Wall clock time and date at job start Tue Mar 31 2020 05:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38299 * 119.92183 * 2 1 4 4 C 1.38116 * 120.09602 * 179.97438 * 3 2 1 5 5 C 1.38869 * 119.93375 * 359.97438 * 4 3 2 6 6 N 1.39914 * 120.07212 * 179.97438 * 5 4 3 7 7 C 1.34779 * 120.00032 * 313.22840 * 6 5 4 8 8 S 1.71197 * 120.00034 * 4.60380 * 7 6 5 9 9 N 1.34781 * 120.00012 * 184.60568 * 7 6 5 10 10 C 1.46497 * 119.99793 * 359.97438 * 9 7 6 11 11 C 1.37040 * 119.99790 * 179.97438 * 9 7 6 12 12 H 1.08004 * 120.00380 * 23.80420 * 11 9 7 13 13 C 1.38883 * 120.00186 * 203.79950 * 11 9 7 14 14 N 1.31476 * 119.99322 * 15.79360 * 13 11 9 15 15 Si 1.86795 * 120.00272 * 195.79402 * 13 11 9 16 16 H 1.48504 * 109.47178 * 60.00218 * 15 13 11 17 17 H 1.48507 * 109.47046 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47192 * 300.00003 * 15 13 11 19 19 C 1.38975 * 119.85243 * 359.97438 * 5 4 3 20 20 Cl 1.73596 * 120.04728 * 180.02562 * 19 5 4 21 21 C 1.38219 * 119.90388 * 0.27608 * 19 5 4 22 22 H 1.09001 * 109.47197 * 90.00273 * 1 2 3 23 23 H 1.09001 * 109.47346 * 209.99731 * 1 2 3 24 24 H 1.08999 * 109.47668 * 330.00331 * 1 2 3 25 25 H 1.08002 * 119.95558 * 359.97063 * 3 2 1 26 26 H 1.07995 * 120.03189 * 179.97438 * 4 3 2 27 27 H 0.97007 * 119.99887 * 133.22808 * 6 5 4 28 28 H 1.09000 * 109.47321 * 84.86126 * 10 9 7 29 29 H 1.09007 * 109.47039 * 204.85566 * 10 9 7 30 30 H 1.08994 * 109.47595 * 324.85600 * 10 9 7 31 31 H 0.97008 * 119.99718 * 179.97438 * 14 13 11 32 32 H 1.07997 * 119.96694 * 179.69657 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1986 0.0000 4 6 3.5780 1.2028 0.0005 5 6 4.2746 0.0015 0.0016 6 7 5.6737 0.0024 0.0016 7 6 6.3471 0.8015 -0.8496 8 16 5.4946 1.9006 -1.8476 9 7 7.6917 0.7353 -0.9151 10 6 8.4212 -0.2049 -0.0607 11 6 8.3763 1.5474 -1.7809 12 1 7.9333 2.4730 -2.1179 13 6 9.6400 1.1804 -2.2251 14 7 10.0540 -0.0588 -2.0785 15 14 10.7513 2.4473 -3.0308 16 1 11.0142 3.5539 -2.0759 17 1 12.0361 1.8076 -3.4122 18 1 10.0875 2.9878 -4.2443 19 6 3.5789 -1.2016 0.0027 20 17 4.4446 -2.7063 0.0047 21 6 2.1967 -1.1983 -0.0031 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6548 2.1328 -0.0005 26 1 4.1156 2.1394 0.0001 27 1 6.1591 -0.5722 0.6143 28 1 8.4519 -1.1832 -0.5403 29 1 9.4381 0.1568 0.0921 30 1 7.9167 -0.2878 0.9019 31 1 10.9365 -0.3153 -2.3891 32 1 1.6551 -2.1326 -0.0072 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200338083.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:10 Heat of formation + Delta-G solvation = 40.709356 kcal Electronic energy + Delta-G solvation = -17636.758631 eV Core-core repulsion = 14749.507985 eV Total energy + Delta-G solvation = -2887.250646 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.63425 -38.11213 -36.19392 -35.36238 -32.55593 -30.89581 -30.39343 -27.50901 -26.64741 -24.91190 -22.77218 -21.49144 -20.51823 -18.73147 -17.47429 -16.73248 -15.50653 -15.43653 -15.13666 -14.52880 -14.05962 -13.71872 -13.63698 -13.56200 -13.24062 -12.70762 -12.25909 -11.96353 -11.90569 -11.68355 -11.46456 -11.17031 -11.04682 -10.92593 -10.78509 -10.62520 -10.58115 -9.91660 -9.61668 -8.82854 -8.44174 -7.75617 -6.99289 -6.65169 -5.88540 -4.38018 1.46411 1.71545 2.43141 2.54994 3.01094 3.04367 3.11651 3.30514 3.76348 3.94402 4.08925 4.50502 4.63611 5.06058 5.19570 5.39481 5.54480 5.64349 5.70380 5.76152 5.98209 6.02272 6.16528 6.25803 6.53868 6.54760 6.70642 6.87038 7.03784 7.10631 7.13403 7.53057 7.96220 8.17295 8.70867 8.88083 10.06240 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.026650 B = 0.005170 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.388673 B = 5414.611473 C = 6222.809254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.093 4.093 3 C -0.115 4.115 4 C -0.056 4.056 5 C 0.176 3.824 6 N -0.659 5.659 7 C 0.443 3.557 8 S -0.738 6.738 9 N -0.344 5.344 10 C 0.082 3.918 11 C -0.291 4.291 12 H 0.138 0.862 13 C 0.041 3.959 14 N -0.849 5.849 15 Si 0.946 3.054 16 H -0.265 1.265 17 H -0.280 1.280 18 H -0.261 1.261 19 C -0.054 4.054 20 Cl -0.080 7.080 21 C -0.115 4.115 22 H 0.067 0.933 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.124 0.876 26 H 0.156 0.844 27 H 0.395 0.605 28 H 0.074 0.926 29 H 0.093 0.907 30 H 0.037 0.963 31 H 0.282 0.718 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.150 -3.647 7.674 11.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.094 4.094 3 C -0.136 4.136 4 C -0.080 4.080 5 C 0.079 3.921 6 N -0.292 5.292 7 C 0.085 3.915 8 S -0.603 6.603 9 N -0.025 5.025 10 C -0.064 4.064 11 C -0.423 4.423 12 H 0.155 0.845 13 C -0.170 4.170 14 N -0.481 5.481 15 Si 0.770 3.230 16 H -0.190 1.190 17 H -0.205 1.205 18 H -0.186 1.186 19 C -0.084 4.084 20 Cl -0.052 7.052 21 C -0.135 4.135 22 H 0.086 0.914 23 H 0.081 0.919 24 H 0.084 0.916 25 H 0.142 0.858 26 H 0.174 0.826 27 H 0.233 0.767 28 H 0.092 0.908 29 H 0.111 0.889 30 H 0.056 0.944 31 H 0.092 0.908 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -8.114 -3.199 6.909 11.127 hybrid contribution 1.512 -0.819 0.306 1.746 sum -6.602 -4.018 7.215 10.573 Atomic orbital electron populations 1.20706 0.91205 1.02302 1.02130 1.19699 0.95776 0.92523 1.01441 1.20894 0.93637 0.97327 1.01753 1.21627 0.93696 0.98385 0.94322 1.17046 0.82021 0.91951 1.01102 1.41593 1.03807 1.44258 1.39501 1.21235 0.84137 0.94185 0.91956 1.92344 1.66201 1.46671 1.55079 1.42980 1.01479 1.28812 1.29242 1.21975 0.98295 0.94914 0.91257 1.20550 0.97144 1.02601 1.22030 0.84501 1.25736 0.98093 0.97031 0.96140 1.70033 1.20359 1.16051 1.41664 0.85637 0.77831 0.79426 0.80075 1.19000 1.20462 1.18560 1.20804 0.92482 0.85301 1.09848 1.98332 1.77340 1.32302 1.97177 1.20480 0.90910 0.98282 1.03829 0.91386 0.91949 0.91649 0.85798 0.82639 0.76680 0.90766 0.88872 0.94414 0.90782 0.85591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 10.01 36.00 0.36 -0.72 16 2 C -0.09 -1.29 5.88 -104.59 -0.62 -1.90 16 3 C -0.12 -1.77 9.69 -39.60 -0.38 -2.16 16 4 C -0.06 -1.04 7.88 -39.39 -0.31 -1.35 16 5 C 0.18 3.33 5.89 -83.66 -0.49 2.83 16 6 N -0.66 -13.12 4.72 -11.38 -0.05 -13.17 16 7 C 0.44 10.54 7.52 -86.91 -0.65 9.89 16 8 S -0.74 -19.64 24.48 -107.50 -2.63 -22.27 16 9 N -0.34 -8.17 3.01 -124.14 -0.37 -8.54 16 10 C 0.08 1.63 8.41 59.85 0.50 2.13 16 11 C -0.29 -7.39 8.98 -14.98 -0.13 -7.53 16 12 H 0.14 3.72 6.66 -52.48 -0.35 3.37 16 13 C 0.04 0.96 4.96 -17.47 -0.09 0.87 16 14 N -0.85 -20.18 10.99 55.49 0.61 -19.57 16 15 Si 0.95 18.82 29.58 -169.99 -5.03 13.79 16 16 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 17 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 18 H -0.26 -5.36 7.11 56.52 0.40 -4.95 16 19 C -0.05 -0.91 6.34 -39.32 -0.25 -1.16 16 20 Cl -0.08 -1.26 28.21 -51.86 -1.46 -2.73 16 21 C -0.11 -1.68 9.48 -39.58 -0.38 -2.05 16 22 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 24 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 25 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 26 H 0.16 3.20 6.23 -47.86 -0.30 2.90 16 27 H 0.39 6.96 6.31 -40.82 -0.26 6.71 16 28 H 0.07 1.53 7.88 -51.93 -0.41 1.13 16 29 H 0.09 1.90 6.78 -51.93 -0.35 1.55 16 30 H 0.04 0.62 6.58 -51.93 -0.34 0.28 16 31 H 0.28 6.28 8.31 -40.82 -0.34 5.94 16 32 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 296.52 15.07 4.47 4.47 Total: -1.00 -28.99 296.52 -10.16 -39.15 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -3.25 Total: 10.01 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -2.44 Total: -1.14 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.18 Total: -41.28 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.03 Total: 13.79 kcal Atomic # 16 Polarization: -19.64 SS G_CDS: -2.63 Total: -22.27 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.46 Total: -2.73 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.99 -10.16 -39.15 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200338083.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.862 kcal (2) G-P(sol) polarization free energy of solvation -28.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds