Wall clock time and date at job start Tue Mar 31 2020 06:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.20828 * 120.00000 * 2 1 4 4 O 1.34240 * 120.00165 * 179.97438 * 2 1 3 5 5 C 1.35988 * 117.00314 * 185.32172 * 4 2 1 6 6 C 1.38714 * 119.99843 * 246.37632 * 5 4 2 7 7 C 1.38112 * 119.99589 * 179.76331 * 6 5 4 8 8 C 1.38718 * 119.99948 * 0.51162 * 7 6 5 9 9 O 1.35968 * 119.99843 * 179.76387 * 8 7 6 10 10 C 1.42899 * 116.99993 * 184.21440 * 9 8 7 11 11 H 1.08997 * 109.46829 * 21.91833 * 10 9 8 12 12 C 1.50689 * 109.47021 * 141.92305 * 10 9 8 13 13 H 1.08002 * 120.00321 * 359.97438 * 12 10 9 14 14 C 1.37881 * 119.99974 * 179.97438 * 12 10 9 15 15 N 1.31516 * 119.99954 * 359.97438 * 14 12 10 16 16 Si 1.86800 * 120.00141 * 179.97438 * 14 12 10 17 17 H 1.48500 * 109.47036 * 60.00088 * 16 14 12 18 18 H 1.48504 * 109.47136 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.46950 * 299.99775 * 16 14 12 20 20 C 1.53003 * 109.46785 * 261.92402 * 10 9 8 21 21 Cl 1.80301 * 109.47356 * 65.00062 * 20 10 9 22 22 C 1.38707 * 120.00044 * 359.74667 * 8 7 6 23 23 C 1.38109 * 120.00318 * 359.97438 * 22 8 7 24 24 H 1.09003 * 109.47327 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47526 * 300.00299 * 1 2 3 26 26 H 1.09000 * 109.47227 * 60.00498 * 1 2 3 27 27 H 1.07994 * 119.99998 * 359.97438 * 6 5 4 28 28 H 1.08004 * 119.99859 * 180.25451 * 7 6 5 29 29 H 0.96996 * 120.00408 * 179.97438 * 15 14 12 30 30 H 1.09001 * 109.46698 * 184.99935 * 20 10 9 31 31 H 1.08997 * 109.46818 * 304.99667 * 20 10 9 32 32 H 1.08008 * 120.00058 * 179.97438 * 22 8 7 33 33 H 1.08002 * 120.00402 * 179.97438 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1111 1.0464 0.0000 4 8 2.1782 -1.1625 0.0005 5 6 3.5317 -1.0940 0.1129 6 6 4.3364 -1.4887 -0.9458 7 6 5.7109 -1.4144 -0.8334 8 6 6.2869 -0.9551 0.3419 9 8 7.6402 -0.8865 0.4543 10 6 8.1667 -0.4927 1.7230 11 1 7.4241 -0.6800 2.4985 12 6 9.4128 -1.2870 2.0182 13 1 9.7670 -2.0197 1.3081 14 6 10.1007 -1.0785 3.1947 15 7 9.6697 -0.1859 4.0591 16 14 11.6449 -2.0637 3.5610 17 1 12.6566 -1.8095 2.5041 18 1 12.1922 -1.6543 4.8795 19 1 11.3133 -3.5108 3.5911 20 6 8.5077 0.9986 1.6929 21 17 6.9946 1.9570 1.4861 22 6 5.4823 -0.5654 1.4025 23 6 4.1077 -0.6342 1.2881 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 3.8880 -1.8509 -1.8591 28 1 6.3374 -1.7179 -1.6592 29 1 10.1534 -0.0394 4.8870 30 1 8.9908 1.2797 2.6287 31 1 9.1822 1.2003 0.8608 32 1 5.9308 -0.2082 2.3178 33 1 3.4812 -0.3312 2.1140 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225492587.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:05:17 Heat of formation + Delta-G solvation = -117.385111 kcal Electronic energy + Delta-G solvation = -19875.373525 eV Core-core repulsion = 16506.221767 eV Total energy + Delta-G solvation = -3369.151759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.28414 -40.81566 -38.76339 -37.40140 -36.58181 -35.32859 -32.30072 -31.75657 -31.21316 -29.47764 -27.30168 -24.69766 -24.40396 -22.60444 -21.70861 -19.52255 -18.94774 -18.77706 -17.83296 -17.65735 -16.83121 -16.19397 -16.10718 -15.78246 -15.24080 -15.14031 -14.62455 -14.40464 -14.09911 -13.91623 -13.69350 -13.43769 -13.31483 -13.15298 -13.00581 -12.77674 -12.71693 -12.42409 -12.07911 -11.82754 -11.68923 -11.43895 -11.19924 -10.93484 -10.59627 -10.02990 -8.94678 -8.38272 -6.55051 0.17733 0.29529 1.11592 1.40403 1.43838 1.53190 1.58376 1.85912 2.25468 2.64398 2.76283 2.96826 3.70423 3.78151 3.89779 4.16837 4.27700 4.36111 4.42683 4.43464 4.57025 4.63175 4.78908 4.87477 4.98341 5.11421 5.15815 5.27531 5.39449 5.47639 5.55151 5.80181 5.82089 6.43061 6.73660 6.81768 7.17513 8.67932 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.028493 B = 0.004404 C = 0.004149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.447123 B = 6356.973548 C = 6746.523047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.444 3.556 3 O -0.542 6.542 4 O -0.286 6.286 5 C 0.020 3.980 6 C -0.075 4.075 7 C -0.152 4.152 8 C 0.130 3.870 9 O -0.322 6.322 10 C 0.210 3.790 11 H 0.033 0.967 12 C -0.551 4.551 13 H 0.069 0.931 14 C 0.027 3.973 15 N -0.910 5.910 16 Si 0.979 3.021 17 H -0.266 1.266 18 H -0.276 1.276 19 H -0.270 1.270 20 C -0.027 4.027 21 Cl -0.225 7.225 22 C -0.190 4.190 23 C -0.094 4.094 24 H 0.116 0.884 25 H 0.121 0.879 26 H 0.125 0.875 27 H 0.167 0.833 28 H 0.154 0.846 29 H 0.276 0.724 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.125 0.875 33 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.148 -2.048 -6.570 15.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.290 3.710 3 O -0.431 6.431 4 O -0.201 6.201 5 C -0.022 4.022 6 C -0.093 4.093 7 C -0.170 4.170 8 C 0.084 3.916 9 O -0.235 6.235 10 C 0.155 3.845 11 H 0.050 0.950 12 C -0.588 4.588 13 H 0.087 0.913 14 C -0.175 4.175 15 N -0.547 5.547 16 Si 0.802 3.198 17 H -0.191 1.191 18 H -0.201 1.201 19 H -0.195 1.195 20 C -0.090 4.090 21 Cl -0.199 7.199 22 C -0.209 4.209 23 C -0.113 4.113 24 H 0.134 0.866 25 H 0.140 0.860 26 H 0.143 0.857 27 H 0.185 0.815 28 H 0.172 0.828 29 H 0.086 0.914 30 H 0.137 0.863 31 H 0.096 0.904 32 H 0.143 0.857 33 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -13.864 -1.609 -6.549 15.417 hybrid contribution 0.985 0.123 0.816 1.285 sum -12.879 -1.486 -5.733 14.175 Atomic orbital electron populations 1.21775 0.81670 1.07967 1.07473 1.25557 0.94051 0.80703 0.70679 1.90741 1.71869 1.34116 1.46355 1.84671 1.17301 1.35424 1.82710 1.18444 0.81306 1.07400 0.95016 1.21014 0.91701 0.98726 0.97876 1.20532 0.94598 1.04929 0.96989 1.19530 0.83580 0.93709 0.94800 1.86087 1.17369 1.82534 1.37545 1.20333 0.94517 0.90074 0.79614 0.94968 1.21260 1.09946 1.22395 1.05240 0.91252 1.25749 1.00941 0.96114 0.94650 1.69876 1.41019 1.33593 1.10210 0.85271 0.78045 0.78708 0.77736 1.19096 1.20132 1.19461 1.25442 0.85369 0.92821 1.05331 1.98651 1.45354 1.77475 1.98394 1.21281 0.93874 1.05557 1.00205 1.21050 0.94440 0.98348 0.97431 0.86563 0.86044 0.85711 0.81512 0.82810 0.91422 0.86301 0.90395 0.85696 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.45 10.42 71.23 0.74 -0.70 16 2 C 0.44 11.02 7.83 71.23 0.56 11.57 16 3 O -0.54 -18.74 16.41 21.96 0.36 -18.38 16 4 O -0.29 -7.79 10.04 4.05 0.04 -7.75 16 5 C 0.02 0.64 5.35 22.50 0.12 0.76 16 6 C -0.08 -2.27 9.98 22.35 0.22 -2.05 16 7 C -0.15 -5.24 9.98 22.35 0.22 -5.02 16 8 C 0.13 5.48 6.19 22.50 0.14 5.62 16 9 O -0.32 -15.25 9.69 -93.19 -0.90 -16.15 16 10 C 0.21 10.53 2.15 29.85 0.06 10.59 16 11 H 0.03 1.75 5.43 -2.39 -0.01 1.73 16 12 C -0.55 -29.16 8.89 25.60 0.23 -28.93 16 13 H 0.07 3.67 7.81 -2.91 -0.02 3.65 16 14 C 0.03 1.37 5.29 84.66 0.45 1.81 16 15 N -0.91 -47.77 11.29 21.45 0.24 -47.52 16 16 Si 0.98 40.38 29.54 68.60 2.03 42.41 16 17 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 18 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 19 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 20 C -0.03 -1.27 6.17 71.98 0.44 -0.82 16 21 Cl -0.22 -9.83 25.76 -2.72 -0.07 -9.90 16 22 C -0.19 -7.94 7.21 22.35 0.16 -7.78 16 23 C -0.09 -3.47 9.17 22.35 0.20 -3.27 16 24 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.17 3.72 8.06 -2.91 -0.02 3.69 16 28 H 0.15 4.57 8.06 -2.91 -0.02 4.55 16 29 H 0.28 13.67 8.31 -92.71 -0.77 12.90 16 30 H 0.12 6.00 5.95 -2.39 -0.01 5.98 16 31 H 0.08 3.57 8.14 -2.39 -0.02 3.55 16 32 H 0.13 5.66 4.89 -2.91 -0.01 5.65 16 33 H 0.13 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -63.82 301.81 6.39 -57.43 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: 1.14 Total: 18.07 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 3.56 Total: -18.20 kcal Atomic # 7 Polarization: -47.77 SS G_CDS: 0.24 Total: -47.52 kcal Atomic # 8 Polarization: -41.79 SS G_CDS: -0.50 Total: -42.29 kcal Atomic # 14 Polarization: 40.38 SS G_CDS: 2.03 Total: 42.41 kcal Atomic # 17 Polarization: -9.83 SS G_CDS: -0.07 Total: -9.90 kcal Total: -63.82 6.39 -57.43 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225492587.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.954 kcal (2) G-P(sol) polarization free energy of solvation -63.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds