Wall clock time and date at job start Tue Mar 31 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21339 * 120.00004 * 2 1 4 4 C 1.46490 * 120.00246 * 179.97438 * 2 1 3 5 5 C 1.40182 * 120.16182 * 0.23310 * 4 2 1 6 6 C 1.36423 * 120.05267 * 180.27262 * 5 4 2 7 7 C 1.39282 * 120.41013 * 359.77524 * 6 5 4 8 8 O 1.35669 * 119.83329 * 179.97438 * 7 6 5 9 9 C 1.38739 * 120.33218 * 359.97121 * 7 6 5 10 10 C 1.38423 * 119.93231 * 0.02562 * 9 7 6 11 11 O 1.35602 * 120.19865 * 180.02562 * 10 9 7 12 12 C 1.42902 * 116.99903 * 4.81762 * 11 10 9 13 13 H 1.09001 * 109.47526 * 21.64373 * 12 11 10 14 14 C 1.50699 * 109.46956 * 141.64284 * 12 11 10 15 15 H 1.08004 * 120.00346 * 34.98980 * 14 12 11 16 16 C 1.37879 * 120.00090 * 214.98375 * 14 12 11 17 17 N 1.31512 * 120.00125 * 184.83628 * 16 14 12 18 18 Si 1.86808 * 119.99859 * 4.83820 * 16 14 12 19 19 H 1.48498 * 109.47080 * 84.74593 * 18 16 14 20 20 H 1.48500 * 109.46752 * 204.74959 * 18 16 14 21 21 H 1.48503 * 109.46767 * 324.74831 * 18 16 14 22 22 C 1.52998 * 109.47223 * 261.64306 * 12 11 10 23 23 Cl 1.80300 * 109.47161 * 64.65028 * 22 12 11 24 24 H 1.08999 * 109.47632 * 240.00102 * 1 2 3 25 25 H 1.09002 * 109.47028 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46905 * 120.00132 * 1 2 3 27 27 H 1.07995 * 119.97167 * 0.02644 * 5 4 2 28 28 H 1.08003 * 119.79305 * 179.74443 * 6 5 4 29 29 H 0.96692 * 113.99914 * 270.01782 * 8 7 6 30 30 H 1.08003 * 120.03026 * 180.02562 * 9 7 6 31 31 H 0.97003 * 119.99697 * 180.02562 * 17 16 14 32 32 H 1.09000 * 109.47233 * 184.65213 * 22 12 11 33 33 H 1.09006 * 109.47388 * 304.65173 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0508 0.0000 4 6 2.2395 -1.2686 0.0006 5 6 1.5421 -2.4846 -0.0038 6 6 2.2264 -3.6648 0.0023 7 6 3.6192 -3.6720 0.0083 8 8 4.2880 -4.8524 0.0149 9 6 4.3261 -2.4782 0.0074 10 6 3.6459 -1.2727 0.0011 11 8 4.3314 -0.1027 -0.0003 12 6 5.7544 -0.1847 -0.1020 13 1 6.0328 -1.1435 -0.5392 14 6 6.2606 0.9325 -0.9776 15 1 5.7726 1.8959 -0.9600 16 6 7.3467 0.7250 -1.8011 17 7 7.8475 1.7246 -2.4935 18 14 8.1070 -0.9763 -1.9333 19 1 7.3634 -1.7737 -2.9415 20 1 9.5272 -0.8528 -2.3492 21 1 8.0346 -1.6547 -0.6143 22 6 6.3733 -0.0608 1.2917 23 17 5.8761 -1.4720 2.2978 24 1 -0.3634 -0.5138 0.8900 25 1 -0.3633 1.0277 -0.0005 26 1 -0.3633 -0.5139 -0.8900 27 1 0.4621 -2.4872 -0.0081 28 1 1.6849 -4.5992 0.0031 29 1 4.4778 -5.1919 0.9001 30 1 5.4061 -2.4896 0.0116 31 1 8.6115 1.5784 -3.0731 32 1 7.4598 -0.0403 1.2063 33 1 6.0284 0.8602 1.7619 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225617792.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:10 Heat of formation + Delta-G solvation = -101.298929 kcal Electronic energy + Delta-G solvation = -20569.422498 eV Core-core repulsion = 17200.968289 eV Total energy + Delta-G solvation = -3368.454209 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.24733 -38.40106 -38.04644 -35.92535 -35.20660 -33.26725 -31.13272 -30.80231 -29.55050 -28.39253 -25.41431 -23.48280 -22.72697 -20.63677 -19.72194 -18.74197 -17.26428 -16.74698 -16.12280 -15.80963 -15.26605 -14.64154 -14.62361 -14.28872 -14.21820 -13.84156 -13.48114 -13.13587 -12.85841 -12.80858 -12.39211 -12.05594 -11.97576 -11.71664 -11.38003 -11.29027 -11.12704 -10.77005 -10.55885 -10.12259 -9.92233 -9.69679 -9.47705 -9.16310 -8.92897 -8.53729 -7.72706 -6.47660 -4.55016 0.92360 1.72842 2.74832 2.86784 3.06268 3.10791 3.15578 3.86971 3.92860 4.04961 4.29759 4.46917 4.85563 4.98284 5.25422 5.29941 5.47014 5.52574 5.56222 5.62272 5.73169 5.86108 5.91716 6.01845 6.08575 6.38475 6.46041 6.54023 6.62709 6.84761 7.11627 7.66542 7.86079 8.07702 8.28845 8.69719 9.08283 10.62794 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.014638 B = 0.007760 C = 0.006526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.348135 B = 3607.456925 C = 4289.497364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.385 3.615 3 O -0.433 6.433 4 C -0.236 4.236 5 C -0.025 4.025 6 C -0.213 4.213 7 C 0.171 3.829 8 O -0.500 6.500 9 C -0.244 4.244 10 C 0.228 3.772 11 O -0.264 6.264 12 C 0.168 3.832 13 H 0.051 0.949 14 C -0.522 4.522 15 H 0.094 0.906 16 C 0.087 3.913 17 N -0.867 5.867 18 Si 0.859 3.141 19 H -0.264 1.264 20 H -0.275 1.275 21 H -0.260 1.260 22 C -0.034 4.034 23 Cl -0.233 7.233 24 H 0.086 0.914 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.134 0.866 28 H 0.127 0.873 29 H 0.392 0.608 30 H 0.144 0.856 31 H 0.274 0.726 32 H 0.100 0.900 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.024 -10.587 6.707 16.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.262 3.738 3 O -0.307 6.307 4 C -0.238 4.238 5 C -0.043 4.043 6 C -0.232 4.232 7 C 0.126 3.874 8 O -0.310 6.310 9 C -0.263 4.263 10 C 0.177 3.823 11 O -0.173 6.173 12 C 0.112 3.888 13 H 0.069 0.931 14 C -0.559 4.559 15 H 0.112 0.888 16 C -0.119 4.119 17 N -0.501 5.501 18 Si 0.684 3.316 19 H -0.189 1.189 20 H -0.201 1.201 21 H -0.184 1.184 22 C -0.097 4.097 23 Cl -0.207 7.207 24 H 0.105 0.895 25 H 0.099 0.901 26 H 0.105 0.895 27 H 0.152 0.848 28 H 0.145 0.855 29 H 0.249 0.751 30 H 0.161 0.839 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.647 -9.755 6.041 14.991 hybrid contribution 0.781 -1.327 0.377 1.585 sum -8.865 -11.082 6.419 15.575 Atomic orbital electron populations 1.22217 0.94719 1.04528 1.03764 1.21996 0.90923 0.87805 0.73091 1.90667 1.71657 1.33636 1.34717 1.19925 0.91038 0.95735 1.17108 1.20713 0.99450 0.90384 0.93792 1.20809 0.93168 0.98738 1.10501 1.18453 0.89755 0.84429 0.94716 1.84698 1.77302 1.35621 1.33419 1.21758 1.01983 0.91605 1.10990 1.19271 0.90797 0.86158 0.86099 1.86510 1.22365 1.25488 1.82947 1.21028 0.75946 0.99896 0.91882 0.93124 1.20723 1.14361 0.98197 1.22582 0.88804 1.24966 0.95962 0.97029 0.93987 1.69835 1.23240 1.31024 1.26021 0.87108 0.79672 0.84733 0.80065 1.18940 1.20066 1.18393 1.25985 1.02527 0.88491 0.92682 1.98657 1.93637 1.52726 1.75715 0.89525 0.90144 0.89465 0.84788 0.85498 0.75135 0.83878 0.91538 0.88145 0.88433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.15 8.92 36.00 0.32 -1.83 16 2 C 0.39 6.57 7.21 -30.99 -0.22 6.34 16 3 O -0.43 -9.50 15.89 -16.43 -0.26 -9.76 16 4 C -0.24 -4.07 5.88 -104.94 -0.62 -4.68 16 5 C -0.03 -0.33 9.41 -39.51 -0.37 -0.70 16 6 C -0.21 -2.84 9.91 -39.85 -0.39 -3.24 16 7 C 0.17 2.69 6.71 -39.01 -0.26 2.43 16 8 O -0.50 -6.87 13.48 -18.71 -0.25 -7.13 16 9 C -0.24 -4.58 7.16 -39.33 -0.28 -4.86 16 10 C 0.23 4.62 6.21 -38.61 -0.24 4.38 16 11 O -0.26 -6.21 7.75 -40.44 -0.31 -6.53 16 12 C 0.17 3.93 1.81 -27.88 -0.05 3.88 16 13 H 0.05 1.19 2.61 -51.93 -0.14 1.05 16 14 C -0.52 -14.24 9.23 -34.44 -0.32 -14.56 16 15 H 0.09 2.86 8.06 -52.48 -0.42 2.44 16 16 C 0.09 2.37 5.47 -17.82 -0.10 2.27 16 17 N -0.87 -24.81 13.96 55.43 0.77 -24.03 16 18 Si 0.86 19.84 26.99 -169.99 -4.59 15.25 16 19 H -0.26 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.26 -5.62 6.83 56.52 0.39 -5.23 16 22 C -0.03 -0.70 6.32 37.16 0.23 -0.46 16 23 Cl -0.23 -4.25 25.75 -51.86 -1.34 -5.59 16 24 H 0.09 0.74 8.09 -51.93 -0.42 0.32 16 25 H 0.08 0.88 8.12 -51.93 -0.42 0.46 16 26 H 0.09 0.78 8.07 -51.93 -0.42 0.36 16 27 H 0.13 1.22 7.03 -52.49 -0.37 0.85 16 28 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 29 H 0.39 3.46 9.06 45.56 0.41 3.87 16 30 H 0.14 2.85 4.89 -52.48 -0.26 2.59 16 31 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.10 1.98 8.14 -51.93 -0.42 1.56 16 33 H 0.10 1.96 8.14 -51.93 -0.42 1.54 16 LS Contribution 297.66 15.07 4.49 4.49 Total: -1.00 -32.01 297.66 -6.24 -38.25 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -2.45 Total: 6.08 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -2.30 Total: -11.03 kcal Atomic # 7 Polarization: -24.81 SS G_CDS: 0.77 Total: -24.03 kcal Atomic # 8 Polarization: -22.58 SS G_CDS: -0.83 Total: -23.41 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -4.59 Total: 15.25 kcal Atomic # 17 Polarization: -4.25 SS G_CDS: -1.34 Total: -5.59 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -32.01 -6.24 -38.25 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225617792.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.049 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds