Wall clock time and date at job start Tue Mar 31 2020 05:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 119.99833 * 2 1 4 4 H 1.48506 * 109.47081 * 239.99577 * 3 2 1 5 5 H 1.48496 * 109.47319 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46734 * 120.00050 * 3 2 1 7 7 C 1.37882 * 120.00257 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99839 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99790 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 180.02562 * 9 7 2 11 11 O 1.42898 * 109.46964 * 60.00152 * 9 7 2 12 12 C 1.42899 * 114.00025 * 90.00040 * 11 9 7 13 13 C 1.53006 * 109.47075 * 179.97438 * 12 11 9 14 14 Br 1.96594 * 109.46668 * 65.00276 * 13 12 11 15 15 C 1.50703 * 109.47227 * 300.00125 * 9 7 2 16 16 C 1.38236 * 119.99787 * 84.72708 * 15 9 7 17 17 C 1.38241 * 119.99636 * 179.81278 * 16 15 9 18 18 C 1.38234 * 120.00115 * 0.39672 * 17 16 15 19 19 C 1.38240 * 119.99714 * 359.85290 * 18 17 16 20 20 C 1.38228 * 120.00011 * 265.00351 * 15 9 7 21 21 H 0.97002 * 120.00075 * 0.02562 * 1 2 3 22 22 H 1.09000 * 109.47064 * 299.99806 * 12 11 9 23 23 H 1.09007 * 109.47276 * 60.00167 * 12 11 9 24 24 H 1.09000 * 109.46444 * 185.00060 * 13 12 11 25 25 H 1.08996 * 109.47376 * 305.00185 * 13 12 11 26 26 H 1.07996 * 120.00216 * 359.97438 * 16 15 9 27 27 H 1.08000 * 119.99857 * 180.22806 * 17 16 15 28 28 H 1.07998 * 120.00030 * 179.84064 * 18 17 16 29 29 H 1.08003 * 119.99655 * 179.97438 * 19 18 17 30 30 H 1.08004 * 120.00508 * 359.97379 * 20 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 1.9594 -3.3276 -0.0005 11 8 0.4291 -2.5746 -1.1670 12 6 1.0736 -3.1704 -2.2947 13 6 0.1055 -3.1992 -3.4791 14 35 -0.3104 -1.3585 -4.0303 15 6 0.3851 -2.5793 1.2302 16 6 -0.8704 -2.0007 1.2308 17 6 -1.6662 -2.0776 2.3585 18 6 -1.2034 -2.7259 3.4883 19 6 0.0542 -3.3000 3.4894 20 6 0.8485 -3.2263 2.3604 21 1 -0.4850 0.8401 -0.0004 22 1 1.9552 -2.5867 -2.5596 23 1 1.3732 -4.1886 -2.0460 24 1 0.5652 -3.7326 -4.3111 25 1 -0.8132 -3.7068 -3.1853 26 1 -1.2305 -1.4910 0.3495 27 1 -2.6486 -1.6288 2.3578 28 1 -1.8242 -2.7837 4.3702 29 1 0.4159 -3.8061 4.3722 30 1 1.8310 -3.6749 2.3614 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001224577694.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:11 Heat of formation + Delta-G solvation = -14.783938 kcal Electronic energy + Delta-G solvation = -15187.931040 eV Core-core repulsion = 12608.800716 eV Total energy + Delta-G solvation = -2579.130324 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.015 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -38.23304 -36.43639 -33.09522 -31.45921 -30.19923 -29.55880 -27.85851 -26.52645 -22.91168 -21.81155 -21.12674 -20.08158 -16.74385 -15.86977 -15.41153 -14.71647 -14.39326 -14.08769 -13.49603 -13.17897 -12.69904 -12.56800 -12.18203 -11.80047 -11.45465 -11.28716 -10.93085 -10.80463 -10.62725 -10.30205 -10.05202 -9.67419 -9.25882 -9.11724 -9.05781 -8.65488 -8.09325 -7.70393 -7.38336 -5.87141 -4.20111 2.35042 2.52031 2.67620 3.31272 3.35775 3.38202 4.40001 4.72800 5.08086 5.31698 5.36507 5.60513 5.83455 5.87593 6.00651 6.04692 6.14862 6.41664 6.47995 6.62333 6.86231 6.95430 7.16897 7.34510 7.55912 7.70021 7.90746 8.08336 8.14299 8.37004 8.56707 8.97352 9.54883 10.96954 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.017616 B = 0.007960 C = 0.006451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1589.053263 B = 3516.911377 C = 4339.597204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.092 3.908 3 Si 0.885 3.115 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.278 1.278 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.247 3.753 10 H 0.015 0.985 11 O -0.359 6.359 12 C 0.068 3.932 13 C -0.070 4.070 14 Br -0.154 7.154 15 C -0.040 4.040 16 C -0.043 4.043 17 C -0.155 4.155 18 C -0.147 4.147 19 C -0.151 4.151 20 C -0.131 4.131 21 H 0.261 0.739 22 H 0.053 0.947 23 H 0.038 0.962 24 H 0.095 0.905 25 H 0.096 0.904 26 H 0.167 0.833 27 H 0.101 0.899 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 -5.639 -5.001 7.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.114 4.114 3 Si 0.713 3.287 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.204 1.204 7 C -0.584 4.584 8 H 0.075 0.925 9 C 0.192 3.808 10 H 0.033 0.967 11 O -0.279 6.279 12 C -0.010 4.010 13 C -0.186 4.186 14 Br -0.074 7.074 15 C -0.041 4.041 16 C -0.062 4.062 17 C -0.173 4.173 18 C -0.165 4.165 19 C -0.169 4.169 20 C -0.149 4.149 21 H 0.072 0.928 22 H 0.071 0.929 23 H 0.055 0.945 24 H 0.113 0.887 25 H 0.114 0.886 26 H 0.184 0.816 27 H 0.119 0.881 28 H 0.116 0.884 29 H 0.119 0.881 30 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.111 -4.821 -5.198 7.397 hybrid contribution 0.935 0.585 0.367 1.163 sum -1.176 -4.236 -4.831 6.532 Atomic orbital electron populations 1.69766 1.05620 1.25892 1.45879 1.24877 0.94658 0.98719 0.93189 0.86783 0.79914 0.83467 0.78563 1.20113 1.21116 1.20400 1.21299 0.92693 0.90820 1.53606 0.92491 1.18512 0.86850 0.94597 0.80850 0.96739 1.88072 1.39798 1.80856 1.19150 1.22147 0.94723 0.96293 0.87876 1.24659 1.03697 0.90114 1.00121 1.97347 1.95552 1.23257 1.91246 1.19999 0.94333 0.94254 0.95497 1.21908 0.92731 0.92224 0.99343 1.21165 0.99679 1.01685 0.94814 1.20809 0.96422 1.01449 0.97846 1.20685 0.95399 1.03187 0.97652 1.20784 0.98881 1.01382 0.93874 0.92804 0.92925 0.94459 0.88655 0.88580 0.81639 0.88121 0.88397 0.88136 0.87956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.09 8.50 55.43 0.47 -21.62 16 2 C 0.09 2.43 5.24 -17.82 -0.09 2.34 16 3 Si 0.89 20.97 29.54 -169.99 -5.02 15.95 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.55 -14.38 8.89 -34.44 -0.31 -14.68 16 8 H 0.06 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.25 5.96 2.59 -29.03 -0.08 5.88 16 10 H 0.01 0.33 7.70 -51.93 -0.40 -0.07 16 11 O -0.36 -8.25 8.32 -35.23 -0.29 -8.54 16 12 C 0.07 1.26 5.87 37.16 0.22 1.48 16 13 C -0.07 -1.08 7.01 37.16 0.26 -0.82 16 14 Br -0.15 -2.78 33.74 -68.01 -2.29 -5.08 16 15 C -0.04 -0.95 4.80 -104.62 -0.50 -1.46 16 16 C -0.04 -1.03 7.46 -39.58 -0.30 -1.32 16 17 C -0.15 -3.28 10.05 -39.58 -0.40 -3.68 16 18 C -0.15 -2.87 10.05 -39.58 -0.40 -3.27 16 19 C -0.15 -2.96 10.05 -39.58 -0.40 -3.36 16 20 C -0.13 -2.82 9.68 -39.59 -0.38 -3.20 16 21 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 22 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 23 H 0.04 0.62 8.09 -51.92 -0.42 0.20 16 24 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 25 H 0.10 1.43 8.14 -51.93 -0.42 1.00 16 26 H 0.17 4.26 5.50 -52.49 -0.29 3.97 16 27 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 28 H 0.10 1.63 8.06 -52.49 -0.42 1.20 16 29 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 30 H 0.10 2.02 8.06 -52.48 -0.42 1.59 16 LS Contribution 277.15 15.07 4.18 4.18 Total: -1.00 -27.44 277.15 -8.94 -36.39 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -3.61 Total: 0.82 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: -2.37 Total: -22.09 kcal Atomic # 7 Polarization: -22.09 SS G_CDS: 0.47 Total: -21.62 kcal Atomic # 8 Polarization: -8.25 SS G_CDS: -0.29 Total: -8.54 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Atomic # 35 Polarization: -2.78 SS G_CDS: -2.29 Total: -5.08 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -27.44 -8.94 -36.39 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001224577694.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.602 kcal (2) G-P(sol) polarization free energy of solvation -27.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds