Wall clock time and date at job start Tue Mar 31 2020 05:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37066 * 120.00160 * 2 1 4 4 H 1.08003 * 120.00085 * 203.45580 * 3 2 1 5 5 C 1.38868 * 120.00325 * 23.44837 * 3 2 1 6 6 N 1.31486 * 119.99522 * 15.43383 * 5 3 2 7 7 Si 1.86803 * 120.00232 * 195.43521 * 5 3 2 8 8 H 1.48495 * 109.47144 * 359.97438 * 7 5 3 9 9 H 1.48498 * 109.46953 * 120.00167 * 7 5 3 10 10 H 1.48500 * 109.47050 * 239.99961 * 7 5 3 11 11 C 1.34774 * 119.99946 * 179.97438 * 2 1 3 12 12 S 1.71200 * 120.00377 * 180.02562 * 11 2 1 13 13 N 1.34784 * 119.99917 * 0.02562 * 11 2 1 14 14 C 1.46504 * 119.99739 * 179.97438 * 13 11 2 15 15 C 1.50704 * 109.46903 * 180.02562 * 14 13 11 16 16 C 1.38241 * 119.98285 * 269.72210 * 15 14 13 17 17 C 1.38217 * 120.00822 * 179.72414 * 16 15 14 18 18 C 1.38351 * 119.98913 * 0.55222 * 17 16 15 19 19 Cl 1.73601 * 120.01504 * 179.70353 * 18 17 16 20 20 C 1.38359 * 119.97128 * 359.72361 * 18 17 16 21 21 C 1.38214 * 119.98493 * 0.02562 * 20 18 17 22 22 H 1.08994 * 109.47563 * 265.05235 * 1 2 3 23 23 H 1.09002 * 109.47005 * 25.05090 * 1 2 3 24 24 H 1.09003 * 109.47033 * 145.04829 * 1 2 3 25 25 H 0.97005 * 119.99642 * 179.97438 * 6 5 3 26 26 H 0.96993 * 119.99898 * 359.97438 * 13 11 2 27 27 H 1.08996 * 109.47212 * 59.99706 * 14 13 11 28 28 H 1.09003 * 109.47246 * 300.00079 * 14 13 11 29 29 H 1.08000 * 119.99551 * 0.02562 * 16 15 14 30 30 H 1.08002 * 120.00635 * 180.27745 * 17 16 15 31 31 H 1.07992 * 120.00501 * 179.97438 * 20 18 17 32 32 H 1.08000 * 119.98845 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1503 1.1870 0.0000 4 1 3.1634 1.2256 -0.3723 5 6 1.5421 2.3400 0.4785 6 7 0.4472 2.2541 1.2015 7 14 2.2794 4.0131 0.0951 8 1 3.5022 3.8380 -0.7289 9 1 1.2904 4.8301 -0.6529 10 1 2.6318 4.7010 1.3631 11 6 2.1388 -1.1672 0.0005 12 16 3.8508 -1.1673 0.0012 13 7 1.4649 -2.3344 0.0005 14 6 2.1974 -3.6032 0.0005 15 6 1.2181 -4.7486 -0.0001 16 6 0.7731 -5.2778 1.1970 17 6 -0.1295 -6.3246 1.1971 18 6 -0.5788 -6.8503 -0.0012 19 17 -1.7065 -8.1702 -0.0019 20 6 -0.1286 -6.3240 -1.1990 21 6 0.7700 -5.2738 -1.1977 22 1 -0.3634 -0.0886 1.0238 23 1 -0.3633 0.9310 -0.4351 24 1 -0.3633 -0.8423 -0.5887 25 1 0.0225 3.0595 1.5361 26 1 0.4950 -2.3344 0.0005 27 1 2.8241 -3.6609 0.8904 28 1 2.8241 -3.6609 -0.8895 29 1 1.1270 -4.8699 2.1323 30 1 -0.4805 -6.7350 2.1323 31 1 -0.4787 -6.7342 -2.1346 32 1 1.1217 -4.8632 -2.1327 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001197573858.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:22 Heat of formation + Delta-G solvation = 22.647658 kcal Electronic energy + Delta-G solvation = -17121.536680 eV Core-core repulsion = 14233.502820 eV Total energy + Delta-G solvation = -2888.033860 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.71041 -39.86393 -37.63622 -36.68116 -34.15655 -32.10764 -32.08830 -29.08635 -27.90403 -26.05413 -23.84774 -22.78573 -22.49992 -20.11585 -19.00723 -17.98496 -17.36738 -16.80959 -16.64864 -16.07868 -15.81913 -15.43087 -15.29842 -14.58995 -14.51583 -14.31070 -14.27446 -13.55094 -13.44867 -12.82725 -12.72363 -12.59218 -12.49974 -12.34339 -12.17566 -12.08417 -11.82153 -11.79309 -11.05850 -10.05682 -9.87412 -9.73793 -8.75957 -8.59872 -8.19915 -6.19977 -0.02278 0.28314 0.85296 1.10564 1.40808 1.49227 1.53075 1.62728 2.13572 2.36950 2.76689 2.83230 3.03954 3.63424 3.76544 3.92524 4.20702 4.23073 4.31839 4.60533 4.64522 4.66384 4.82600 4.98184 5.00721 5.14563 5.19816 5.33931 5.48372 5.53456 5.71253 5.76873 6.36769 6.51675 7.04568 7.15829 8.36971 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.032885 B = 0.003480 C = 0.003279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.260342 B = 8043.301060 C = 8538.406909 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.370 5.370 3 C -0.329 4.329 4 H 0.105 0.895 5 C 0.013 3.987 6 N -0.870 5.870 7 Si 1.000 3.000 8 H -0.271 1.271 9 H -0.258 1.258 10 H -0.273 1.273 11 C 0.480 3.520 12 S -0.835 6.835 13 N -0.692 5.692 14 C 0.190 3.810 15 C -0.103 4.103 16 C -0.090 4.090 17 C -0.113 4.113 18 C -0.036 4.036 19 Cl -0.068 7.068 20 C -0.112 4.112 21 C -0.088 4.088 22 H 0.064 0.936 23 H 0.081 0.919 24 H 0.072 0.928 25 H 0.285 0.715 26 H 0.399 0.601 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.139 0.861 30 H 0.151 0.849 31 H 0.153 0.847 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.147 -14.629 -2.347 17.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.055 5.055 3 C -0.461 4.461 4 H 0.123 0.877 5 C -0.194 4.194 6 N -0.504 5.504 7 Si 0.822 3.178 8 H -0.195 1.195 9 H -0.182 1.182 10 H -0.198 1.198 11 C 0.116 3.884 12 S -0.709 6.709 13 N -0.331 5.331 14 C 0.066 3.934 15 C -0.104 4.104 16 C -0.108 4.108 17 C -0.131 4.131 18 C -0.063 4.063 19 Cl -0.039 7.039 20 C -0.130 4.130 21 C -0.107 4.107 22 H 0.083 0.917 23 H 0.099 0.901 24 H 0.091 0.909 25 H 0.095 0.905 26 H 0.238 0.762 27 H 0.085 0.915 28 H 0.088 0.912 29 H 0.157 0.843 30 H 0.169 0.831 31 H 0.170 0.830 32 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -9.393 -14.565 -2.236 17.475 hybrid contribution -0.889 0.709 0.099 1.141 sum -10.282 -13.857 -2.138 17.387 Atomic orbital electron populations 1.21902 0.78293 1.02611 1.02211 1.43090 1.06735 1.03422 1.52247 1.20360 1.01359 0.83075 1.41265 0.87734 1.26301 0.96372 1.03496 0.93231 1.70069 1.19435 1.32151 1.28756 0.84763 0.78713 0.75737 0.78599 1.19497 1.18245 1.19842 1.20880 0.92078 0.82212 0.93239 1.92543 0.98033 1.95717 1.84622 1.44233 1.08507 1.02532 1.77841 1.20055 0.91932 0.78231 1.03154 1.19969 0.98722 0.97341 0.94385 1.21227 0.95945 0.95414 0.98256 1.21236 0.97495 0.96604 0.97765 1.21143 0.96287 0.93263 0.95562 1.98375 1.60118 1.46444 1.98968 1.21249 0.97511 0.96532 0.97720 1.21230 0.95894 0.95360 0.98192 0.91706 0.90064 0.90948 0.90460 0.76206 0.91528 0.91195 0.84320 0.83130 0.82953 0.83964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.67 8.36 127.77 1.07 4.74 16 2 N -0.37 -17.67 3.01 -546.67 -1.65 -19.31 16 3 C -0.33 -17.40 8.99 84.03 0.76 -16.64 16 4 H 0.10 6.12 6.65 -2.91 -0.02 6.10 16 5 C 0.01 0.65 4.98 84.90 0.42 1.07 16 6 N -0.87 -41.42 10.94 21.65 0.24 -41.18 16 7 Si 1.00 39.42 29.58 68.60 2.03 41.45 16 8 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 9 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 10 H -0.27 -10.61 7.11 99.48 0.71 -9.90 16 11 C 0.48 22.57 7.66 179.05 1.37 23.94 16 12 S -0.84 -46.62 27.31 -56.49 -1.54 -48.16 16 13 N -0.69 -24.56 5.41 -353.89 -1.92 -26.47 16 14 C 0.19 5.94 5.25 85.63 0.45 6.39 16 15 C -0.10 -2.40 5.25 -19.86 -0.10 -2.51 16 16 C -0.09 -1.86 9.70 22.27 0.22 -1.65 16 17 C -0.11 -2.04 9.83 22.29 0.22 -1.82 16 18 C -0.04 -0.65 6.32 22.33 0.14 -0.51 16 19 Cl -0.07 -1.14 28.96 -2.72 -0.08 -1.22 16 20 C -0.11 -1.96 9.83 22.29 0.22 -1.74 16 21 C -0.09 -1.76 9.70 22.26 0.22 -1.54 16 22 H 0.06 2.56 7.87 -2.39 -0.02 2.54 16 23 H 0.08 3.31 6.76 -2.39 -0.02 3.29 16 24 H 0.07 2.21 6.64 -2.39 -0.02 2.19 16 25 H 0.29 12.53 8.31 -92.70 -0.77 11.76 16 26 H 0.40 12.02 6.30 -92.71 -0.58 11.44 16 27 H 0.07 2.33 7.93 -2.39 -0.02 2.31 16 28 H 0.07 2.38 7.93 -2.39 -0.02 2.36 16 29 H 0.14 2.76 8.06 -2.91 -0.02 2.73 16 30 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 31 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 32 H 0.14 2.60 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -65.30 303.04 2.62 -62.68 By element: Atomic # 1 Polarization: 21.92 SS G_CDS: 0.56 Total: 22.48 kcal Atomic # 6 Polarization: 4.76 SS G_CDS: 4.98 Total: 9.74 kcal Atomic # 7 Polarization: -83.64 SS G_CDS: -3.32 Total: -86.97 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Atomic # 16 Polarization: -46.62 SS G_CDS: -1.54 Total: -48.16 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.08 Total: -1.22 kcal Total: -65.30 2.62 -62.68 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001197573858.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.323 kcal (2) G-P(sol) polarization free energy of solvation -65.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.676 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds