Wall clock time and date at job start Tue Mar 31 2020 05:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37076 * 120.00364 * 2 1 4 4 H 1.07991 * 120.00468 * 206.09523 * 3 2 1 5 5 C 1.38875 * 119.99509 * 26.08958 * 3 2 1 6 6 N 1.31486 * 120.00307 * 10.98781 * 5 3 2 7 7 Si 1.86802 * 119.99886 * 190.98466 * 5 3 2 8 8 H 1.48497 * 109.47071 * 90.00118 * 7 5 3 9 9 H 1.48501 * 109.47263 * 210.00035 * 7 5 3 10 10 H 1.48496 * 109.47125 * 330.00043 * 7 5 3 11 11 C 1.34777 * 119.99960 * 180.02562 * 2 1 3 12 12 S 1.71203 * 119.99701 * 179.97438 * 11 2 1 13 13 N 1.34771 * 120.00097 * 359.97438 * 11 2 1 14 14 C 1.46498 * 120.00159 * 180.02562 * 13 11 2 15 15 C 1.50702 * 109.47321 * 179.97438 * 14 13 11 16 16 C 1.38239 * 120.00540 * 104.99431 * 15 14 13 17 17 C 1.38220 * 120.01283 * 179.97438 * 16 15 14 18 18 C 1.38254 * 120.02651 * 0.05497 * 17 16 15 19 19 C 1.38197 * 120.01395 * 359.97088 * 18 17 16 20 20 C 1.38330 * 120.00691 * 284.73182 * 15 14 13 21 21 Cl 1.73601 * 120.01397 * 359.96867 * 20 15 14 22 22 H 1.09005 * 109.46829 * 264.96909 * 1 2 3 23 23 H 1.09002 * 109.46994 * 24.96614 * 1 2 3 24 24 H 1.08996 * 109.47110 * 144.96805 * 1 2 3 25 25 H 0.96998 * 120.00348 * 179.97438 * 6 5 3 26 26 H 0.97006 * 119.99740 * 0.02562 * 13 11 2 27 27 H 1.09003 * 109.47246 * 299.99874 * 14 13 11 28 28 H 1.08998 * 109.47054 * 59.99919 * 14 13 11 29 29 H 1.08006 * 119.99152 * 0.02562 * 16 15 14 30 30 H 1.07996 * 119.98531 * 180.02562 * 17 16 15 31 31 H 1.08000 * 119.99567 * 179.97438 * 18 17 16 32 32 H 1.08002 * 120.00589 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1871 0.0000 4 1 3.1478 1.2348 -0.4114 5 6 1.5622 2.3285 0.5289 6 7 0.4476 2.2337 1.2200 7 14 2.3544 3.9984 0.2587 8 1 1.8217 4.6030 -0.9886 9 1 2.0458 4.8848 1.4094 10 1 3.8256 3.8350 0.1404 11 6 2.1389 -1.1672 -0.0005 12 16 3.8509 -1.1671 -0.0012 13 7 1.4650 -2.3344 -0.0005 14 6 2.1975 -3.6031 -0.0005 15 6 1.2182 -4.7486 0.0001 16 6 1.0040 -5.4755 -1.1560 17 6 0.1062 -6.5265 -1.1555 18 6 -0.5788 -6.8506 0.0009 19 6 -0.3659 -6.1243 1.1571 20 6 0.5376 -5.0762 1.1590 21 17 0.8118 -4.1685 2.6132 22 1 -0.3633 -0.0901 1.0238 23 1 -0.3633 0.9317 -0.4338 24 1 -0.3633 -0.8415 -0.5899 25 1 0.0369 3.0309 1.5898 26 1 0.4950 -2.3343 -0.0005 27 1 2.8242 -3.6609 -0.8905 28 1 2.8242 -3.6608 0.8894 29 1 1.5388 -5.2228 -2.0596 30 1 -0.0605 -7.0944 -2.0588 31 1 -1.2805 -7.6716 0.0006 32 1 -0.9008 -6.3778 2.0605 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001196816593.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:20 Heat of formation + Delta-G solvation = 40.630120 kcal Electronic energy + Delta-G solvation = -17526.544420 eV Core-core repulsion = 14639.290339 eV Total energy + Delta-G solvation = -2887.254082 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.66092 -38.14736 -36.37448 -35.27242 -32.48749 -31.10011 -30.74911 -27.28462 -26.46914 -24.46455 -22.83806 -21.55090 -20.91195 -18.31338 -17.40166 -16.76846 -15.83559 -15.49237 -15.34212 -14.82373 -14.10148 -13.96577 -13.88909 -13.45513 -13.29861 -12.93854 -12.82099 -11.80704 -11.66138 -11.55503 -11.52116 -11.45754 -11.07165 -10.92126 -10.66557 -10.43920 -10.36797 -9.74936 -9.25463 -9.10501 -8.81093 -8.07549 -6.75311 -6.51818 -6.00728 -4.20103 0.96627 1.07577 2.17123 2.74993 3.13100 3.17454 3.26017 3.35176 3.58827 3.94925 4.27182 4.60380 4.64997 4.73272 4.81439 4.86689 5.10252 5.20721 5.45979 5.69019 5.82215 5.82881 6.03976 6.19895 6.23220 6.38074 6.40209 6.62732 6.74954 7.24487 7.32881 7.40652 8.18018 8.41885 8.95338 9.13701 10.32327 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.026810 B = 0.004637 C = 0.004460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1044.134381 B = 6036.989234 C = 6277.086133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.365 5.365 3 C -0.291 4.291 4 H 0.132 0.868 5 C 0.037 3.963 6 N -0.866 5.866 7 Si 0.942 3.058 8 H -0.274 1.274 9 H -0.281 1.281 10 H -0.259 1.259 11 C 0.480 3.520 12 S -0.759 6.759 13 N -0.709 5.709 14 C 0.182 3.818 15 C -0.093 4.093 16 C -0.089 4.089 17 C -0.120 4.120 18 C -0.108 4.108 19 C -0.116 4.116 20 C -0.024 4.024 21 Cl -0.053 7.053 22 H 0.068 0.932 23 H 0.089 0.911 24 H 0.031 0.969 25 H 0.276 0.724 26 H 0.383 0.617 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.135 0.865 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.109 -14.329 -2.163 16.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.051 5.051 3 C -0.423 4.423 4 H 0.149 0.851 5 C -0.170 4.170 6 N -0.501 5.501 7 Si 0.767 3.233 8 H -0.199 1.199 9 H -0.206 1.206 10 H -0.183 1.183 11 C 0.119 3.881 12 S -0.631 6.631 13 N -0.348 5.348 14 C 0.058 3.942 15 C -0.095 4.095 16 C -0.108 4.108 17 C -0.139 4.139 18 C -0.126 4.126 19 C -0.135 4.135 20 C -0.051 4.051 21 Cl -0.024 7.024 22 H 0.086 0.914 23 H 0.108 0.892 24 H 0.050 0.950 25 H 0.086 0.914 26 H 0.220 0.780 27 H 0.101 0.899 28 H 0.106 0.894 29 H 0.153 0.847 30 H 0.146 0.854 31 H 0.147 0.853 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -7.161 -14.020 -1.912 15.858 hybrid contribution -1.295 0.793 0.196 1.531 sum -8.456 -13.227 -1.716 15.792 Atomic orbital electron populations 1.21849 0.80765 1.01179 1.01770 1.42890 1.05271 1.03795 1.53112 1.20419 1.02777 0.82010 1.37107 0.85098 1.25640 0.96139 1.01176 0.94072 1.70016 1.18591 1.31117 1.30372 0.85637 0.80437 0.79291 0.77930 1.19934 1.20600 1.18291 1.21248 0.93511 0.80726 0.92620 1.92431 0.93662 1.95101 1.81929 1.44182 1.07774 1.03227 1.79617 1.20113 0.91277 0.78135 1.04704 1.20116 0.98369 0.98708 0.92260 1.21161 0.97567 0.94808 0.97287 1.21242 0.96645 0.97485 0.98478 1.21123 0.99631 0.99487 0.92378 1.21077 0.97999 0.94946 0.99442 1.21016 0.99382 0.95837 0.88875 1.98424 1.95323 1.73424 1.35200 0.91374 0.89190 0.95033 0.91387 0.78034 0.89947 0.89419 0.84747 0.85379 0.85259 0.84999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.89 8.34 59.85 0.50 2.39 16 2 N -0.36 -8.97 3.01 -124.14 -0.37 -9.34 16 3 C -0.29 -7.75 8.94 -14.97 -0.13 -7.89 16 4 H 0.13 3.73 6.71 -52.49 -0.35 3.38 16 5 C 0.04 0.94 5.07 -17.46 -0.09 0.85 16 6 N -0.87 -21.64 10.85 55.49 0.60 -21.04 16 7 Si 0.94 19.94 29.57 -169.99 -5.03 14.92 16 8 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 9 H -0.28 -5.86 7.11 56.52 0.40 -5.45 16 10 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 11 C 0.48 11.55 7.66 -86.92 -0.67 10.88 16 12 S -0.76 -20.92 27.34 -107.50 -2.94 -23.86 16 13 N -0.71 -13.57 5.33 -63.21 -0.34 -13.91 16 14 C 0.18 3.10 4.59 -5.19 -0.02 3.07 16 15 C -0.09 -1.25 5.25 -104.59 -0.55 -1.80 16 16 C -0.09 -0.99 9.67 -39.59 -0.38 -1.38 16 17 C -0.12 -1.10 10.05 -39.58 -0.40 -1.49 16 18 C -0.11 -0.95 10.05 -39.59 -0.40 -1.35 16 19 C -0.12 -1.22 9.83 -39.55 -0.39 -1.61 16 20 C -0.02 -0.31 6.31 -39.50 -0.25 -0.56 16 21 Cl -0.05 -0.78 27.56 -51.86 -1.43 -2.21 16 22 H 0.07 1.47 7.84 -51.93 -0.41 1.06 16 23 H 0.09 1.96 6.82 -51.93 -0.35 1.60 16 24 H 0.03 0.55 6.64 -51.93 -0.34 0.20 16 25 H 0.28 6.50 8.31 -40.82 -0.34 6.16 16 26 H 0.38 6.67 6.31 -40.82 -0.26 6.41 16 27 H 0.08 1.45 7.80 -51.93 -0.41 1.04 16 28 H 0.09 1.67 7.42 -51.93 -0.39 1.29 16 29 H 0.13 1.34 8.00 -52.48 -0.42 0.92 16 30 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 31 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 32 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 LS Contribution 300.75 15.07 4.53 4.53 Total: -1.00 -31.02 300.75 -11.08 -42.10 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -3.33 Total: 7.70 kcal Atomic # 6 Polarization: 3.89 SS G_CDS: -2.78 Total: 1.12 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -0.11 Total: -44.29 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.92 kcal Atomic # 16 Polarization: -20.92 SS G_CDS: -2.94 Total: -23.86 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.43 Total: -2.21 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -31.02 -11.08 -42.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196816593.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.728 kcal (2) G-P(sol) polarization free energy of solvation -31.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.098 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds