Wall clock time and date at job start Tue Mar 31 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38149 * 120.03354 * 2 1 4 4 C 1.38262 * 120.09343 * 180.02562 * 3 2 1 5 5 C 1.38308 * 120.15294 * 359.97438 * 4 3 2 6 6 C 1.38180 * 120.06016 * 359.95349 * 5 4 3 7 7 Cl 1.73603 * 120.04718 * 180.02562 * 6 5 4 8 8 C 1.38831 * 120.02511 * 180.21540 * 2 1 3 9 9 N 1.39915 * 120.07990 * 359.97438 * 8 2 1 10 10 C 1.34783 * 119.99515 * 67.82802 * 9 8 2 11 11 S 1.71196 * 119.99842 * 5.97682 * 10 9 8 12 12 N 1.34778 * 119.99787 * 185.96983 * 10 9 8 13 13 C 1.46495 * 120.00116 * 0.02562 * 12 10 9 14 14 C 1.37043 * 119.99951 * 180.02562 * 12 10 9 15 15 H 1.08006 * 119.99865 * 22.80174 * 14 12 10 16 16 C 1.38878 * 120.00208 * 202.80225 * 14 12 10 17 17 N 1.31476 * 119.99945 * 11.69752 * 16 14 12 18 18 Si 1.86797 * 120.00085 * 191.69231 * 16 14 12 19 19 H 1.48500 * 109.47288 * 89.99893 * 18 16 14 20 20 H 1.48494 * 109.47397 * 210.00125 * 18 16 14 21 21 H 1.48506 * 109.47175 * 330.00416 * 18 16 14 22 22 H 1.09005 * 109.47053 * 88.20585 * 1 2 3 23 23 H 1.08993 * 109.47602 * 208.21256 * 1 2 3 24 24 H 1.09005 * 109.46904 * 328.21414 * 1 2 3 25 25 H 1.08002 * 119.95558 * 0.02562 * 3 2 1 26 26 H 1.07994 * 119.92217 * 179.97438 * 4 3 2 27 27 H 1.07997 * 119.96874 * 179.97438 * 5 4 3 28 28 H 0.96998 * 120.00666 * 247.82909 * 9 8 2 29 29 H 1.08998 * 109.47482 * 85.92829 * 13 12 10 30 30 H 1.08996 * 109.46939 * 205.93079 * 13 12 10 31 31 H 1.09003 * 109.46726 * 325.92392 * 13 12 10 32 32 H 0.97001 * 120.00168 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1960 0.0000 4 6 3.5811 1.1974 -0.0005 5 6 4.2771 0.0022 -0.0005 6 6 3.5919 -1.1977 0.0010 7 17 4.4658 -2.6977 0.0016 8 6 2.2017 -1.2020 -0.0045 9 7 1.5043 -2.4150 -0.0085 10 6 0.7862 -2.7757 -1.0905 11 16 0.8491 -1.8277 -2.5146 12 7 0.0187 -3.8829 -1.0513 13 6 -0.0355 -4.6939 0.1675 14 6 -0.7112 -4.2501 -2.1516 15 1 -0.4175 -3.9080 -3.1331 16 6 -1.8283 -5.0619 -2.0047 17 7 -2.3220 -5.2904 -0.8077 18 14 -2.6296 -5.8291 -3.5075 19 1 -2.0114 -7.1521 -3.7771 20 1 -4.0832 -6.0035 -3.2589 21 1 -2.4312 -4.9416 -4.6816 22 1 -0.3633 0.0322 -1.0272 23 1 -0.3634 -0.9055 0.4858 24 1 -0.3633 0.8736 0.5413 25 1 1.6583 2.1312 0.0004 26 1 4.1188 2.1340 -0.0010 27 1 5.3570 0.0068 -0.0014 28 1 1.5377 -2.9962 0.7673 29 1 -0.7923 -4.2897 0.8396 30 1 -0.2906 -5.7216 -0.0910 31 1 0.9365 -4.6740 0.6605 32 1 -3.1025 -5.8571 -0.7051 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200192364.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:43 Heat of formation + Delta-G solvation = 30.774818 kcal Electronic energy + Delta-G solvation = -18047.769563 eV Core-core repulsion = 15160.088123 eV Total energy + Delta-G solvation = -2887.681440 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.17141 -39.59402 -37.43571 -36.61603 -34.07281 -33.27708 -30.58182 -29.14966 -28.08588 -26.89487 -23.58866 -23.09231 -22.09159 -20.32365 -19.13782 -18.16235 -17.18153 -16.98186 -16.76008 -16.05217 -15.59768 -15.31569 -15.08614 -14.74891 -14.26491 -13.71589 -13.62561 -13.47364 -13.43605 -13.05700 -12.77308 -12.72849 -12.46063 -12.24854 -12.14864 -12.13577 -11.82436 -11.73502 -11.19183 -10.27508 -9.51045 -9.49655 -8.71489 -8.50686 -8.03353 -6.23423 0.18503 0.35729 0.85490 1.17495 1.38988 1.48164 1.51811 1.62029 2.12273 2.39464 2.76520 2.81024 2.92107 3.86574 4.07143 4.15849 4.38279 4.41983 4.43929 4.61622 4.66098 4.82882 4.90909 4.96534 5.22265 5.29568 5.35727 5.37974 5.47243 5.58407 5.74372 6.05234 6.33300 6.43201 6.98497 7.10742 8.33009 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.024724 B = 0.005745 C = 0.005301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.209503 B = 4872.908265 C = 5281.018426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.058 4.058 3 C -0.113 4.113 4 C -0.097 4.097 5 C -0.117 4.117 6 C -0.049 4.049 7 Cl -0.076 7.076 8 C 0.156 3.844 9 N -0.653 5.653 10 C 0.481 3.519 11 S -0.807 6.807 12 N -0.363 5.363 13 C 0.094 3.906 14 C -0.323 4.323 15 H 0.107 0.893 16 C 0.015 3.985 17 N -0.868 5.868 18 Si 1.002 2.998 19 H -0.260 1.260 20 H -0.267 1.267 21 H -0.274 1.274 22 H 0.063 0.937 23 H 0.039 0.961 24 H 0.087 0.913 25 H 0.154 0.846 26 H 0.170 0.830 27 H 0.156 0.844 28 H 0.402 0.598 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.704 5.762 8.548 12.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.060 4.060 3 C -0.132 4.132 4 C -0.116 4.116 5 C -0.136 4.136 6 C -0.078 4.078 7 Cl -0.047 7.047 8 C 0.061 3.939 9 N -0.289 5.289 10 C 0.120 3.880 11 S -0.679 6.679 12 N -0.047 5.047 13 C -0.052 4.052 14 C -0.455 4.455 15 H 0.124 0.876 16 C -0.193 4.193 17 N -0.502 5.502 18 Si 0.824 3.176 19 H -0.185 1.185 20 H -0.192 1.192 21 H -0.199 1.199 22 H 0.081 0.919 23 H 0.058 0.942 24 H 0.105 0.895 25 H 0.171 0.829 26 H 0.188 0.812 27 H 0.173 0.827 28 H 0.242 0.758 29 H 0.086 0.914 30 H 0.104 0.896 31 H 0.083 0.917 32 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.537 5.953 7.785 12.364 hybrid contribution -0.528 -1.622 0.343 1.740 sum 7.009 4.331 8.128 11.574 Atomic orbital electron populations 1.20714 0.91089 1.01681 1.02385 1.20087 0.96591 0.92203 0.97163 1.21299 0.94994 0.97154 0.99714 1.21454 0.93647 0.98481 0.97979 1.21186 1.01335 0.89803 1.01228 1.21315 0.90695 0.88430 1.07330 1.98334 1.75690 1.33670 1.97007 1.16999 0.88542 0.85199 1.03114 1.41408 1.51271 1.20946 1.15318 1.20901 0.90541 0.86423 0.90109 1.92468 1.88328 1.59781 1.27319 1.43079 1.31936 1.16128 1.13557 1.21964 0.99742 0.97710 0.85743 1.20358 1.08026 1.29193 0.87909 0.87578 1.26303 0.95445 0.96063 1.01487 1.70049 1.22379 1.34342 1.23420 0.84781 0.77424 0.78504 0.76924 1.18498 1.19183 1.19883 0.91872 0.94207 0.89464 0.82869 0.81244 0.82669 0.75772 0.91370 0.89613 0.91657 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.60 8.62 71.24 0.61 -2.99 16 2 C -0.06 -1.96 5.21 -19.74 -0.10 -2.06 16 3 C -0.11 -2.93 9.70 22.25 0.22 -2.72 16 4 C -0.10 -2.14 10.04 22.29 0.22 -1.91 16 5 C -0.12 -2.94 9.82 22.27 0.22 -2.72 16 6 C -0.05 -1.56 6.34 22.44 0.14 -1.42 16 7 Cl -0.08 -2.36 28.44 -2.72 -0.08 -2.43 16 8 C 0.16 5.64 5.03 38.18 0.19 5.83 16 9 N -0.65 -25.41 3.80 -189.90 -0.72 -26.13 16 10 C 0.48 22.96 6.53 179.05 1.17 24.13 16 11 S -0.81 -44.58 25.25 -56.49 -1.43 -46.01 16 12 N -0.36 -17.55 3.02 -546.68 -1.65 -19.19 16 13 C 0.09 3.73 8.43 127.77 1.08 4.81 16 14 C -0.32 -17.01 9.03 84.03 0.76 -16.25 16 15 H 0.11 6.18 6.61 -2.91 -0.02 6.16 16 16 C 0.01 0.70 5.07 84.90 0.43 1.13 16 17 N -0.87 -40.87 10.68 21.65 0.23 -40.64 16 18 Si 1.00 39.46 29.57 68.60 2.03 41.49 16 19 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 20 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 22 H 0.06 2.70 6.99 -2.38 -0.02 2.68 16 23 H 0.04 1.52 7.12 -2.39 -0.02 1.50 16 24 H 0.09 2.39 8.10 -2.38 -0.02 2.37 16 25 H 0.15 3.06 8.06 -2.91 -0.02 3.04 16 26 H 0.17 2.28 8.06 -2.91 -0.02 2.26 16 27 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 28 H 0.40 13.67 6.60 -92.71 -0.61 13.06 16 29 H 0.07 2.75 7.85 -2.39 -0.02 2.73 16 30 H 0.09 3.59 6.65 -2.39 -0.02 3.57 16 31 H 0.07 2.14 6.50 -2.39 -0.02 2.13 16 32 H 0.29 12.49 8.31 -92.71 -0.77 11.72 16 Total: -1.00 -65.69 294.82 3.87 -61.82 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 0.55 Total: 25.26 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 4.94 Total: 5.84 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -2.14 Total: -85.96 kcal Atomic # 14 Polarization: 39.46 SS G_CDS: 2.03 Total: 41.49 kcal Atomic # 16 Polarization: -44.58 SS G_CDS: -1.43 Total: -46.01 kcal Atomic # 17 Polarization: -2.36 SS G_CDS: -0.08 Total: -2.43 kcal Total: -65.69 3.87 -61.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200192364.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.596 kcal (2) G-P(sol) polarization free energy of solvation -65.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.821 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds