Wall clock time and date at job start Tue Mar 31 2020 05:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38299 * 119.92183 * 2 1 4 4 C 1.38116 * 120.09602 * 179.97438 * 3 2 1 5 5 C 1.38869 * 119.93375 * 359.97438 * 4 3 2 6 6 N 1.39914 * 120.07212 * 179.97438 * 5 4 3 7 7 C 1.34779 * 120.00032 * 313.22840 * 6 5 4 8 8 S 1.71197 * 120.00034 * 4.60380 * 7 6 5 9 9 N 1.34781 * 120.00012 * 184.60568 * 7 6 5 10 10 C 1.46497 * 119.99793 * 359.97438 * 9 7 6 11 11 C 1.37040 * 119.99790 * 179.97438 * 9 7 6 12 12 H 1.08004 * 120.00380 * 23.80420 * 11 9 7 13 13 C 1.38883 * 120.00186 * 203.79950 * 11 9 7 14 14 N 1.31476 * 119.99322 * 15.79360 * 13 11 9 15 15 Si 1.86795 * 120.00272 * 195.79402 * 13 11 9 16 16 H 1.48504 * 109.47178 * 60.00218 * 15 13 11 17 17 H 1.48507 * 109.47046 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47192 * 300.00003 * 15 13 11 19 19 C 1.38975 * 119.85243 * 359.97438 * 5 4 3 20 20 Cl 1.73596 * 120.04728 * 180.02562 * 19 5 4 21 21 C 1.38219 * 119.90388 * 0.27608 * 19 5 4 22 22 H 1.09001 * 109.47197 * 90.00273 * 1 2 3 23 23 H 1.09001 * 109.47346 * 209.99731 * 1 2 3 24 24 H 1.08999 * 109.47668 * 330.00331 * 1 2 3 25 25 H 1.08002 * 119.95558 * 359.97063 * 3 2 1 26 26 H 1.07995 * 120.03189 * 179.97438 * 4 3 2 27 27 H 0.97007 * 119.99887 * 133.22808 * 6 5 4 28 28 H 1.09000 * 109.47321 * 84.86126 * 10 9 7 29 29 H 1.09007 * 109.47039 * 204.85566 * 10 9 7 30 30 H 1.08994 * 109.47595 * 324.85600 * 10 9 7 31 31 H 0.97008 * 119.99718 * 179.97438 * 14 13 11 32 32 H 1.07997 * 119.96694 * 179.69657 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1986 0.0000 4 6 3.5780 1.2028 0.0005 5 6 4.2746 0.0015 0.0016 6 7 5.6737 0.0024 0.0016 7 6 6.3471 0.8015 -0.8496 8 16 5.4946 1.9006 -1.8476 9 7 7.6917 0.7353 -0.9151 10 6 8.4212 -0.2049 -0.0607 11 6 8.3763 1.5474 -1.7809 12 1 7.9333 2.4730 -2.1179 13 6 9.6400 1.1804 -2.2251 14 7 10.0540 -0.0588 -2.0785 15 14 10.7513 2.4473 -3.0308 16 1 11.0142 3.5539 -2.0759 17 1 12.0361 1.8076 -3.4122 18 1 10.0875 2.9878 -4.2443 19 6 3.5789 -1.2016 0.0027 20 17 4.4446 -2.7063 0.0047 21 6 2.1967 -1.1983 -0.0031 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5138 25 1 1.6548 2.1328 -0.0005 26 1 4.1156 2.1394 0.0001 27 1 6.1591 -0.5722 0.6143 28 1 8.4519 -1.1832 -0.5403 29 1 9.4381 0.1568 0.0921 30 1 7.9167 -0.2878 0.9019 31 1 10.9365 -0.3153 -2.3891 32 1 1.6551 -2.1326 -0.0072 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001200338083.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:09 Heat of formation + Delta-G solvation = 26.336547 kcal Electronic energy + Delta-G solvation = -17637.381883 eV Core-core repulsion = 14749.507985 eV Total energy + Delta-G solvation = -2887.873898 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.09175 -39.70909 -37.46311 -36.91250 -34.26954 -32.19375 -31.66442 -29.21850 -28.09459 -26.40604 -24.17070 -22.93126 -22.01150 -20.42884 -19.20594 -18.27814 -17.20557 -16.69278 -16.60979 -16.20031 -15.66488 -15.40740 -14.86629 -14.80724 -14.58290 -13.85683 -13.61118 -13.54061 -13.25675 -13.04084 -12.87918 -12.78406 -12.59578 -12.22617 -12.15044 -12.09985 -11.94545 -11.80156 -11.28643 -10.45520 -9.75408 -9.20874 -8.80881 -8.62596 -7.88981 -6.29357 0.11972 0.42668 0.81729 1.13134 1.36178 1.45466 1.49941 1.55875 2.06873 2.33962 2.70320 2.81873 2.83717 3.92308 4.07704 4.09640 4.35251 4.41025 4.48398 4.53719 4.83267 4.87794 4.96544 5.04101 5.15153 5.22722 5.30233 5.36722 5.47861 5.67169 5.75010 6.04300 6.28822 6.35919 6.88876 7.01839 8.25245 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.026650 B = 0.005170 C = 0.004498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.388673 B = 5414.611473 C = 6222.809254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.080 4.080 3 C -0.117 4.117 4 C -0.074 4.074 5 C 0.140 3.860 6 N -0.645 5.645 7 C 0.452 3.548 8 S -0.804 6.804 9 N -0.351 5.351 10 C 0.088 3.912 11 C -0.325 4.325 12 H 0.111 0.889 13 C 0.016 3.984 14 N -0.861 5.861 15 Si 1.005 2.995 16 H -0.258 1.258 17 H -0.263 1.263 18 H -0.274 1.274 19 C -0.058 4.058 20 Cl -0.073 7.073 21 C -0.113 4.113 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.080 0.920 25 H 0.145 0.855 26 H 0.126 0.874 27 H 0.405 0.595 28 H 0.067 0.933 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.290 0.710 32 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.212 -4.859 8.408 13.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.081 4.081 3 C -0.137 4.137 4 C -0.098 4.098 5 C 0.044 3.956 6 N -0.278 5.278 7 C 0.091 3.909 8 S -0.672 6.672 9 N -0.033 5.033 10 C -0.057 4.057 11 C -0.458 4.458 12 H 0.128 0.872 13 C -0.193 4.193 14 N -0.493 5.493 15 Si 0.826 3.174 16 H -0.183 1.183 17 H -0.187 1.187 18 H -0.199 1.199 19 C -0.088 4.088 20 Cl -0.044 7.044 21 C -0.133 4.133 22 H 0.096 0.904 23 H 0.102 0.898 24 H 0.099 0.901 25 H 0.162 0.838 26 H 0.144 0.856 27 H 0.246 0.754 28 H 0.086 0.914 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.206 -4.464 7.698 12.803 hybrid contribution 1.698 -0.535 0.143 1.786 sum -7.507 -4.998 7.841 11.951 Atomic orbital electron populations 1.20810 0.87877 1.04242 1.03265 1.20171 0.98024 0.91413 0.98493 1.21180 0.92492 0.99210 1.00837 1.21458 0.95122 0.97223 0.95984 1.17291 0.81385 0.93072 1.03845 1.41416 1.04489 1.43254 1.38642 1.20944 0.84214 0.93778 0.91975 1.92360 1.67685 1.49390 1.57741 1.43153 1.01513 1.29164 1.29480 1.22008 0.98161 0.93481 0.92025 1.20426 0.98383 1.02788 1.24172 0.87156 1.26421 0.98258 0.98640 0.95950 1.70056 1.20932 1.16790 1.41518 0.84797 0.76432 0.77502 0.78640 1.18264 1.18709 1.19890 1.20957 0.93397 0.84920 1.09546 1.98332 1.77435 1.31504 1.97137 1.20911 0.90059 0.99921 1.02371 0.90431 0.89820 0.90063 0.83759 0.85591 0.75443 0.91410 0.89331 0.91017 0.89977 0.82679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 10.01 71.23 0.71 -0.97 16 2 C -0.08 -1.98 5.88 -19.85 -0.12 -2.10 16 3 C -0.12 -3.46 9.69 22.26 0.22 -3.24 16 4 C -0.07 -2.79 7.88 22.39 0.18 -2.62 16 5 C 0.14 5.29 5.89 38.18 0.23 5.52 16 6 N -0.64 -25.89 4.72 -189.90 -0.90 -26.79 16 7 C 0.45 22.06 7.52 179.05 1.35 23.41 16 8 S -0.80 -44.66 24.48 -56.49 -1.38 -46.04 16 9 N -0.35 -17.03 3.01 -546.67 -1.64 -18.67 16 10 C 0.09 3.50 8.41 127.77 1.07 4.57 16 11 C -0.33 -17.01 8.98 84.03 0.75 -16.25 16 12 H 0.11 6.30 6.66 -2.91 -0.02 6.28 16 13 C 0.02 0.78 4.96 84.90 0.42 1.20 16 14 N -0.86 -40.54 10.99 21.66 0.24 -40.30 16 15 Si 1.01 38.49 29.58 68.60 2.03 40.52 16 16 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 17 H -0.26 -9.30 7.11 99.48 0.71 -8.59 16 18 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 19 C -0.06 -1.89 6.34 22.44 0.14 -1.75 16 20 Cl -0.07 -2.18 28.21 -2.72 -0.08 -2.26 16 21 C -0.11 -2.99 9.48 22.27 0.21 -2.78 16 22 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 23 H 0.08 1.03 8.09 -2.39 -0.02 1.01 16 24 H 0.08 1.09 8.08 -2.39 -0.02 1.07 16 25 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 26 H 0.13 5.47 6.23 -5.86 -0.04 5.44 16 27 H 0.41 14.14 6.31 -92.70 -0.58 13.55 16 28 H 0.07 2.77 7.88 -2.39 -0.02 2.75 16 29 H 0.09 3.58 6.78 -2.38 -0.02 3.57 16 30 H 0.07 2.30 6.58 -2.39 -0.02 2.28 16 31 H 0.29 12.59 8.31 -92.70 -0.77 11.82 16 32 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 Total: -1.00 -64.62 296.52 3.99 -60.63 By element: Atomic # 1 Polarization: 27.36 SS G_CDS: 0.55 Total: 27.91 kcal Atomic # 6 Polarization: -0.17 SS G_CDS: 5.16 Total: 5.00 kcal Atomic # 7 Polarization: -83.46 SS G_CDS: -2.30 Total: -85.76 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Atomic # 16 Polarization: -44.66 SS G_CDS: -1.38 Total: -46.04 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -0.08 Total: -2.26 kcal Total: -64.62 3.99 -60.63 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200338083.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.967 kcal (2) G-P(sol) polarization free energy of solvation -64.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.631 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds