Wall clock time and date at job start Tue Mar 31 2020 05:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47136 * 2 1 4 4 H 1.09002 * 109.47590 * 305.00217 * 3 2 1 5 5 O 1.42901 * 109.46981 * 65.00152 * 3 2 1 6 6 C 1.34925 * 116.99824 * 269.99790 * 5 3 2 7 7 H 1.07993 * 120.00125 * 359.97438 * 6 5 3 8 8 C 1.38640 * 119.99734 * 180.02562 * 6 5 3 9 9 N 1.31584 * 120.00077 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99952 * 179.97438 * 8 6 5 11 11 H 1.48502 * 109.46937 * 0.02562 * 10 8 6 12 12 H 1.48502 * 109.46919 * 119.99860 * 10 8 6 13 13 H 1.48491 * 109.47132 * 239.99449 * 10 8 6 14 14 C 1.50707 * 109.47125 * 184.99957 * 3 2 1 15 15 C 1.38247 * 119.98667 * 99.99877 * 14 3 2 16 16 C 1.38215 * 120.00664 * 179.97438 * 15 14 3 17 17 C 1.38330 * 119.99152 * 0.02894 * 16 15 14 18 18 Br 1.89100 * 120.00875 * 179.97438 * 17 16 15 19 19 C 1.38320 * 119.97711 * 0.27274 * 17 16 15 20 20 C 1.38219 * 119.99023 * 359.42541 * 19 17 16 21 21 H 1.09002 * 109.46914 * 60.00075 * 1 2 3 22 22 H 1.08996 * 109.47348 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47179 * 300.00118 * 1 2 3 24 24 H 1.09006 * 109.46532 * 240.00235 * 2 1 3 25 25 H 1.08996 * 109.46989 * 120.00626 * 2 1 3 26 26 H 0.96996 * 120.00268 * 180.02562 * 9 8 6 27 27 H 1.07998 * 119.99776 * 359.97438 * 15 14 3 28 28 H 1.07998 * 120.00665 * 180.02562 * 16 15 14 29 29 H 1.08005 * 120.00516 * 179.70850 * 19 17 16 30 30 H 1.08006 * 119.99587 * 180.32216 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 -0.8418 5 8 1.6620 2.0813 1.2211 6 6 0.4727 2.7183 1.2364 7 1 -0.1454 2.7294 0.3509 8 6 0.0447 3.3597 2.3886 9 7 0.7981 3.3466 3.4674 10 14 -1.6015 4.2423 2.4097 11 1 -2.2512 4.1097 1.0810 12 1 -2.4736 3.6385 3.4490 13 1 -1.3886 5.6796 2.7161 14 6 3.5420 1.4442 -0.1238 15 6 4.1340 1.6871 -1.3493 16 6 5.5114 1.6894 -1.4632 17 6 6.2976 1.4480 -0.3510 18 35 8.1822 1.4503 -0.5064 19 6 5.7047 1.1989 0.8736 20 6 4.3273 1.2030 0.9879 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5139 0.8900 24 1 1.8933 -0.5138 -0.8901 25 1 1.8933 -0.5139 0.8899 26 1 0.4985 3.7950 4.2736 27 1 3.5201 1.8751 -2.2177 28 1 5.9739 1.8796 -2.4205 29 1 6.3181 1.0057 1.7414 30 1 3.8643 1.0136 1.9451 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001224378443.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:45 Heat of formation + Delta-G solvation = -35.843764 kcal Electronic energy + Delta-G solvation = -14674.007271 eV Core-core repulsion = 12093.963725 eV Total energy + Delta-G solvation = -2580.043546 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.015 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.56427 -38.52128 -34.83693 -33.30811 -32.93954 -32.00072 -30.57393 -27.34329 -25.80070 -23.78521 -22.98314 -21.51462 -19.65985 -17.92590 -17.19885 -16.34618 -16.14654 -15.62555 -15.52614 -14.96899 -14.67316 -14.39835 -14.13696 -13.45428 -13.27837 -13.05089 -12.91258 -12.59871 -12.28402 -12.11604 -11.94000 -11.85643 -11.66136 -11.28323 -11.25518 -11.01512 -10.10543 -9.96361 -9.51075 -8.10918 -5.76146 0.10582 0.37136 0.61463 1.41694 1.45512 1.55791 2.34697 2.65450 3.23075 3.56304 3.86639 3.98396 4.04793 4.28283 4.36520 4.42293 4.48501 4.66848 4.73919 4.85489 5.04016 5.05064 5.09996 5.21151 5.25339 5.33335 5.36627 5.61434 5.71022 5.85986 6.27834 7.33304 8.12259 9.13847 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.032498 B = 0.004224 C = 0.003943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 861.375032 B = 6627.813232 C = 7099.551992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.126 4.126 3 C 0.122 3.878 4 H 0.053 0.947 5 O -0.317 6.317 6 C -0.349 4.349 7 H 0.075 0.925 8 C -0.044 4.044 9 N -0.941 5.941 10 Si 0.992 3.008 11 H -0.255 1.255 12 H -0.280 1.280 13 H -0.282 1.282 14 C -0.070 4.070 15 C -0.109 4.109 16 C -0.089 4.089 17 C -0.102 4.102 18 Br -0.044 7.044 19 C -0.097 4.097 20 C -0.101 4.101 21 H 0.054 0.946 22 H 0.065 0.935 23 H 0.044 0.956 24 H 0.082 0.918 25 H 0.048 0.952 26 H 0.256 0.744 27 H 0.152 0.848 28 H 0.159 0.841 29 H 0.140 0.860 30 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.619 -5.555 -11.546 17.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C 0.064 3.936 4 H 0.071 0.929 5 O -0.232 6.232 6 C -0.428 4.428 7 H 0.093 0.907 8 C -0.236 4.236 9 N -0.587 5.587 10 Si 0.816 3.184 11 H -0.179 1.179 12 H -0.206 1.206 13 H -0.208 1.208 14 C -0.071 4.071 15 C -0.128 4.128 16 C -0.108 4.108 17 C -0.181 4.181 18 Br 0.041 6.959 19 C -0.117 4.117 20 C -0.120 4.120 21 H 0.073 0.927 22 H 0.084 0.916 23 H 0.064 0.936 24 H 0.101 0.899 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.170 0.830 28 H 0.177 0.823 29 H 0.158 0.842 30 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 12.445 -5.514 -11.314 17.700 hybrid contribution -1.288 0.471 0.507 1.462 sum 11.157 -5.043 -10.807 16.331 Atomic orbital electron populations 1.21746 0.95350 1.01434 1.01893 1.21924 0.96893 0.95965 1.01620 1.20947 0.89806 0.93801 0.89096 0.92923 1.85654 1.37172 1.69172 1.31228 1.21266 0.94550 1.28737 0.98228 0.90711 1.26019 1.02710 1.00063 0.94814 1.70190 1.39288 1.46558 1.02676 0.84868 0.77268 0.77554 0.78749 1.17886 1.20621 1.20796 1.20251 0.95360 0.97142 0.94324 1.21221 0.94788 0.99724 0.97078 1.21292 0.92886 0.98320 0.98314 1.21868 0.90786 1.08689 0.96763 1.96646 1.02822 1.97894 1.98528 1.21204 0.94356 0.99120 0.96993 1.21006 0.93284 0.98978 0.98730 0.92706 0.91624 0.93643 0.89923 0.93308 0.93504 0.83046 0.82341 0.84177 0.87184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.22 9.18 71.98 0.66 -4.56 16 2 C -0.13 -4.55 5.62 30.59 0.17 -4.38 16 3 C 0.12 5.07 2.54 29.85 0.08 5.15 16 4 H 0.05 2.12 7.66 -2.39 -0.02 2.10 16 5 O -0.32 -17.37 8.69 -81.94 -0.71 -18.08 16 6 C -0.35 -19.50 7.58 67.92 0.51 -18.98 16 7 H 0.08 3.89 7.37 -2.91 -0.02 3.87 16 8 C -0.04 -2.51 5.49 84.83 0.47 -2.04 16 9 N -0.94 -59.21 13.67 21.61 0.30 -58.91 16 10 Si 0.99 44.56 29.55 68.60 2.03 46.58 16 11 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 13 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 14 C -0.07 -2.59 4.97 -19.86 -0.10 -2.69 16 15 C -0.11 -3.18 9.67 22.27 0.22 -2.96 16 16 C -0.09 -2.28 9.79 22.29 0.22 -2.06 16 17 C -0.10 -2.82 6.22 22.31 0.14 -2.68 16 18 Br -0.04 -1.01 33.70 -20.37 -0.69 -1.69 16 19 C -0.10 -3.05 9.79 22.28 0.22 -2.84 16 20 C -0.10 -3.82 9.36 22.26 0.21 -3.61 16 21 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 22 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 23 H 0.04 1.96 6.29 -2.39 -0.01 1.95 16 24 H 0.08 2.43 8.14 -2.38 -0.02 2.41 16 25 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 27 H 0.15 3.57 8.04 -2.91 -0.02 3.55 16 28 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 29 H 0.14 3.92 8.06 -2.91 -0.02 3.89 16 30 H 0.11 4.76 7.78 -2.91 -0.02 4.74 16 Total: -1.00 -66.35 281.27 4.84 -61.51 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: 1.12 Total: 12.25 kcal Atomic # 6 Polarization: -44.44 SS G_CDS: 2.79 Total: -41.65 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: 0.30 Total: -58.91 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.71 Total: -18.08 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 35 Polarization: -1.01 SS G_CDS: -0.69 Total: -1.69 kcal Total: -66.35 4.84 -61.51 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224378443.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.664 kcal (2) G-P(sol) polarization free energy of solvation -66.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds