Wall clock time and date at job start Tue Mar 31 2020 05:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86795 * 120.00199 * 2 1 4 4 H 1.48504 * 109.46901 * 0.02562 * 3 2 1 5 5 H 1.48497 * 109.47365 * 119.99752 * 3 2 1 6 6 H 1.48501 * 109.47320 * 240.00271 * 3 2 1 7 7 C 1.37875 * 119.99957 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00352 * 186.04983 * 7 2 1 9 9 C 1.50703 * 119.99822 * 6.05310 * 7 2 1 10 10 H 1.08998 * 109.47269 * 25.08867 * 9 7 2 11 11 O 1.42903 * 109.46933 * 145.08628 * 9 7 2 12 12 C 1.42904 * 114.00041 * 269.99902 * 11 9 7 13 13 C 1.52997 * 109.47086 * 180.02562 * 12 11 9 14 14 Br 1.96598 * 109.47384 * 64.99890 * 13 12 11 15 15 C 1.50697 * 109.47277 * 265.08383 * 9 7 2 16 16 C 1.38237 * 120.00117 * 276.27390 * 15 9 7 17 17 C 1.38233 * 119.99648 * 179.78320 * 16 15 9 18 18 C 1.38231 * 120.00431 * 0.44802 * 17 16 15 19 19 C 1.38240 * 119.99810 * 359.80813 * 18 17 16 20 20 C 1.38231 * 119.99932 * 359.97438 * 19 18 17 21 21 H 0.96998 * 119.99890 * 175.51688 * 1 2 3 22 22 H 1.09002 * 109.47108 * 299.99956 * 12 11 9 23 23 H 1.08997 * 109.47268 * 60.00047 * 12 11 9 24 24 H 1.08998 * 109.47117 * 184.99952 * 13 12 11 25 25 H 1.09007 * 109.46895 * 304.99838 * 13 12 11 26 26 H 1.07991 * 120.00042 * 359.97438 * 16 15 9 27 27 H 1.08003 * 119.99696 * 180.27535 * 17 16 15 28 28 H 1.07997 * 120.00625 * 179.83176 * 18 17 16 29 29 H 1.08001 * 120.00066 * 180.02562 * 19 18 17 30 30 H 1.07998 * 120.00041 * 180.02562 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1029 1.6964 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0800 -1.1967 0.0991 9 6 1.2573 -2.4956 -0.1365 10 1 0.3132 -2.3199 -0.6521 11 8 2.0456 -3.4206 -0.8882 12 6 1.8188 -3.3662 -2.2980 13 6 2.7104 -4.3937 -2.9980 14 35 2.1741 -6.2053 -2.4544 15 6 0.9841 -3.0645 1.2319 16 6 1.9523 -3.8122 1.8756 17 6 1.7033 -4.3302 3.1327 18 6 0.4826 -4.1084 3.7424 19 6 -0.4876 -3.3652 3.0965 20 6 -0.2369 -2.8433 1.8412 21 1 -0.4850 -0.8375 -0.0657 22 1 0.7728 -3.5912 -2.5067 23 1 2.0561 -2.3681 -2.6660 24 1 2.6034 -4.2919 -4.0780 25 1 3.7500 -4.2232 -2.7182 26 1 2.9044 -3.9890 1.3976 27 1 2.4614 -4.9106 3.6375 28 1 0.2870 -4.5154 4.7234 29 1 -1.4412 -3.1915 3.5729 30 1 -0.9948 -2.2623 1.3368 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224577693.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:09 Heat of formation + Delta-G solvation = -31.899381 kcal Electronic energy + Delta-G solvation = -14895.982130 eV Core-core repulsion = 12316.109625 eV Total energy + Delta-G solvation = -2579.872505 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.015 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.59968 -36.83655 -33.51998 -31.85329 -30.38916 -30.06166 -28.17883 -26.08124 -23.20573 -22.16333 -21.44976 -20.40110 -17.30775 -16.25139 -15.66913 -14.93771 -14.66313 -13.84741 -13.80716 -13.55474 -13.09520 -12.85837 -12.53470 -12.11268 -11.85253 -11.47495 -11.30906 -10.90363 -10.54912 -10.31511 -10.23362 -9.77918 -9.63561 -9.50828 -9.47681 -8.63233 -8.43280 -8.11818 -7.64900 -6.55680 -4.31061 2.00713 2.20890 2.23913 3.34705 3.36185 3.54921 4.33348 4.43361 4.71524 5.12712 5.17585 5.35418 5.59975 5.62150 5.69587 5.81436 6.07214 6.13225 6.17466 6.36243 6.41364 6.67943 6.85724 6.88377 7.23758 7.33700 7.54011 7.79272 7.88951 8.01217 8.48004 8.62650 9.41405 10.78717 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.014956 B = 0.007270 C = 0.005308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.756079 B = 3850.296790 C = 5273.367185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.027 3.973 3 Si 1.069 2.931 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.604 4.604 8 H 0.060 0.940 9 C 0.229 3.771 10 H 0.034 0.966 11 O -0.386 6.386 12 C 0.072 3.928 13 C -0.068 4.068 14 Br -0.168 7.168 15 C -0.032 4.032 16 C -0.103 4.103 17 C -0.130 4.130 18 C -0.150 4.150 19 C -0.125 4.125 20 C -0.119 4.119 21 H 0.269 0.731 22 H 0.044 0.956 23 H 0.065 0.935 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.117 0.883 27 H 0.109 0.891 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.801 -9.320 -3.720 10.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.179 4.179 3 Si 0.896 3.104 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.641 4.641 8 H 0.078 0.922 9 C 0.173 3.827 10 H 0.052 0.948 11 O -0.305 6.305 12 C -0.006 4.006 13 C -0.184 4.184 14 Br -0.089 7.089 15 C -0.033 4.033 16 C -0.121 4.121 17 C -0.148 4.148 18 C -0.168 4.168 19 C -0.143 4.143 20 C -0.138 4.138 21 H 0.082 0.918 22 H 0.063 0.937 23 H 0.083 0.917 24 H 0.122 0.878 25 H 0.121 0.879 26 H 0.135 0.865 27 H 0.127 0.873 28 H 0.126 0.874 29 H 0.128 0.872 30 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.545 -8.401 -3.399 9.413 hybrid contribution 0.184 -0.995 -0.166 1.025 sum 2.729 -9.396 -3.565 10.414 Atomic orbital electron populations 1.70872 1.06813 1.31041 1.44678 1.25929 0.96399 1.02789 0.92808 0.83533 0.74999 0.75010 0.76822 1.20589 1.21203 1.21198 1.22265 0.95641 0.90872 1.55335 0.92153 1.18832 0.91507 0.86927 0.85387 0.94834 1.87764 1.66383 1.61472 1.14928 1.22217 0.96806 0.96916 0.84669 1.24799 1.03894 0.87641 1.02063 1.97321 1.93211 1.24594 1.93792 1.20348 0.92187 0.92583 0.98179 1.20864 0.99407 0.97611 0.94212 1.21004 0.96868 1.01143 0.95818 1.20849 0.94583 1.01742 0.99620 1.20935 0.98817 0.99107 0.95464 1.20945 0.97054 1.00049 0.95715 0.91817 0.93745 0.91677 0.87804 0.87876 0.86485 0.87332 0.87440 0.87209 0.86605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.27 13.63 55.43 0.76 -24.51 16 2 C 0.03 0.72 5.45 -17.82 -0.10 0.62 16 3 Si 1.07 24.13 29.91 -169.99 -5.08 19.05 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 7 C -0.60 -16.16 8.62 -34.44 -0.30 -16.46 16 8 H 0.06 1.66 7.82 -52.48 -0.41 1.25 16 9 C 0.23 5.61 2.19 -29.04 -0.06 5.55 16 10 H 0.03 0.87 5.99 -51.93 -0.31 0.56 16 11 O -0.39 -8.49 8.95 -35.23 -0.32 -8.81 16 12 C 0.07 1.31 5.87 37.16 0.22 1.53 16 13 C -0.07 -0.97 7.01 37.16 0.26 -0.71 16 14 Br -0.17 -2.57 33.74 -68.01 -2.29 -4.87 16 15 C -0.03 -0.76 4.98 -104.62 -0.52 -1.28 16 16 C -0.10 -2.22 9.35 -39.58 -0.37 -2.59 16 17 C -0.13 -2.45 10.05 -39.59 -0.40 -2.85 16 18 C -0.15 -2.70 10.05 -39.58 -0.40 -3.10 16 19 C -0.13 -2.41 10.05 -39.58 -0.40 -2.81 16 20 C -0.12 -2.65 9.54 -39.58 -0.38 -3.02 16 21 H 0.27 7.46 5.21 -40.82 -0.21 7.24 16 22 H 0.04 0.80 8.09 -51.93 -0.42 0.38 16 23 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 24 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 25 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 26 H 0.12 2.52 7.67 -52.49 -0.40 2.12 16 27 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 28 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.12 2.62 6.86 -52.49 -0.36 2.26 16 LS Contribution 280.91 15.07 4.23 4.23 Total: -1.00 -28.81 280.91 -8.59 -37.41 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -3.45 Total: 2.62 kcal Atomic # 6 Polarization: -22.68 SS G_CDS: -2.44 Total: -25.12 kcal Atomic # 7 Polarization: -25.27 SS G_CDS: 0.76 Total: -24.51 kcal Atomic # 8 Polarization: -8.49 SS G_CDS: -0.32 Total: -8.81 kcal Atomic # 14 Polarization: 24.13 SS G_CDS: -5.08 Total: 19.05 kcal Atomic # 35 Polarization: -2.57 SS G_CDS: -2.29 Total: -4.87 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -28.81 -8.59 -37.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224577693.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.508 kcal (2) G-P(sol) polarization free energy of solvation -28.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds