332 3.10345 3.12972 3.22473 3.30072 3.55084 3.90901 4.24132 4.56702 4.64382 4.68216 4.81522 4.89593 5.09680 5.18451 5.38549 5.65113 5.78244 5.84897 6.01998 6.13278 6.15374 6.33095 6.45783 6.60777 6.69617 7.18749 7.27628 7.35160 8.12498 8.36319 8.89626 9.07867 10.26836 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.027520 B = 0.003718 C = 0.003633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.187414 B = 7530.019699 C = 7705.754495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.363 5.363 3 C -0.292 4.292 4 H 0.131 0.869 5 C 0.038 3.962 6 N -0.865 5.865 7 Si 0.944 3.056 8 H -0.268 1.268 9 H -0.282 1.282 10 H -0.263 1.263 11 C 0.473 3.527 12 S -0.759 6.759 13 N -0.714 5.714 14 C 0.184 3.816 15 C -0.086 4.086 16 C -0.095 4.095 17 C -0.110 4.110 18 C -0.110 4.110 19 C -0.038 4.038 20 Cl -0.075 7.075 21 C -0.092 4.092 22 H 0.068 0.932 23 H 0.090 0.910 24 H 0.033 0.967 25 H 0.277 0.723 26 H 0.384 0.616 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.132 0.868 31 H 0.131 0.869 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 -14.080 -1.738 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.048 5.048 3 C -0.424 4.424 4 H 0.149 0.851 5 C -0.170 4.170 6 N -0.500 5.500 7 Si 0.769 3.231 8 H -0.192 1.192 9 H -0.207 1.207 10 H -0.188 1.188 11 C 0.113 3.887 12 S -0.631 6.631 13 N -0.354 5.354 14 C 0.059 3.941 15 C -0.087 4.087 16 C -0.114 4.114 17 C -0.129 4.129 18 C -0.129 4.129 19 C -0.064 4.064 20 Cl -0.046 7.046 21 C -0.112 4.112 22 H 0.087 0.913 23 H 0.109 0.891 24 H 0.051 0.949 25 H 0.088 0.912 26 H 0.221 0.779 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.151 0.849 30 H 0.150 0.850 31 H 0.149 0.851 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -7.225 -13.914 -1.766 15.777 hybrid contribution -1.340 0.663 -0.124 1.500 sum -8.565 -13.252 -1.890 15.892 Atomic orbital electron populations 1.21868 0.80685 1.01348 1.01791 1.42911 1.05328 1.03816 1.52770 1.20384 1.02818 0.82025 1.37199 0.85113 1.25648 0.96091 1.01237 0.93983 1.70000 1.18478 1.31346 1.30159 0.85682 0.79535 0.78755 0.79170 1.19244 1.20693 1.18773 1.21289 0.93559 0.80761 0.93100 1.92452 0.93634 1.95097 1.81949 1.44272 1.07881 1.03319 1.79911 1.20120 0.91203 0.78104 1.04635 1.20140 0.98255 0.97836 0.92509 1.21323 0.96142 0.95660 0.98242 1.21131 0.97447 0.96620 0.97672 1.21069 1.00484 1.00498 0.90828 1.20912 1.00218 0.98100 0.87207 1.98370 1.88365 1.84932 1.32902 1.21079 0.96043 0.94863 0.99165 0.91338 0.89135 0.94881 0.91246 0.77936 0.89988 0.89718 0.84920 0.84964 0.85078 0.84649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.81 8.34 59.84 0.50 2.31 16 2 N -0.36 -8.73 3.01 -124.14 -0.37 -9.10 16 3 C -0.29 -7.65 8.94 -14.97 -0.13 -7.79 16 4 H 0.13 3.67 6.71 -52.49 -0.35 3.32 16 5 C 0.04 0.94 5.07 -17.47 -0.09 0.85 16 6 N -0.87 -21.15 10.85 55.49 0.60 -20.54 16 7 Si 0.94 19.60 29.57 -169.99 -5.03 14.57 16 8 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 9 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 10 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 11 C 0.47 11.14 7.66 -86.92 -0.67 10.47 16 12 S -0.76 -20.57 27.34 -107.50 -2.94 -23.51 16 13 N -0.71 -13.10 5.41 -63.21 -0.34 -13.44 16 14 C 0.18 2.93 5.25 -5.20 -0.03 2.91 16 15 C -0.09 -1.09 5.25 -104.63 -0.55 -1.64 16 16 C -0.09 -1.05 9.70 -39.58 -0.38 -1.43 16 17 C -0.11 -1.03 10.05 -39.59 -0.40 -1.43 16 18 C -0.11 -1.06 9.83 -39.55 -0.39 -1.45 16 19 C -0.04 -0.42 6.32 -39.50 -0.25 -0.67 16 20 Cl -0.07 -0.78 28.96 -51.86 -1.50 -2.28 16 21 C -0.09 -1.11 9.49 -39.55 -0.38 -1.48 16 22 H 0.07 1.42 7.84 -51.93 -0.41 1.01 16 23 H 0.09 1.92 6.82 -51.93 -0.35 1.57 16 24 H 0.03 0.56 6.64 -51.93 -0.34 0.21 16 25 H 0.28 6.40 8.31 -40.82 -0.34 6.06 16 26 H 0.38 6.27 6.31 -40.82 -0.26 6.01 16 27 H 0.08 1.40 7.94 -51.93 -0.41 0.99 16 28 H 0.08 1.45 7.93 -51.93 -0.41 1.04 16 29 H 0.13 1.38 8.06 -52.48 -0.42 0.95 16 30 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 31 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 32 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 LS Contribution 303.07 15.07 4.57 4.57 Total: -1.00 -30.06 303.07 -11.14 -41.20 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -3.37 Total: 7.87 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -2.76 Total: 0.66 kcal Atomic # 7 Polarization: -42.97 SS G_CDS: -0.11 Total: -43.09 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.57 kcal Atomic # 16 Polarization: -20.57 SS G_CDS: -2.94 Total: -23.51 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.50 Total: -2.28 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -30.06 -11.14 -41.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001195970367.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.356 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.198 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.158 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds