Wall clock time and date at job start Tue Mar 31 2020 05:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09008 * 109.47232 * 2 1 4 4 C 1.50698 * 109.47617 * 120.00035 * 2 1 3 5 5 H 1.08000 * 120.00360 * 119.99448 * 4 2 1 6 6 C 1.37880 * 120.00044 * 300.28035 * 4 2 1 7 7 N 1.31511 * 119.99550 * 359.71582 * 6 4 2 8 8 Si 1.86795 * 120.00304 * 179.72189 * 6 4 2 9 9 H 1.48502 * 109.47179 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47480 * 119.99599 * 8 6 4 11 11 H 1.48502 * 109.47357 * 240.00028 * 8 6 4 12 12 N 1.46504 * 109.47414 * 240.00293 * 2 1 3 13 13 C 1.34775 * 119.99893 * 84.99374 * 12 2 1 14 14 S 1.71198 * 120.00362 * 0.02562 * 13 12 2 15 15 N 1.34774 * 119.99602 * 180.02562 * 13 12 2 16 16 C 1.39898 * 119.99838 * 175.77528 * 15 13 12 17 17 C 1.38912 * 120.06159 * 225.19656 * 16 15 13 18 18 C 1.38093 * 119.95269 * 179.71955 * 17 16 15 19 19 C 1.38285 * 120.08093 * 0.58216 * 18 17 16 20 20 C 1.38381 * 120.13297 * 359.69662 * 19 18 17 21 21 Cl 1.73601 * 119.97855 * 180.02562 * 20 19 18 22 22 C 1.38250 * 120.04267 * 359.97438 * 20 19 18 23 23 H 1.08997 * 109.47038 * 59.99847 * 1 2 3 24 24 H 1.08999 * 109.47071 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.46770 * 300.00032 * 1 2 3 26 26 H 0.97005 * 119.99784 * 179.97438 * 7 6 4 27 27 H 0.97001 * 119.99777 * 265.00567 * 12 2 1 28 28 H 0.96996 * 120.00355 * 355.76787 * 15 13 12 29 29 H 1.07999 * 120.02279 * 0.02562 * 17 16 15 30 30 H 1.08003 * 119.96052 * 180.27319 * 18 17 16 31 31 H 1.08005 * 119.93564 * 179.71679 * 19 18 17 32 32 H 1.07993 * 120.03903 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6947 -0.2427 2.4827 7 7 0.9386 0.8265 2.6034 8 14 2.3110 -1.1278 4.0079 9 1 3.1367 -2.2941 3.6037 10 1 3.1333 -0.1970 4.8220 11 1 1.1527 -1.5963 4.8104 12 7 2.0184 -0.6906 -1.1962 13 6 2.1470 -0.0182 -2.3572 14 16 1.7403 1.6430 -2.4339 15 7 2.5958 -0.6536 -3.4577 16 6 2.6458 0.0200 -4.6828 17 6 2.1850 -0.6002 -5.8372 18 6 2.2300 0.0689 -7.0443 19 6 2.7443 1.3510 -7.1074 20 6 3.2097 1.9700 -5.9605 21 17 3.8539 3.5799 -6.0442 22 6 3.1609 1.3076 -4.7481 23 1 -0.3633 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 0.7006 1.1554 3.4844 27 1 2.2490 -1.6317 -1.1527 28 1 2.8843 -1.5779 -3.4003 29 1 1.7873 -1.6032 -5.7898 30 1 1.8677 -0.4116 -7.9412 31 1 2.7826 1.8704 -8.0535 32 1 3.5236 1.7909 -3.8530 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201110922.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:39 Heat of formation + Delta-G solvation = 37.200602 kcal Electronic energy + Delta-G solvation = -17227.181157 eV Core-core repulsion = 14339.778360 eV Total energy + Delta-G solvation = -2887.402797 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 284.045 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.98642 -38.02805 -36.39772 -35.33197 -32.88172 -30.77121 -30.11706 -28.45974 -25.48801 -24.13900 -22.70227 -22.09030 -21.00558 -18.44568 -18.16654 -16.41980 -16.04022 -15.61725 -15.42461 -14.91335 -14.48017 -14.00820 -13.72518 -13.50561 -13.22750 -12.68051 -12.04772 -11.91863 -11.58216 -11.40691 -11.19053 -11.02624 -10.84903 -10.81134 -10.62138 -10.41283 -10.35784 -9.45322 -9.20614 -8.81439 -8.63782 -8.16994 -7.21504 -6.48209 -6.25335 -4.37302 1.03025 1.32579 1.98185 2.22997 2.46576 3.04305 3.15807 3.24234 3.25754 3.65908 4.04522 4.28270 4.81364 5.02337 5.07150 5.08144 5.35675 5.44902 5.75054 6.13979 6.21642 6.30678 6.44033 6.55253 6.77731 6.81270 6.95875 7.02130 7.34079 7.44737 7.51301 7.75722 8.00102 8.16451 8.64368 9.29023 10.79817 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.030618 B = 0.003939 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 914.283802 B = 7106.250859 C = 7524.261749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.084 0.916 4 C -0.547 4.547 5 H 0.061 0.939 6 C 0.072 3.928 7 N -0.873 5.873 8 Si 0.904 3.096 9 H -0.274 1.274 10 H -0.280 1.280 11 H -0.281 1.281 12 N -0.638 5.638 13 C 0.548 3.452 14 S -0.637 6.637 15 N -0.653 5.653 16 C 0.153 3.847 17 C -0.126 4.126 18 C -0.109 4.109 19 C -0.114 4.114 20 C -0.031 4.031 21 Cl -0.071 7.071 22 C -0.060 4.060 23 H 0.031 0.969 24 H 0.022 0.978 25 H 0.097 0.903 26 H 0.267 0.733 27 H 0.389 0.611 28 H 0.404 0.596 29 H 0.127 0.873 30 H 0.132 0.868 31 H 0.130 0.870 32 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.178 -4.582 -16.688 17.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.102 0.898 4 C -0.586 4.586 5 H 0.079 0.921 6 C -0.133 4.133 7 N -0.509 5.509 8 Si 0.732 3.268 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.207 1.207 12 N -0.258 5.258 13 C 0.187 3.813 14 S -0.505 6.505 15 N -0.282 5.282 16 C 0.058 3.942 17 C -0.147 4.147 18 C -0.129 4.129 19 C -0.133 4.133 20 C -0.060 4.060 21 Cl -0.042 7.042 22 C -0.084 4.084 23 H 0.050 0.950 24 H 0.041 0.959 25 H 0.116 0.884 26 H 0.077 0.923 27 H 0.224 0.776 28 H 0.241 0.759 29 H 0.144 0.856 30 H 0.150 0.850 31 H 0.148 0.852 32 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 3.759 -3.114 -16.302 17.017 hybrid contribution 0.636 -2.125 1.020 2.442 sum 4.395 -5.239 -15.282 16.742 Atomic orbital electron populations 1.22055 0.96929 0.99089 1.02446 1.19525 0.92157 0.95441 0.77151 0.89822 1.21130 1.33543 1.13778 0.90111 0.92133 1.24832 0.94574 0.94885 0.98979 1.69913 1.34900 1.21946 1.24159 0.86349 0.78644 0.79466 0.82380 1.19829 1.20621 1.20711 1.46218 1.57842 1.12894 1.08835 1.22445 0.81546 0.95512 0.81796 1.93245 1.72170 0.94129 1.90977 1.42129 1.64957 1.15132 1.05966 1.17155 1.00057 0.93322 0.83669 1.20993 1.00624 1.01083 0.92044 1.20726 1.00626 0.94211 0.97342 1.21014 0.99612 0.95369 0.97336 1.20595 1.03158 0.87699 0.94530 1.98360 1.85010 1.22244 1.98622 1.21556 0.95885 0.93454 0.97525 0.94988 0.95882 0.88435 0.92287 0.77561 0.75872 0.85555 0.85033 0.85219 0.82056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.48 9.21 37.16 0.34 -3.13 16 2 C 0.26 6.11 2.32 -69.08 -0.16 5.95 16 3 H 0.08 2.30 6.82 -51.92 -0.35 1.95 16 4 C -0.55 -13.71 8.73 -34.44 -0.30 -14.01 16 5 H 0.06 1.45 7.74 -52.49 -0.41 1.04 16 6 C 0.07 1.86 5.30 -17.82 -0.09 1.77 16 7 N -0.87 -23.73 11.31 55.43 0.63 -23.10 16 8 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 9 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 10 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.64 -11.99 5.07 -56.65 -0.29 -12.28 16 13 C 0.55 10.01 7.81 -86.92 -0.68 9.33 16 14 S -0.64 -14.27 23.65 -107.50 -2.54 -16.81 16 15 N -0.65 -8.94 5.32 -11.41 -0.06 -9.00 16 16 C 0.15 2.10 5.93 -83.71 -0.50 1.60 16 17 C -0.13 -1.38 9.97 -39.39 -0.39 -1.77 16 18 C -0.11 -1.08 10.04 -39.62 -0.40 -1.47 16 19 C -0.11 -1.25 9.83 -39.51 -0.39 -1.64 16 20 C -0.03 -0.42 6.32 -39.52 -0.25 -0.67 16 21 Cl -0.07 -0.95 28.95 -51.86 -1.50 -2.45 16 22 C -0.06 -0.92 7.65 -39.36 -0.30 -1.22 16 23 H 0.03 0.75 7.49 -51.93 -0.39 0.36 16 24 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.10 2.56 6.06 -51.93 -0.31 2.24 16 26 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 27 H 0.39 6.09 8.56 -40.82 -0.35 5.74 16 28 H 0.40 4.02 8.84 -40.82 -0.36 3.66 16 29 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 30 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 31 H 0.13 1.14 8.06 -52.48 -0.42 0.72 16 32 H 0.16 2.88 6.11 -44.58 -0.27 2.61 16 LS Contribution 300.50 15.07 4.53 4.53 Total: -1.00 -29.83 300.50 -10.65 -40.48 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -3.27 Total: 9.02 kcal Atomic # 6 Polarization: -2.14 SS G_CDS: -3.12 Total: -5.26 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.28 Total: -44.38 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: -14.27 SS G_CDS: -2.54 Total: -16.81 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -1.50 Total: -2.45 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -29.83 -10.65 -40.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201110922.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.677 kcal (2) G-P(sol) polarization free energy of solvation -29.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds