Wall clock time and date at job start Tue Mar 31 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38158 * 120.03151 * 2 1 4 4 C 1.38250 * 120.09471 * 179.97438 * 3 2 1 5 5 C 1.38309 * 120.15029 * 0.25943 * 4 3 2 6 6 C 1.38185 * 120.05602 * 359.48948 * 5 4 3 7 7 Cl 1.73598 * 120.04385 * 180.23137 * 6 5 4 8 8 C 1.38823 * 120.02789 * 179.97438 * 2 1 3 9 9 N 1.39946 * 120.07556 * 0.03349 * 8 2 1 10 10 C 1.34783 * 119.99667 * 74.94304 * 9 8 2 11 11 S 1.71196 * 119.99938 * 4.56350 * 10 9 8 12 12 N 1.34765 * 119.99697 * 184.55785 * 10 9 8 13 13 C 1.46503 * 119.99926 * 180.02562 * 12 10 9 14 14 C 1.50696 * 109.47445 * 180.02562 * 13 12 10 15 15 H 1.08005 * 120.00163 * 0.02562 * 14 13 12 16 16 C 1.37882 * 120.00252 * 179.97438 * 14 13 12 17 17 N 1.31506 * 119.99915 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 119.99854 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.47300 * 90.00493 * 18 16 14 20 20 H 1.48504 * 109.46878 * 210.00032 * 18 16 14 21 21 H 1.48498 * 109.47402 * 329.99906 * 18 16 14 22 22 H 1.08994 * 109.48029 * 96.30405 * 1 2 3 23 23 H 1.09002 * 109.47147 * 216.30705 * 1 2 3 24 24 H 1.09007 * 109.47045 * 336.30383 * 1 2 3 25 25 H 1.07999 * 119.95353 * 359.96173 * 3 2 1 26 26 H 1.08004 * 119.92831 * 179.97438 * 4 3 2 27 27 H 1.08002 * 119.97135 * 179.74101 * 5 4 3 28 28 H 0.96996 * 120.00139 * 254.94632 * 9 8 2 29 29 H 0.96999 * 120.00409 * 0.02562 * 12 10 9 30 30 H 1.09005 * 109.47338 * 300.00189 * 13 12 10 31 31 H 1.08999 * 109.46925 * 60.00212 * 13 12 10 32 32 H 0.97003 * 120.00236 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1984 1.1961 0.0000 4 6 3.5809 1.1976 0.0005 5 6 4.2769 0.0024 -0.0043 6 6 3.5916 -1.1975 0.0009 7 17 4.4656 -2.6975 0.0008 8 6 2.2016 -1.2019 0.0005 9 7 1.5041 -2.4151 0.0004 10 6 0.9059 -2.8483 -1.1271 11 16 1.0967 -1.9751 -2.5871 12 7 0.1577 -3.9690 -1.1050 13 6 -0.4921 -4.4402 -2.3306 14 6 -1.2624 -5.7019 -2.0376 15 1 -1.2679 -6.1116 -1.0383 16 6 -1.9612 -6.3327 -3.0451 17 7 -1.9558 -5.8330 -4.2615 18 14 -2.9154 -7.8969 -2.6820 19 1 -4.3013 -7.5488 -2.2777 20 1 -2.9537 -8.7471 -3.8990 21 1 -2.2500 -8.6385 -1.5809 22 1 -0.3635 -0.1128 -1.0213 23 1 -0.3633 -0.8282 0.6085 24 1 -0.3633 0.9411 0.4130 25 1 1.6581 2.1313 -0.0006 26 1 4.1187 2.1342 0.0001 27 1 5.3569 0.0070 -0.0081 28 1 1.4511 -2.9442 0.8116 29 1 0.0493 -4.4637 -0.2777 30 1 -1.1757 -3.6743 -2.6970 31 1 0.2650 -4.6439 -3.0879 32 1 -2.4470 -6.2770 -4.9704 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200183773.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:41 Heat of formation + Delta-G solvation = 10.923500 kcal Electronic energy + Delta-G solvation = -17379.720390 eV Core-core repulsion = 14491.178133 eV Total energy + Delta-G solvation = -2888.542258 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.29641 -39.22688 -37.52078 -36.50437 -34.64052 -33.45034 -31.04705 -29.25225 -27.84887 -25.33610 -24.48960 -23.46553 -22.48170 -20.05547 -19.21116 -18.07371 -17.36430 -17.10167 -16.73125 -16.55037 -15.57150 -15.51061 -15.10711 -14.79936 -14.36383 -14.18893 -13.79356 -13.54046 -13.40778 -12.92790 -12.75536 -12.55591 -12.35009 -12.25911 -12.24207 -12.18172 -11.88255 -11.55767 -10.84748 -10.26415 -9.71171 -9.59439 -8.94488 -8.48402 -8.28867 -6.48690 0.02406 0.24196 0.45352 0.98751 1.10595 1.42489 1.44488 1.54832 1.68087 2.34813 2.62852 2.72005 3.04933 3.73910 3.98180 4.24878 4.30489 4.32998 4.53457 4.72093 4.83518 4.88998 5.04326 5.19505 5.22024 5.23267 5.34351 5.36575 5.47964 5.72096 5.74834 5.82583 6.06268 6.46537 6.69788 7.23187 8.80563 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.027023 B = 0.004386 C = 0.004090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1035.892523 B = 6382.620299 C = 6844.793327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.053 4.053 3 C -0.112 4.112 4 C -0.087 4.087 5 C -0.118 4.118 6 C -0.036 4.036 7 Cl -0.072 7.072 8 C 0.132 3.868 9 N -0.631 5.631 10 C 0.586 3.414 11 S -0.726 6.726 12 N -0.643 5.643 13 C 0.278 3.722 14 C -0.566 4.566 15 H 0.082 0.918 16 C 0.013 3.987 17 N -0.921 5.921 18 Si 0.981 3.019 19 H -0.270 1.270 20 H -0.285 1.285 21 H -0.258 1.258 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.095 0.905 25 H 0.159 0.841 26 H 0.171 0.829 27 H 0.156 0.844 28 H 0.418 0.582 29 H 0.409 0.591 30 H 0.015 0.985 31 H 0.010 0.990 32 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.627 11.669 15.900 21.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.056 4.056 3 C -0.130 4.130 4 C -0.105 4.105 5 C -0.137 4.137 6 C -0.064 4.064 7 Cl -0.043 7.043 8 C 0.039 3.961 9 N -0.262 5.262 10 C 0.223 3.777 11 S -0.602 6.602 12 N -0.267 5.267 13 C 0.156 3.844 14 C -0.604 4.604 15 H 0.100 0.900 16 C -0.188 4.188 17 N -0.558 5.558 18 Si 0.804 3.196 19 H -0.196 1.196 20 H -0.210 1.210 21 H -0.182 1.182 22 H 0.077 0.923 23 H 0.077 0.923 24 H 0.114 0.886 25 H 0.177 0.823 26 H 0.188 0.812 27 H 0.173 0.827 28 H 0.259 0.741 29 H 0.247 0.753 30 H 0.033 0.967 31 H 0.028 0.972 32 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.691 12.025 14.641 21.280 hybrid contribution -0.599 -2.023 0.860 2.278 sum 9.092 10.002 15.500 20.566 Atomic orbital electron populations 1.20819 0.90385 1.03595 1.02303 1.20118 0.96893 0.91849 0.96691 1.21385 0.94885 0.97434 0.99336 1.21556 0.93902 0.98552 0.96486 1.21246 1.01572 0.89871 1.01013 1.21305 0.90724 0.88654 1.05747 1.98368 1.75826 1.33274 1.96868 1.16949 0.88544 0.84573 1.06084 1.41848 1.52123 1.22031 1.10180 1.21780 0.80744 0.84848 0.90335 1.93386 1.82416 1.62853 1.21546 1.45490 1.43971 1.21577 1.15685 1.18965 0.91378 0.93927 0.80100 1.21536 1.32139 1.09373 0.97343 0.89952 1.25930 0.97111 1.01468 0.94286 1.70139 1.41961 1.41466 1.02245 0.85213 0.78631 0.77720 0.77996 1.19561 1.21014 1.18163 0.92264 0.92329 0.88585 0.82348 0.81163 0.82669 0.74122 0.75270 0.96709 0.97182 0.92121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.85 8.96 71.23 0.64 -2.21 16 2 C -0.05 -1.34 5.40 -19.75 -0.11 -1.44 16 3 C -0.11 -2.11 9.67 22.25 0.22 -1.89 16 4 C -0.09 -1.40 10.04 22.29 0.22 -1.18 16 5 C -0.12 -2.33 9.82 22.27 0.22 -2.11 16 6 C -0.04 -0.91 6.34 22.44 0.14 -0.77 16 7 Cl -0.07 -1.90 28.44 -2.72 -0.08 -1.98 16 8 C 0.13 3.63 4.81 38.17 0.18 3.82 16 9 N -0.63 -18.02 3.88 -189.90 -0.74 -18.75 16 10 C 0.59 22.43 7.33 179.06 1.31 23.74 16 11 S -0.73 -35.05 26.67 -56.49 -1.51 -36.55 16 12 N -0.64 -25.46 5.55 -353.91 -1.97 -27.42 16 13 C 0.28 14.44 4.88 85.63 0.42 14.86 16 14 C -0.57 -29.40 9.28 25.60 0.24 -29.17 16 15 H 0.08 3.85 7.60 -2.91 -0.02 3.82 16 16 C 0.01 0.71 5.46 84.66 0.46 1.17 16 17 N -0.92 -54.29 13.29 21.45 0.28 -54.01 16 18 Si 0.98 41.27 29.54 68.60 2.03 43.29 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 20 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 21 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 22 H 0.06 1.92 7.44 -2.39 -0.02 1.91 16 23 H 0.06 1.44 7.67 -2.39 -0.02 1.42 16 24 H 0.10 1.74 8.04 -2.38 -0.02 1.72 16 25 H 0.16 2.06 8.06 -2.91 -0.02 2.03 16 26 H 0.17 1.44 8.06 -2.91 -0.02 1.41 16 27 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 28 H 0.42 9.10 8.84 -92.71 -0.82 8.28 16 29 H 0.41 13.07 8.34 -92.71 -0.77 12.30 16 30 H 0.01 0.88 7.99 -2.38 -0.02 0.86 16 31 H 0.01 0.61 7.99 -2.39 -0.02 0.59 16 32 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 Total: -1.00 -72.27 307.08 1.54 -70.73 By element: Atomic # 1 Polarization: 20.29 SS G_CDS: -0.43 Total: 19.86 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: 3.95 Total: 4.83 kcal Atomic # 7 Polarization: -97.77 SS G_CDS: -2.42 Total: -100.18 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: -35.05 SS G_CDS: -1.51 Total: -36.55 kcal Atomic # 17 Polarization: -1.90 SS G_CDS: -0.08 Total: -1.98 kcal Total: -72.27 1.54 -70.73 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200183773.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.650 kcal (2) G-P(sol) polarization free energy of solvation -72.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds