Wall clock time and date at job start Tue Mar 31 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38149 * 120.03354 * 2 1 4 4 C 1.38262 * 120.09343 * 180.02562 * 3 2 1 5 5 C 1.38308 * 120.15294 * 359.97438 * 4 3 2 6 6 C 1.38180 * 120.06016 * 359.95349 * 5 4 3 7 7 Cl 1.73603 * 120.04718 * 180.02562 * 6 5 4 8 8 C 1.38831 * 120.02511 * 180.21540 * 2 1 3 9 9 N 1.39915 * 120.07990 * 359.97438 * 8 2 1 10 10 C 1.34783 * 119.99515 * 67.82802 * 9 8 2 11 11 S 1.71196 * 119.99842 * 5.97682 * 10 9 8 12 12 N 1.34778 * 119.99787 * 185.96983 * 10 9 8 13 13 C 1.46495 * 120.00116 * 0.02562 * 12 10 9 14 14 C 1.37043 * 119.99951 * 180.02562 * 12 10 9 15 15 H 1.08006 * 119.99865 * 22.80174 * 14 12 10 16 16 C 1.38878 * 120.00208 * 202.80225 * 14 12 10 17 17 N 1.31476 * 119.99945 * 11.69752 * 16 14 12 18 18 Si 1.86797 * 120.00085 * 191.69231 * 16 14 12 19 19 H 1.48500 * 109.47288 * 89.99893 * 18 16 14 20 20 H 1.48494 * 109.47397 * 210.00125 * 18 16 14 21 21 H 1.48506 * 109.47175 * 330.00416 * 18 16 14 22 22 H 1.09005 * 109.47053 * 88.20585 * 1 2 3 23 23 H 1.08993 * 109.47602 * 208.21256 * 1 2 3 24 24 H 1.09005 * 109.46904 * 328.21414 * 1 2 3 25 25 H 1.08002 * 119.95558 * 0.02562 * 3 2 1 26 26 H 1.07994 * 119.92217 * 179.97438 * 4 3 2 27 27 H 1.07997 * 119.96874 * 179.97438 * 5 4 3 28 28 H 0.96998 * 120.00666 * 247.82909 * 9 8 2 29 29 H 1.08998 * 109.47482 * 85.92829 * 13 12 10 30 30 H 1.08996 * 109.46939 * 205.93079 * 13 12 10 31 31 H 1.09003 * 109.46726 * 325.92392 * 13 12 10 32 32 H 0.97001 * 120.00168 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1960 0.0000 4 6 3.5811 1.1974 -0.0005 5 6 4.2771 0.0022 -0.0005 6 6 3.5919 -1.1977 0.0010 7 17 4.4658 -2.6977 0.0016 8 6 2.2017 -1.2020 -0.0045 9 7 1.5043 -2.4150 -0.0085 10 6 0.7862 -2.7757 -1.0905 11 16 0.8491 -1.8277 -2.5146 12 7 0.0187 -3.8829 -1.0513 13 6 -0.0355 -4.6939 0.1675 14 6 -0.7112 -4.2501 -2.1516 15 1 -0.4175 -3.9080 -3.1331 16 6 -1.8283 -5.0619 -2.0047 17 7 -2.3220 -5.2904 -0.8077 18 14 -2.6296 -5.8291 -3.5075 19 1 -2.0114 -7.1521 -3.7771 20 1 -4.0832 -6.0035 -3.2589 21 1 -2.4312 -4.9416 -4.6816 22 1 -0.3633 0.0322 -1.0272 23 1 -0.3634 -0.9055 0.4858 24 1 -0.3633 0.8736 0.5413 25 1 1.6583 2.1312 0.0004 26 1 4.1188 2.1340 -0.0010 27 1 5.3570 0.0068 -0.0014 28 1 1.5377 -2.9962 0.7673 29 1 -0.7923 -4.2897 0.8396 30 1 -0.2906 -5.7216 -0.0910 31 1 0.9365 -4.6740 0.6605 32 1 -3.1025 -5.8571 -0.7051 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200192364.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:43 Heat of formation + Delta-G solvation = 45.571225 kcal Electronic energy + Delta-G solvation = -18047.127943 eV Core-core repulsion = 15160.088123 eV Total energy + Delta-G solvation = -2887.039819 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.76854 -37.98077 -36.18231 -35.06497 -32.38062 -31.91952 -29.24332 -27.42412 -26.69994 -25.20142 -22.25020 -21.59102 -20.63344 -18.62517 -17.40492 -16.70372 -15.73819 -15.57263 -15.21361 -14.43756 -13.98960 -13.75568 -13.51320 -13.38422 -13.05023 -12.33687 -12.19117 -11.89279 -11.78071 -11.58016 -11.20815 -11.14664 -11.02863 -10.92583 -10.76122 -10.53634 -10.45961 -9.78675 -9.47502 -8.67830 -8.29732 -8.07164 -6.88341 -6.51679 -5.97260 -4.30531 1.42802 1.56884 2.42487 2.61847 3.06633 3.10715 3.17229 3.37650 3.83223 3.90749 4.08333 4.59856 4.73307 5.05420 5.16358 5.46563 5.59095 5.64608 5.73850 5.95496 6.07675 6.24665 6.28487 6.38961 6.57240 6.65108 6.74190 6.82159 6.98077 7.11608 7.19296 7.55252 8.02213 8.27507 8.81615 8.98404 10.16155 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.024724 B = 0.005745 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.209503 B = 4872.908265 C = 5281.018426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.036 4.036 3 C -0.114 4.114 4 C -0.113 4.113 5 C -0.118 4.118 6 C -0.035 4.035 7 Cl -0.074 7.074 8 C 0.193 3.807 9 N -0.670 5.670 10 C 0.464 3.536 11 S -0.740 6.740 12 N -0.354 5.354 13 C 0.085 3.915 14 C -0.288 4.288 15 H 0.136 0.864 16 C 0.038 3.962 17 N -0.860 5.860 18 Si 0.945 3.055 19 H -0.272 1.272 20 H -0.279 1.279 21 H -0.258 1.258 22 H 0.099 0.901 23 H 0.060 0.940 24 H 0.054 0.946 25 H 0.126 0.874 26 H 0.126 0.874 27 H 0.128 0.872 28 H 0.391 0.609 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.033 0.967 32 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.760 4.934 7.398 11.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.039 4.039 3 C -0.133 4.133 4 C -0.132 4.132 5 C -0.137 4.137 6 C -0.064 4.064 7 Cl -0.045 7.045 8 C 0.098 3.902 9 N -0.307 5.307 10 C 0.106 3.894 11 S -0.610 6.610 12 N -0.037 5.037 13 C -0.061 4.061 14 C -0.421 4.421 15 H 0.154 0.846 16 C -0.171 4.171 17 N -0.494 5.494 18 Si 0.769 3.231 19 H -0.198 1.198 20 H -0.205 1.205 21 H -0.182 1.182 22 H 0.117 0.883 23 H 0.079 0.921 24 H 0.073 0.927 25 H 0.144 0.856 26 H 0.144 0.856 27 H 0.146 0.854 28 H 0.230 0.770 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.052 0.948 32 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 6.574 5.130 6.572 10.618 hybrid contribution -0.313 -1.466 0.602 1.616 sum 6.261 3.664 7.175 10.203 Atomic orbital electron populations 1.20890 0.90231 1.01250 1.04508 1.19951 0.96882 0.91249 0.95814 1.20911 0.94009 0.97239 1.01137 1.20941 0.94135 0.97173 1.00906 1.20749 0.99834 0.90432 1.02710 1.21113 0.91146 0.87436 1.06706 1.98340 1.75895 1.33310 1.96960 1.16670 0.87674 0.85540 1.00355 1.41588 1.52337 1.20332 1.16425 1.21234 0.90607 0.87172 0.90365 1.92438 1.86721 1.57718 1.24137 1.42939 1.32110 1.15781 1.12878 1.21967 0.98029 0.98963 0.87120 1.20566 1.06217 1.27058 0.88233 0.84630 1.25675 0.95814 0.96536 0.99028 1.70026 1.22217 1.34572 1.22555 0.85592 0.77714 0.79313 0.80475 1.19771 1.20462 1.18180 0.88295 0.92081 0.92685 0.85637 0.85571 0.85387 0.77007 0.91083 0.88718 0.94834 0.91113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.97 8.62 36.01 0.31 -1.66 16 2 C -0.04 -0.63 5.21 -104.43 -0.54 -1.18 16 3 C -0.11 -1.64 9.70 -39.61 -0.38 -2.03 16 4 C -0.11 -1.47 10.04 -39.55 -0.40 -1.87 16 5 C -0.12 -1.67 9.82 -39.58 -0.39 -2.06 16 6 C -0.03 -0.58 6.34 -39.31 -0.25 -0.83 16 7 Cl -0.07 -1.19 28.44 -51.86 -1.47 -2.66 16 8 C 0.19 3.55 5.03 -83.66 -0.42 3.13 16 9 N -0.67 -12.99 3.80 -11.37 -0.04 -13.04 16 10 C 0.46 10.83 6.53 -86.91 -0.57 10.26 16 11 S -0.74 -19.73 25.25 -107.50 -2.71 -22.45 16 12 N -0.35 -8.37 3.02 -124.15 -0.37 -8.74 16 13 C 0.09 1.71 8.43 59.84 0.50 2.22 16 14 C -0.29 -7.38 9.03 -14.99 -0.14 -7.51 16 15 H 0.14 3.76 6.61 -52.48 -0.35 3.41 16 16 C 0.04 0.91 5.07 -17.47 -0.09 0.82 16 17 N -0.86 -20.36 10.68 55.49 0.59 -19.77 16 18 Si 0.94 19.20 29.57 -169.99 -5.03 14.17 16 19 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 20 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 21 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 22 H 0.10 2.04 6.99 -51.93 -0.36 1.68 16 23 H 0.06 1.15 7.12 -51.93 -0.37 0.78 16 24 H 0.05 0.78 8.10 -51.93 -0.42 0.36 16 25 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 26 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 27 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 28 H 0.39 6.73 6.60 -40.82 -0.27 6.46 16 29 H 0.07 1.44 7.85 -51.93 -0.41 1.03 16 30 H 0.09 1.99 6.65 -51.93 -0.35 1.65 16 31 H 0.03 0.56 6.50 -51.93 -0.34 0.23 16 32 H 0.28 6.21 8.31 -40.82 -0.34 5.87 16 LS Contribution 294.82 15.07 4.44 4.44 Total: -1.00 -29.29 294.82 -10.22 -39.51 By element: Atomic # 1 Polarization: 12.50 SS G_CDS: -3.26 Total: 9.23 kcal Atomic # 6 Polarization: 1.66 SS G_CDS: -2.36 Total: -0.70 kcal Atomic # 7 Polarization: -41.72 SS G_CDS: 0.17 Total: -41.55 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Atomic # 16 Polarization: -19.73 SS G_CDS: -2.71 Total: -22.45 kcal Atomic # 17 Polarization: -1.19 SS G_CDS: -1.47 Total: -2.66 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.29 -10.22 -39.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200192364.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.085 kcal (2) G-P(sol) polarization free energy of solvation -29.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds