Wall clock time and date at job start Tue Mar 31 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20828 * 120.00000 * 2 1 4 4 O 1.34240 * 120.00165 * 179.97438 * 2 1 3 5 5 C 1.35988 * 117.00314 * 185.32172 * 4 2 1 6 6 C 1.38714 * 119.99843 * 246.37632 * 5 4 2 7 7 C 1.38112 * 119.99589 * 179.76331 * 6 5 4 8 8 C 1.38718 * 119.99948 * 0.51162 * 7 6 5 9 9 O 1.35968 * 119.99843 * 179.76387 * 8 7 6 10 10 C 1.42899 * 116.99993 * 184.21440 * 9 8 7 11 11 H 1.08997 * 109.46829 * 21.91833 * 10 9 8 12 12 C 1.50689 * 109.47021 * 141.92305 * 10 9 8 13 13 H 1.08002 * 120.00321 * 359.97438 * 12 10 9 14 14 C 1.37881 * 119.99974 * 179.97438 * 12 10 9 15 15 N 1.31516 * 119.99954 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00141 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47036 * 60.00088 * 16 14 12 18 18 H 1.48504 * 109.47136 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46950 * 299.99775 * 16 14 12 20 20 C 1.53003 * 109.46785 * 261.92402 * 10 9 8 21 21 Cl 1.80301 * 109.47356 * 65.00062 * 20 10 9 22 22 C 1.38707 * 120.00044 * 359.74667 * 8 7 6 23 23 C 1.38109 * 120.00318 * 359.97438 * 22 8 7 24 24 H 1.09003 * 109.47327 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47526 * 300.00299 * 1 2 3 26 26 H 1.09000 * 109.47227 * 60.00498 * 1 2 3 27 27 H 1.07994 * 119.99998 * 359.97438 * 6 5 4 28 28 H 1.08004 * 119.99859 * 180.25451 * 7 6 5 29 29 H 0.96996 * 120.00408 * 179.97438 * 15 14 12 30 30 H 1.09001 * 109.46698 * 184.99935 * 20 10 9 31 31 H 1.08997 * 109.46818 * 304.99667 * 20 10 9 32 32 H 1.08008 * 120.00058 * 179.97438 * 22 8 7 33 33 H 1.08002 * 120.00402 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1782 -1.1625 0.0005 5 6 3.5317 -1.0940 0.1129 6 6 4.3364 -1.4887 -0.9458 7 6 5.7109 -1.4144 -0.8334 8 6 6.2869 -0.9551 0.3419 9 8 7.6402 -0.8865 0.4543 10 6 8.1667 -0.4927 1.7230 11 1 7.4241 -0.6800 2.4985 12 6 9.4128 -1.2870 2.0182 13 1 9.7670 -2.0197 1.3081 14 6 10.1007 -1.0785 3.1947 15 7 9.6697 -0.1859 4.0591 16 14 11.6449 -2.0637 3.5610 17 1 12.6566 -1.8095 2.5041 18 1 12.1922 -1.6543 4.8795 19 1 11.3133 -3.5108 3.5911 20 6 8.5077 0.9986 1.6929 21 17 6.9946 1.9570 1.4861 22 6 5.4823 -0.5654 1.4025 23 6 4.1077 -0.6342 1.2881 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.8880 -1.8509 -1.8591 28 1 6.3374 -1.7179 -1.6592 29 1 10.1534 -0.0394 4.8870 30 1 8.9908 1.2797 2.6287 31 1 9.1822 1.2003 0.8608 32 1 5.9308 -0.2082 2.3178 33 1 3.4812 -0.3312 2.1140 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225492587.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:17 Heat of formation + Delta-G solvation = -102.185928 kcal Electronic energy + Delta-G solvation = -19874.714439 eV Core-core repulsion = 16506.221767 eV Total energy + Delta-G solvation = -3368.492673 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.05974 -39.27334 -37.37331 -35.97862 -34.81748 -33.44456 -30.85618 -30.68128 -29.64499 -28.08431 -25.36456 -23.14898 -23.08174 -21.09722 -20.28432 -18.12750 -17.47866 -17.01880 -16.67995 -16.26647 -15.14087 -14.63863 -14.50886 -14.31478 -13.94379 -13.53166 -13.18049 -13.04180 -12.83492 -12.77092 -12.25031 -12.08773 -12.07246 -11.57699 -11.35336 -11.17840 -11.00689 -10.76747 -10.52672 -10.40596 -10.22980 -9.66556 -9.41640 -9.15930 -8.70692 -8.59153 -7.40471 -6.46317 -4.54650 1.57338 1.72576 2.18913 2.97207 3.12679 3.18787 3.21099 3.39311 3.99171 4.18692 4.35204 4.71402 4.89952 5.00920 5.05987 5.19402 5.26918 5.44866 5.67315 5.83810 5.91395 6.17707 6.22102 6.27503 6.39399 6.63080 6.71465 6.77217 6.90537 7.07193 7.17726 7.51317 7.72309 7.93925 8.25618 8.62295 9.13319 10.60569 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.028493 B = 0.004404 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.447123 B = 6356.973548 C = 6746.523047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.445 3.555 3 O -0.494 6.494 4 O -0.290 6.290 5 C 0.016 3.984 6 C -0.082 4.082 7 C -0.156 4.156 8 C 0.164 3.836 9 O -0.307 6.307 10 C 0.204 3.796 11 H 0.053 0.947 12 C -0.525 4.525 13 H 0.076 0.924 14 C 0.064 3.936 15 N -0.889 5.889 16 Si 0.917 3.083 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.272 1.272 20 C -0.037 4.037 21 Cl -0.238 7.238 22 C -0.179 4.179 23 C -0.083 4.083 24 H 0.091 0.909 25 H 0.104 0.896 26 H 0.103 0.897 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.273 0.727 30 H 0.134 0.866 31 H 0.075 0.925 32 H 0.146 0.854 33 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.635 -1.275 -5.509 13.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.289 3.711 3 O -0.380 6.380 4 O -0.205 6.205 5 C -0.025 4.025 6 C -0.100 4.100 7 C -0.175 4.175 8 C 0.117 3.883 9 O -0.220 6.220 10 C 0.149 3.851 11 H 0.070 0.930 12 C -0.563 4.563 13 H 0.095 0.905 14 C -0.139 4.139 15 N -0.526 5.526 16 Si 0.744 3.256 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.197 1.197 20 C -0.099 4.099 21 Cl -0.212 7.212 22 C -0.198 4.198 23 C -0.101 4.101 24 H 0.110 0.890 25 H 0.123 0.877 26 H 0.122 0.878 27 H 0.146 0.854 28 H 0.151 0.849 29 H 0.083 0.917 30 H 0.152 0.848 31 H 0.094 0.906 32 H 0.164 0.836 33 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.315 -0.830 -5.480 13.505 hybrid contribution 0.726 -0.131 0.531 0.909 sum -11.589 -0.960 -4.948 12.638 Atomic orbital electron populations 1.21562 0.86943 1.05710 1.05760 1.24267 0.92046 0.82073 0.72758 1.90748 1.70584 1.32705 1.43935 1.84635 1.18751 1.34383 1.82720 1.18260 0.79789 1.08998 0.95414 1.20615 0.92481 1.00072 0.96834 1.20213 0.93572 1.06140 0.97595 1.19200 0.84500 0.91383 0.93261 1.86151 1.15767 1.81612 1.38435 1.20589 0.95466 0.89667 0.79381 0.92982 1.21017 1.08891 1.21688 1.04654 0.90537 1.24987 0.98387 0.95392 0.95134 1.69783 1.40010 1.32819 1.09967 0.86218 0.81540 0.80181 0.77697 1.19710 1.20838 1.19695 1.25738 0.84947 0.93076 1.06165 1.98657 1.46156 1.77934 1.98446 1.21432 0.93018 1.04507 1.00833 1.20927 0.95075 0.97863 0.96276 0.89031 0.87742 0.87822 0.85352 0.84861 0.91689 0.84786 0.90627 0.83645 0.86297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.05 10.42 36.00 0.38 -0.67 16 2 C 0.45 6.03 7.83 36.00 0.28 6.31 16 3 O -0.49 -8.80 16.41 -18.75 -0.31 -9.11 16 4 O -0.29 -4.29 10.04 -23.75 -0.24 -4.53 16 5 C 0.02 0.28 5.35 -39.23 -0.21 0.07 16 6 C -0.08 -1.33 9.98 -39.45 -0.39 -1.72 16 7 C -0.16 -2.78 9.98 -39.45 -0.39 -3.18 16 8 C 0.16 3.40 6.19 -39.23 -0.24 3.16 16 9 O -0.31 -7.07 9.69 -19.64 -0.19 -7.26 16 10 C 0.20 4.93 2.15 -27.89 -0.06 4.87 16 11 H 0.05 1.33 5.43 -51.93 -0.28 1.04 16 12 C -0.52 -13.53 8.89 -34.44 -0.31 -13.84 16 13 H 0.08 1.98 7.81 -52.49 -0.41 1.57 16 14 C 0.06 1.62 5.29 -17.82 -0.09 1.53 16 15 N -0.89 -22.92 11.29 55.43 0.63 -22.29 16 16 Si 0.92 19.70 29.54 -169.99 -5.02 14.68 16 17 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 20 C -0.04 -0.84 6.17 37.16 0.23 -0.61 16 21 Cl -0.24 -5.09 25.76 -51.86 -1.34 -6.43 16 22 C -0.18 -3.63 7.21 -39.46 -0.28 -3.91 16 23 C -0.08 -1.52 9.17 -39.45 -0.36 -1.88 16 24 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 28 H 0.13 2.10 8.06 -52.48 -0.42 1.68 16 29 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 30 H 0.13 3.27 5.95 -51.93 -0.31 2.96 16 31 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 32 H 0.15 3.11 4.89 -52.48 -0.26 2.86 16 33 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 301.81 15.07 4.55 4.55 Total: -1.00 -28.91 301.81 -6.73 -35.64 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -3.35 Total: 4.63 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -1.46 Total: -9.88 kcal Atomic # 7 Polarization: -22.92 SS G_CDS: 0.63 Total: -22.29 kcal Atomic # 8 Polarization: -20.16 SS G_CDS: -0.74 Total: -20.90 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Atomic # 17 Polarization: -5.09 SS G_CDS: -1.34 Total: -6.43 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.91 -6.73 -35.64 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225492587.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.543 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds