Wall clock time and date at job start Tue Mar 31 2020 05:41:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46854 * 2 1 4 4 C 1.50695 * 109.47317 * 119.99881 * 2 1 3 5 5 H 1.07998 * 120.00520 * 120.00341 * 4 2 1 6 6 C 1.37879 * 120.00351 * 299.99993 * 4 2 1 7 7 N 1.31520 * 119.99655 * 0.02562 * 6 4 2 8 8 Si 1.86795 * 120.00446 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46938 * 60.00112 * 8 6 4 10 10 H 1.48501 * 109.47096 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47206 * 300.00111 * 8 6 4 12 12 N 1.46500 * 109.47136 * 240.00080 * 2 1 3 13 13 C 1.34778 * 120.00205 * 84.99725 * 12 2 1 14 14 S 1.71201 * 119.99756 * 0.02562 * 13 12 2 15 15 N 1.34773 * 120.00411 * 180.02562 * 13 12 2 16 16 C 1.39944 * 120.00284 * 185.46987 * 15 13 12 17 17 C 1.38855 * 120.07603 * 44.35750 * 16 15 13 18 18 C 1.38117 * 119.94163 * 180.02562 * 17 16 15 19 19 C 1.38299 * 120.09265 * 359.97438 * 18 17 16 20 20 C 1.38262 * 120.14787 * 0.02562 * 19 18 17 21 21 C 1.38223 * 120.06065 * 0.02562 * 20 19 18 22 22 Cl 1.73599 * 120.04313 * 179.97438 * 21 20 19 23 23 H 1.08998 * 109.47176 * 59.99894 * 1 2 3 24 24 H 1.09003 * 109.46854 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47040 * 299.99631 * 1 2 3 26 26 H 0.97000 * 119.99950 * 180.02562 * 7 6 4 27 27 H 0.97002 * 119.99997 * 264.99685 * 12 2 1 28 28 H 0.97006 * 119.99588 * 5.46915 * 15 13 12 29 29 H 1.08000 * 120.03325 * 0.02562 * 17 16 15 30 30 H 1.08001 * 119.95273 * 180.02562 * 18 17 16 31 31 H 1.07997 * 119.92150 * 180.02562 * 19 18 17 32 32 H 1.07999 * 119.96690 * 179.74368 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5884 1.1314 6 6 1.6994 -0.2393 2.4827 7 7 0.9428 0.8297 2.6034 8 14 2.3215 -1.1202 4.0079 9 1 3.8065 -1.1208 4.0081 10 1 1.8261 -0.4205 5.2204 11 1 1.8259 -2.5201 4.0078 12 7 2.0183 -0.6906 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 16 1.7404 1.6430 -2.4339 15 7 2.5958 -0.6537 -3.4578 16 6 2.8383 0.0676 -4.6322 17 6 3.5067 1.2835 -4.5766 18 6 3.7442 1.9933 -5.7374 19 6 3.3177 1.4945 -6.9547 20 6 2.6518 0.2843 -7.0145 21 6 2.4099 -0.4308 -5.8565 22 17 1.5732 -1.9500 -5.9320 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 0.7088 1.1613 3.4844 27 1 2.2491 -1.6318 -1.1526 28 1 2.7506 -1.6110 -3.4358 29 1 3.8407 1.6738 -3.6266 30 1 4.2644 2.9388 -5.6944 31 1 3.5052 2.0516 -7.8607 32 1 2.3164 -0.1005 -7.9662 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001200870324.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:37 Heat of formation + Delta-G solvation = 36.260206 kcal Electronic energy + Delta-G solvation = -17371.802309 eV Core-core repulsion = 14484.358733 eV Total energy + Delta-G solvation = -2887.443576 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.00988 -37.97981 -36.53238 -35.47517 -32.87706 -30.77540 -30.09366 -28.41461 -25.46748 -24.15546 -22.69483 -22.06012 -21.00042 -18.42941 -18.15606 -16.57058 -16.09028 -15.65058 -15.35924 -14.86981 -14.32688 -14.03713 -13.74892 -13.55205 -13.20174 -12.65176 -12.11752 -11.85752 -11.57384 -11.50230 -11.19595 -11.07267 -10.96810 -10.86381 -10.59989 -10.41680 -10.33545 -9.48248 -9.21155 -8.85721 -8.63228 -8.12986 -7.16648 -6.53489 -6.23554 -4.35590 1.00652 1.28865 2.00585 2.03763 2.48234 3.04082 3.18359 3.24714 3.25421 3.68858 4.05505 4.29771 4.76425 4.96670 5.08649 5.20487 5.33181 5.43129 5.80052 6.12576 6.15886 6.36492 6.51212 6.55394 6.79649 6.83819 6.97831 7.02683 7.34505 7.46349 7.53212 7.77492 8.01757 8.18439 8.65676 9.30467 10.81503 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.028844 B = 0.004283 C = 0.004017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.494442 B = 6535.255770 C = 6967.888521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.084 0.916 4 C -0.548 4.548 5 H 0.059 0.941 6 C 0.073 3.927 7 N -0.874 5.874 8 Si 0.905 3.095 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.276 1.276 12 N -0.637 5.637 13 C 0.553 3.447 14 S -0.642 6.642 15 N -0.652 5.652 16 C 0.161 3.839 17 C -0.059 4.059 18 C -0.109 4.109 19 C -0.112 4.112 20 C -0.111 4.111 21 C -0.049 4.049 22 Cl -0.073 7.073 23 H 0.031 0.969 24 H 0.022 0.978 25 H 0.097 0.903 26 H 0.268 0.732 27 H 0.389 0.611 28 H 0.403 0.597 29 H 0.151 0.849 30 H 0.131 0.869 31 H 0.129 0.871 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.162 -4.029 -16.482 17.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.102 0.898 4 C -0.586 4.586 5 H 0.078 0.922 6 C -0.132 4.132 7 N -0.510 5.510 8 Si 0.732 3.268 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.202 1.202 12 N -0.257 5.257 13 C 0.192 3.808 14 S -0.512 6.512 15 N -0.282 5.282 16 C 0.066 3.934 17 C -0.082 4.082 18 C -0.129 4.129 19 C -0.131 4.131 20 C -0.131 4.131 21 C -0.079 4.079 22 Cl -0.045 7.045 23 H 0.050 0.950 24 H 0.041 0.959 25 H 0.115 0.885 26 H 0.078 0.922 27 H 0.224 0.776 28 H 0.241 0.759 29 H 0.168 0.832 30 H 0.149 0.851 31 H 0.147 0.853 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.620 -2.844 -16.107 16.996 hybrid contribution 0.423 -2.463 0.954 2.675 sum 5.043 -5.307 -15.153 16.829 Atomic orbital electron populations 1.22060 0.96980 0.99105 1.02415 1.19513 0.92156 0.95391 0.77082 0.89799 1.21056 1.33712 1.13730 0.90123 0.92236 1.24825 0.94579 0.94878 0.98930 1.69895 1.34840 1.21878 1.24354 0.86460 0.79191 0.79520 0.81669 1.20092 1.20882 1.20169 1.46237 1.57897 1.13068 1.08538 1.22407 0.81227 0.95601 0.81577 1.93191 1.71640 0.94583 1.91800 1.42181 1.66345 1.10783 1.08866 1.17060 0.98763 0.94589 0.83021 1.21405 0.94274 0.92309 1.00193 1.21077 1.00170 1.00126 0.91540 1.21083 0.98534 0.95190 0.98292 1.20755 1.00673 0.95207 0.96455 1.20819 1.01937 0.90720 0.94399 1.98357 1.77031 1.30426 1.98642 0.94990 0.95879 0.88459 0.92193 0.77562 0.75914 0.83180 0.85072 0.85265 0.84976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.53 9.21 37.16 0.34 -3.19 16 2 C 0.26 6.21 2.32 -69.08 -0.16 6.05 16 3 H 0.08 2.32 6.82 -51.93 -0.35 1.96 16 4 C -0.55 -13.84 8.73 -34.44 -0.30 -14.14 16 5 H 0.06 1.43 7.74 -52.49 -0.41 1.02 16 6 C 0.07 1.89 5.30 -17.82 -0.09 1.79 16 7 N -0.87 -23.81 11.32 55.43 0.63 -23.18 16 8 Si 0.90 19.99 29.54 -169.99 -5.02 14.97 16 9 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 12 N -0.64 -12.34 5.07 -56.65 -0.29 -12.63 16 13 C 0.55 10.38 7.71 -86.92 -0.67 9.71 16 14 S -0.64 -14.39 24.09 -107.50 -2.59 -16.98 16 15 N -0.65 -9.68 4.89 -11.38 -0.06 -9.74 16 16 C 0.16 2.33 5.83 -83.66 -0.49 1.84 16 17 C -0.06 -0.85 7.88 -39.40 -0.31 -1.16 16 18 C -0.11 -1.25 10.04 -39.60 -0.40 -1.65 16 19 C -0.11 -1.12 10.04 -39.55 -0.40 -1.52 16 20 C -0.11 -1.19 9.82 -39.58 -0.39 -1.58 16 21 C -0.05 -0.62 6.34 -39.32 -0.25 -0.87 16 22 Cl -0.07 -0.87 28.16 -51.86 -1.46 -2.33 16 23 H 0.03 0.76 7.49 -51.93 -0.39 0.37 16 24 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.10 2.57 6.07 -51.93 -0.32 2.25 16 26 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 27 H 0.39 6.40 8.56 -40.82 -0.35 6.05 16 28 H 0.40 4.90 8.44 -40.82 -0.34 4.55 16 29 H 0.15 2.44 6.53 -52.49 -0.34 2.10 16 30 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 31 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 32 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 299.87 15.07 4.52 4.52 Total: -1.00 -29.48 299.87 -10.71 -40.19 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -3.33 Total: 9.90 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: -3.11 Total: -4.73 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.28 Total: -45.54 kcal Atomic # 14 Polarization: 19.99 SS G_CDS: -5.02 Total: 14.97 kcal Atomic # 16 Polarization: -14.39 SS G_CDS: -2.59 Total: -16.98 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -1.46 Total: -2.33 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -29.48 -10.71 -40.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001200870324.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.450 kcal (2) G-P(sol) polarization free energy of solvation -29.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds