Wall clock time and date at job start Tue Mar 31 2020 05:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99421 * 2 1 4 4 H 1.48498 * 109.47031 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47266 * 299.99375 * 3 2 1 6 6 H 1.48495 * 109.47495 * 59.99612 * 3 2 1 7 7 C 1.37870 * 120.00622 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00239 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99827 * 359.97438 * 7 2 1 10 10 H 1.09001 * 109.47827 * 300.00378 * 9 7 2 11 11 C 1.53004 * 109.47113 * 60.00699 * 9 7 2 12 12 Cl 1.80303 * 109.47362 * 185.00101 * 11 9 7 13 13 O 1.42906 * 109.47322 * 180.02562 * 9 7 2 14 14 C 1.42894 * 114.00137 * 150.00318 * 13 9 7 15 15 C 1.50706 * 109.47263 * 179.97438 * 14 13 9 16 16 C 1.38281 * 119.98170 * 359.97438 * 15 14 13 17 17 C 1.38210 * 120.14359 * 179.97438 * 16 15 14 18 18 C 1.38283 * 120.14288 * 0.02562 * 17 16 15 19 19 C 1.38505 * 120.02841 * 0.02562 * 18 17 16 20 20 C 1.38500 * 119.98671 * 179.72349 * 15 14 13 21 21 O 1.36494 * 131.53998 * 0.67591 * 20 15 14 22 22 C 1.43989 * 105.56233 * 162.24607 * 21 20 15 23 23 O 1.36496 * 131.54146 * 180.02562 * 19 18 17 24 24 H 0.96992 * 120.00308 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46697 * 304.99559 * 11 9 7 26 26 H 1.08995 * 109.47228 * 64.99579 * 11 9 7 27 27 H 1.09001 * 109.47678 * 60.00187 * 14 13 9 28 28 H 1.08998 * 109.47532 * 300.00132 * 14 13 9 29 29 H 1.07997 * 119.93079 * 359.96313 * 16 15 14 30 30 H 1.08001 * 119.92651 * 180.02562 * 17 16 15 31 31 H 1.07995 * 119.98694 * 179.97438 * 18 17 16 32 32 H 1.08996 * 110.56901 * 268.32101 * 22 21 20 33 33 H 1.08996 * 110.69896 * 145.50742 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3467 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 -0.0005 8 1 3.0847 -1.1938 -0.0001 9 6 1.2513 -2.4990 -0.0005 10 1 0.6248 -2.5571 0.8896 11 6 0.3713 -2.5799 -1.2496 12 17 -0.6392 -4.0715 -1.1774 13 8 2.1799 -3.5852 -0.0005 14 6 1.6984 -4.7617 0.6521 15 6 2.7528 -5.8368 0.5921 16 6 3.9605 -5.5860 -0.0330 17 6 4.9301 -6.5694 -0.0896 18 6 4.6964 -7.8084 0.4782 19 6 3.4886 -8.0669 1.1051 20 6 2.5138 -7.0737 1.1675 21 8 1.4260 -7.5710 1.8251 22 6 1.5887 -9.0017 1.8140 23 8 3.0150 -9.1828 1.7324 24 1 -0.4850 0.8399 -0.0004 25 1 -0.2763 -1.7043 -1.2951 26 1 1.0027 -2.6114 -2.1375 27 1 0.7952 -5.1109 0.1518 28 1 1.4715 -4.5326 1.6933 29 1 4.1465 -4.6198 -0.4782 30 1 5.8722 -6.3697 -0.5783 31 1 5.4556 -8.5751 0.4322 32 1 1.0965 -9.4363 0.9441 33 1 1.1992 -9.4408 2.7324 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223264666.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:53 Heat of formation + Delta-G solvation = -95.139150 kcal Electronic energy + Delta-G solvation = -19967.425850 eV Core-core repulsion = 16599.238748 eV Total energy + Delta-G solvation = -3368.187101 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.04904 -38.16356 -36.87244 -36.18033 -34.73706 -33.35451 -31.35584 -29.80406 -28.91601 -25.83884 -25.58901 -25.15831 -22.76889 -21.46475 -20.87717 -17.86905 -17.60726 -17.21031 -16.56790 -16.15728 -15.68638 -14.86902 -14.61484 -14.33050 -14.20792 -13.87460 -13.37110 -13.06565 -12.89197 -12.82137 -12.47023 -12.08205 -11.95341 -11.50673 -11.23447 -11.07659 -10.84806 -10.80088 -10.72881 -10.40607 -9.89029 -9.43144 -9.35765 -8.69741 -8.59351 -8.03596 -7.90799 -6.34055 -4.40425 1.31039 1.37718 2.84921 3.15703 3.25143 3.30353 3.45557 3.51116 3.76869 4.14794 4.41938 4.66678 4.84033 4.93568 5.03405 5.19422 5.27610 5.34986 5.55862 5.66748 6.05801 6.13015 6.21776 6.25364 6.34203 6.47006 6.56384 6.60957 6.74559 6.91366 7.25301 7.28525 7.62108 7.92098 8.30964 8.76800 9.27583 10.73240 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.004673 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.596566 B = 5990.079008 C = 6722.931040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.060 3.940 3 Si 0.912 3.088 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.513 4.513 8 H 0.075 0.925 9 C 0.215 3.785 10 H 0.033 0.967 11 C -0.031 4.031 12 Cl -0.251 7.251 13 O -0.383 6.383 14 C 0.089 3.911 15 C -0.049 4.049 16 C -0.084 4.084 17 C -0.114 4.114 18 C -0.111 4.111 19 C 0.024 3.976 20 C 0.029 3.971 21 O -0.306 6.306 22 C 0.213 3.787 23 O -0.314 6.314 24 H 0.269 0.731 25 H 0.128 0.872 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.054 0.946 29 H 0.152 0.848 30 H 0.136 0.864 31 H 0.130 0.870 32 H 0.080 0.920 33 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.479 -13.176 0.289 13.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.142 4.142 3 Si 0.739 3.261 4 H -0.193 1.193 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.551 4.551 8 H 0.093 0.907 9 C 0.158 3.842 10 H 0.050 0.950 11 C -0.094 4.094 12 Cl -0.225 7.225 13 O -0.303 6.303 14 C 0.012 3.988 15 C -0.050 4.050 16 C -0.102 4.102 17 C -0.132 4.132 18 C -0.129 4.129 19 C -0.020 4.020 20 C -0.016 4.016 21 O -0.222 6.222 22 C 0.101 3.899 23 O -0.230 6.230 24 H 0.079 0.921 25 H 0.146 0.854 26 H 0.091 0.909 27 H 0.099 0.901 28 H 0.072 0.928 29 H 0.170 0.830 30 H 0.154 0.846 31 H 0.148 0.852 32 H 0.098 0.902 33 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.337 -13.228 0.404 13.927 hybrid contribution -0.214 0.563 0.176 0.628 sum 4.123 -12.665 0.579 13.331 Atomic orbital electron populations 1.69817 1.05991 1.27641 1.49471 1.24999 0.95116 0.99785 0.94305 0.86202 0.80050 0.82069 0.77819 1.19341 1.20686 1.20672 1.21104 0.94250 0.88272 1.51512 0.90714 1.20019 0.87377 0.84371 0.92414 0.94963 1.25904 0.95211 0.85533 1.02724 1.98603 1.76055 1.48929 1.98946 1.87776 1.43474 1.21471 1.77568 1.21424 0.94541 0.85491 0.97354 1.19067 0.97108 0.91643 0.97206 1.21014 0.90938 1.00415 0.97870 1.20968 0.99921 0.91971 1.00338 1.20005 0.94615 0.98528 0.99797 1.19678 0.96682 0.86026 0.99655 1.19473 0.87463 0.95459 0.99160 1.87373 1.41864 1.20357 1.72608 1.25557 0.80095 0.80412 1.03828 1.87314 1.21822 1.39032 1.74868 0.92112 0.85400 0.90909 0.90123 0.92818 0.82992 0.84607 0.85241 0.90209 0.85496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.58 11.29 55.43 0.63 -22.95 16 2 C 0.06 1.55 5.29 -17.82 -0.09 1.46 16 3 Si 0.91 20.03 29.54 -169.99 -5.02 15.01 16 4 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 7 C -0.51 -13.39 8.89 -34.44 -0.31 -13.70 16 8 H 0.07 1.96 7.81 -52.48 -0.41 1.55 16 9 C 0.21 5.25 2.38 -27.88 -0.07 5.18 16 10 H 0.03 0.86 7.79 -51.93 -0.40 0.45 16 11 C -0.03 -0.72 6.17 37.16 0.23 -0.49 16 12 Cl -0.25 -5.19 26.09 -51.86 -1.35 -6.55 16 13 O -0.38 -8.57 8.43 -35.23 -0.30 -8.86 16 14 C 0.09 1.77 5.87 36.01 0.21 1.98 16 15 C -0.05 -0.88 5.89 -104.51 -0.62 -1.49 16 16 C -0.08 -1.34 9.37 -39.58 -0.37 -1.72 16 17 C -0.11 -1.47 10.04 -39.58 -0.40 -1.87 16 18 C -0.11 -1.44 10.06 -39.47 -0.40 -1.84 16 19 C 0.02 0.35 7.15 -39.08 -0.28 0.07 16 20 C 0.03 0.48 6.86 -39.08 -0.27 0.21 16 21 O -0.31 -4.84 11.39 -45.67 -0.52 -5.36 16 22 C 0.21 2.45 8.89 101.05 0.90 3.35 16 23 O -0.31 -4.34 11.40 -45.67 -0.52 -4.86 16 24 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 25 H 0.13 3.17 5.95 -51.93 -0.31 2.86 16 26 H 0.07 1.62 8.14 -51.93 -0.42 1.19 16 27 H 0.08 1.64 5.09 -51.93 -0.26 1.38 16 28 H 0.05 1.10 8.08 -51.93 -0.42 0.68 16 29 H 0.15 2.50 7.00 -52.49 -0.37 2.13 16 30 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.13 1.33 8.06 -52.49 -0.42 0.91 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.13 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 296.89 15.07 4.47 4.47 Total: -1.00 -27.99 296.89 -7.49 -35.48 By element: Atomic # 1 Polarization: 5.90 SS G_CDS: -3.42 Total: 2.48 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -1.46 Total: -8.85 kcal Atomic # 7 Polarization: -23.58 SS G_CDS: 0.63 Total: -22.95 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -1.34 Total: -19.09 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Atomic # 17 Polarization: -5.19 SS G_CDS: -1.35 Total: -6.55 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -27.99 -7.49 -35.48 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223264666.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.659 kcal (2) G-P(sol) polarization free energy of solvation -27.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds