Wall clock time and date at job start Tue Mar 31 2020 05:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47136 * 2 1 4 4 H 1.09002 * 109.47590 * 305.00217 * 3 2 1 5 5 O 1.42901 * 109.46981 * 65.00152 * 3 2 1 6 6 C 1.34925 * 116.99824 * 269.99790 * 5 3 2 7 7 H 1.07993 * 120.00125 * 359.97438 * 6 5 3 8 8 C 1.38640 * 119.99734 * 180.02562 * 6 5 3 9 9 N 1.31584 * 120.00077 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99952 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46937 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46919 * 119.99860 * 10 8 6 13 13 H 1.48491 * 109.47132 * 239.99449 * 10 8 6 14 14 C 1.50707 * 109.47125 * 184.99957 * 3 2 1 15 15 C 1.38247 * 119.98667 * 99.99877 * 14 3 2 16 16 C 1.38215 * 120.00664 * 179.97438 * 15 14 3 17 17 C 1.38330 * 119.99152 * 0.02894 * 16 15 14 18 18 Br 1.89100 * 120.00875 * 179.97438 * 17 16 15 19 19 C 1.38320 * 119.97711 * 0.27274 * 17 16 15 20 20 C 1.38219 * 119.99023 * 359.42541 * 19 17 16 21 21 H 1.09002 * 109.46914 * 60.00075 * 1 2 3 22 22 H 1.08996 * 109.47348 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47179 * 300.00118 * 1 2 3 24 24 H 1.09006 * 109.46532 * 240.00235 * 2 1 3 25 25 H 1.08996 * 109.46989 * 120.00626 * 2 1 3 26 26 H 0.96996 * 120.00268 * 180.02562 * 9 8 6 27 27 H 1.07998 * 119.99776 * 359.97438 * 15 14 3 28 28 H 1.07998 * 120.00665 * 180.02562 * 16 15 14 29 29 H 1.08005 * 120.00516 * 179.70850 * 19 17 16 30 30 H 1.08006 * 119.99587 * 180.32216 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6620 2.0813 1.2211 6 6 0.4727 2.7183 1.2364 7 1 -0.1454 2.7294 0.3509 8 6 0.0447 3.3597 2.3886 9 7 0.7981 3.3466 3.4674 10 14 -1.6015 4.2423 2.4097 11 1 -2.2512 4.1097 1.0810 12 1 -2.4736 3.6385 3.4490 13 1 -1.3886 5.6796 2.7161 14 6 3.5420 1.4442 -0.1238 15 6 4.1340 1.6871 -1.3493 16 6 5.5114 1.6894 -1.4632 17 6 6.2976 1.4480 -0.3510 18 35 8.1822 1.4503 -0.5064 19 6 5.7047 1.1989 0.8736 20 6 4.3273 1.2030 0.9879 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 0.4985 3.7950 4.2736 27 1 3.5201 1.8751 -2.2177 28 1 5.9739 1.8796 -2.4205 29 1 6.3181 1.0057 1.7414 30 1 3.8643 1.0136 1.9451 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224378443.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:45 Heat of formation + Delta-G solvation = -19.465953 kcal Electronic energy + Delta-G solvation = -14673.297076 eV Core-core repulsion = 12093.963725 eV Total energy + Delta-G solvation = -2579.333351 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.015 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.20652 -36.80819 -33.13514 -31.73018 -31.25143 -30.73726 -29.29245 -25.62527 -23.95855 -22.49486 -21.61146 -20.02215 -17.66416 -16.50913 -15.50832 -14.94921 -14.56229 -14.07994 -13.89034 -13.43602 -13.18136 -13.06729 -12.79131 -11.69436 -11.67136 -11.39485 -11.21729 -11.01992 -10.91241 -10.59443 -10.47551 -10.31364 -10.16960 -10.06050 -9.62269 -9.13088 -8.71219 -8.26845 -8.00510 -5.98918 -3.61117 1.38995 1.62981 1.77906 3.27897 3.31835 3.35658 3.93747 4.27327 4.97700 5.13708 5.20934 5.31447 5.53418 5.68292 5.75516 5.85111 5.86022 6.04228 6.10256 6.31816 6.35252 6.47999 6.52101 6.55931 6.73964 6.81435 7.06696 7.16460 7.16801 7.44737 8.39078 9.44560 10.09520 11.21722 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.032498 B = 0.004224 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.375032 B = 6627.813232 C = 7099.551992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C 0.129 3.871 4 H 0.051 0.949 5 O -0.279 6.279 6 C -0.354 4.354 7 H 0.066 0.934 8 C 0.024 3.976 9 N -0.887 5.887 10 Si 0.920 3.080 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.283 1.283 14 C -0.047 4.047 15 C -0.114 4.114 16 C -0.098 4.098 17 C -0.098 4.098 18 Br -0.071 7.071 19 C -0.096 4.096 20 C -0.079 4.079 21 H 0.042 0.958 22 H 0.038 0.962 23 H 0.084 0.916 24 H 0.049 0.951 25 H 0.063 0.937 26 H 0.257 0.743 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.236 -5.450 -9.151 15.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.170 4.170 3 C 0.069 3.931 4 H 0.068 0.932 5 O -0.193 6.193 6 C -0.433 4.433 7 H 0.083 0.917 8 C -0.175 4.175 9 N -0.530 5.530 10 Si 0.747 3.253 11 H -0.199 1.199 12 H -0.209 1.209 13 H -0.209 1.209 14 C -0.047 4.047 15 C -0.133 4.133 16 C -0.118 4.118 17 C -0.177 4.177 18 Br 0.014 6.986 19 C -0.116 4.116 20 C -0.098 4.098 21 H 0.061 0.939 22 H 0.057 0.943 23 H 0.102 0.898 24 H 0.068 0.932 25 H 0.082 0.918 26 H 0.067 0.933 27 H 0.145 0.855 28 H 0.144 0.856 29 H 0.146 0.854 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 12.055 -5.392 -8.884 15.916 hybrid contribution -1.333 0.518 -0.137 1.436 sum 10.722 -4.874 -9.022 14.836 Atomic orbital electron populations 1.21810 0.95491 1.00125 1.03361 1.21992 0.96833 0.97364 1.00833 1.20681 0.88049 0.93061 0.91289 0.93157 1.85702 1.37392 1.68598 1.27655 1.20860 0.94285 1.30100 0.98094 0.91672 1.24908 0.98644 0.98733 0.95165 1.70013 1.36755 1.44449 1.01798 0.85968 0.82066 0.79245 0.77988 1.19893 1.20907 1.20933 1.20302 0.96622 0.94896 0.92901 1.20990 0.93834 1.00803 0.97623 1.20924 0.93467 1.00166 0.97228 1.21644 0.89083 1.09901 0.97119 1.96616 1.05351 1.98013 1.98628 1.21123 0.95347 0.99396 0.95714 1.21185 0.91950 0.96874 0.99742 0.93864 0.94251 0.89759 0.93192 0.91801 0.93269 0.85509 0.85566 0.85402 0.84073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.18 37.16 0.34 -2.39 16 2 C -0.13 -2.41 5.62 -26.73 -0.15 -2.56 16 3 C 0.13 2.66 2.54 -27.88 -0.07 2.59 16 4 H 0.05 1.03 7.66 -51.93 -0.40 0.63 16 5 O -0.28 -7.37 8.69 -16.49 -0.14 -7.52 16 6 C -0.35 -9.71 7.58 30.88 0.23 -9.48 16 7 H 0.07 1.69 7.37 -52.49 -0.39 1.31 16 8 C 0.02 0.67 5.49 -17.51 -0.10 0.57 16 9 N -0.89 -26.85 13.67 55.48 0.76 -26.09 16 10 Si 0.92 21.44 29.55 -169.99 -5.02 16.41 16 11 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 14 C -0.05 -0.86 4.97 -104.62 -0.52 -1.38 16 15 C -0.11 -1.77 9.67 -39.59 -0.38 -2.16 16 16 C -0.10 -1.41 9.79 -39.56 -0.39 -1.79 16 17 C -0.10 -1.47 6.22 -39.52 -0.25 -1.71 16 18 Br -0.07 -0.90 33.70 -68.01 -2.29 -3.20 16 19 C -0.10 -1.53 9.79 -39.56 -0.39 -1.91 16 20 C -0.08 -1.44 9.36 -39.59 -0.37 -1.81 16 21 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.08 1.80 6.29 -51.93 -0.33 1.48 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 25 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 26 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.13 1.70 8.04 -52.49 -0.42 1.28 16 28 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 29 H 0.13 1.80 8.06 -52.48 -0.42 1.38 16 30 H 0.14 2.80 7.78 -52.48 -0.41 2.39 16 LS Contribution 281.27 15.07 4.24 4.24 Total: -1.00 -29.94 281.27 -8.11 -38.05 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -3.61 Total: 0.15 kcal Atomic # 6 Polarization: -20.01 SS G_CDS: -2.04 Total: -22.04 kcal Atomic # 7 Polarization: -26.85 SS G_CDS: 0.76 Total: -26.09 kcal Atomic # 8 Polarization: -7.37 SS G_CDS: -0.14 Total: -7.52 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 35 Polarization: -0.90 SS G_CDS: -2.29 Total: -3.20 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.94 -8.11 -38.05 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378443.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.580 kcal (2) G-P(sol) polarization free energy of solvation -29.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds