Wall clock time and date at job start Tue Mar 31 2020 06:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34709 * 117.00517 * 2 1 4 4 O 1.21471 * 119.99595 * 0.02562 * 3 2 1 5 5 C 1.47735 * 120.00405 * 179.97438 * 3 2 1 6 6 C 1.39658 * 120.11942 * 0.02562 * 5 3 2 7 7 C 1.37949 * 119.95940 * 179.72281 * 6 5 3 8 8 C 1.38306 * 120.21179 * 359.97337 * 7 6 5 9 9 C 1.38814 * 120.24893 * 0.02562 * 8 7 6 10 10 O 1.35906 * 119.98124 * 180.02562 * 9 8 7 11 11 C 1.42901 * 117.00234 * 356.49902 * 10 9 8 12 12 H 1.09005 * 109.46902 * 27.09005 * 11 10 9 13 13 C 1.50701 * 109.47401 * 147.08896 * 11 10 9 14 14 H 1.08003 * 119.99825 * 0.02562 * 13 11 10 15 15 C 1.37875 * 120.00040 * 179.97438 * 13 11 10 16 16 N 1.31512 * 119.99900 * 0.02562 * 15 13 11 17 17 Si 1.86801 * 119.99872 * 180.02562 * 15 13 11 18 18 H 1.48503 * 109.46684 * 60.00525 * 17 15 13 19 19 H 1.48503 * 109.47187 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47582 * 300.00760 * 17 15 13 21 21 C 1.52996 * 109.47000 * 267.09318 * 11 10 9 22 22 Cl 1.80296 * 109.47237 * 64.99927 * 21 11 10 23 23 C 1.38482 * 120.03559 * 0.04110 * 9 8 7 24 24 H 1.08996 * 109.47680 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47172 * 299.99872 * 1 2 3 26 26 H 1.09005 * 109.46789 * 59.99496 * 1 2 3 27 27 H 1.07997 * 120.02361 * 359.69313 * 6 5 3 28 28 H 1.07995 * 119.89804 * 179.97438 * 7 6 5 29 29 H 1.07999 * 119.87175 * 180.02562 * 8 7 6 30 30 H 0.97004 * 119.99441 * 179.97438 * 16 15 13 31 31 H 1.09011 * 109.47189 * 184.99653 * 21 11 10 32 32 H 1.08998 * 109.47239 * 304.99873 * 21 11 10 33 33 H 1.07994 * 120.10786 * 179.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5390 1.2775 0.0006 6 6 4.3020 0.1078 0.0006 7 6 5.6794 0.1838 -0.0047 8 6 6.3084 1.4155 -0.0105 9 6 5.5585 2.5837 -0.0106 10 8 6.1823 3.7912 -0.0168 11 6 7.6095 3.7845 0.0546 12 1 7.9900 2.8538 -0.3664 13 6 8.1571 4.9505 -0.7275 14 1 7.4827 5.6291 -1.2286 15 6 9.5191 5.1517 -0.8023 16 7 10.3403 4.3257 -0.1917 17 14 10.1978 6.5974 -1.7712 18 1 9.6789 7.8650 -1.1973 19 1 11.6809 6.5904 -1.6970 20 1 9.7730 6.4859 -3.1897 21 6 8.0475 3.8998 1.5160 22 17 7.5178 2.4324 2.4197 23 6 4.1752 2.5194 -0.0039 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 3.8141 -0.8557 0.0052 28 1 6.2685 -0.7213 -0.0042 29 1 7.3871 1.4686 -0.0150 30 1 11.2985 4.4670 -0.2447 31 1 9.1332 3.9841 1.5644 32 1 7.5941 4.7848 1.9625 33 1 3.5907 3.4274 -0.0036 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225680122.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:01 Heat of formation + Delta-G solvation = -109.351252 kcal Electronic energy + Delta-G solvation = -19749.832943 eV Core-core repulsion = 16381.029559 eV Total energy + Delta-G solvation = -3368.803384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.45602 -39.33849 -36.99190 -36.28219 -34.91044 -33.52271 -31.08907 -30.34288 -28.82895 -27.68944 -25.39636 -24.11357 -22.21394 -21.67170 -20.09720 -18.20298 -17.12988 -16.97534 -16.31970 -16.06442 -15.57702 -15.07904 -14.65117 -14.40007 -13.87990 -13.46412 -13.38954 -13.24873 -12.93643 -12.28351 -12.19323 -12.03157 -11.77891 -11.46472 -11.24399 -11.06813 -10.90043 -10.83908 -10.70892 -10.47794 -10.25881 -9.75990 -9.49778 -9.25999 -8.73463 -8.67653 -7.55166 -6.49278 -4.57081 0.97411 1.82058 2.67651 2.76579 3.11347 3.17952 3.20408 3.33493 3.98193 4.15286 4.34878 4.82449 4.87389 5.00041 5.07733 5.18100 5.37663 5.42437 5.52787 5.75488 5.83881 6.13432 6.16100 6.24332 6.32707 6.51353 6.56634 6.76198 6.84049 7.01786 7.11361 7.48923 7.68985 7.81254 8.22634 8.60096 9.11066 10.57839 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.025888 B = 0.004347 C = 0.004010 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.325727 B = 6439.503080 C = 6981.020063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.355 6.355 3 C 0.513 3.487 4 O -0.508 6.508 5 C -0.102 4.102 6 C -0.116 4.116 7 C -0.099 4.099 8 C -0.154 4.154 9 C 0.147 3.853 10 O -0.307 6.307 11 C 0.205 3.795 12 H 0.052 0.948 13 C -0.524 4.524 14 H 0.077 0.923 15 C 0.065 3.935 16 N -0.889 5.889 17 Si 0.918 3.082 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.272 1.272 21 C -0.037 4.037 22 Cl -0.241 7.241 23 C -0.103 4.103 24 H 0.100 0.900 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.130 0.870 28 H 0.127 0.873 29 H 0.145 0.855 30 H 0.273 0.727 31 H 0.135 0.865 32 H 0.076 0.924 33 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.653 -8.391 0.950 12.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.272 6.272 3 C 0.359 3.641 4 O -0.397 6.397 5 C -0.103 4.103 6 C -0.134 4.134 7 C -0.117 4.117 8 C -0.173 4.173 9 C 0.100 3.900 10 O -0.220 6.220 11 C 0.150 3.850 12 H 0.070 0.930 13 C -0.561 4.561 14 H 0.095 0.905 15 C -0.139 4.139 16 N -0.526 5.526 17 Si 0.744 3.256 18 H -0.197 1.197 19 H -0.208 1.208 20 H -0.197 1.197 21 C -0.099 4.099 22 Cl -0.215 7.215 23 C -0.122 4.122 24 H 0.118 0.882 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.148 0.852 28 H 0.145 0.855 29 H 0.162 0.838 30 H 0.083 0.917 31 H 0.153 0.847 32 H 0.094 0.906 33 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.783 -8.026 1.043 12.697 hybrid contribution 0.430 0.575 -0.273 0.768 sum -9.353 -7.451 0.770 11.983 Atomic orbital electron populations 1.23243 0.76418 1.03492 1.02564 1.86552 1.23186 1.32915 1.84563 1.21290 0.89249 0.81172 0.72380 1.90818 1.66874 1.36037 1.46000 1.18590 0.88138 0.94382 1.09176 1.21133 0.93845 0.97202 1.01247 1.20856 0.93941 0.97372 0.99530 1.21866 1.01947 0.92096 1.01358 1.18862 0.91432 0.86193 0.93549 1.86171 1.24863 1.24821 1.86185 1.20580 0.72950 1.00230 0.91220 0.93029 1.20983 0.91874 1.11497 1.31764 0.90479 1.24976 0.96266 0.97204 0.95419 1.69780 1.04129 1.36549 1.42149 0.86210 0.77619 0.81475 0.80305 1.19686 1.20831 1.19673 1.25803 1.05790 0.84900 0.93442 1.98644 1.92957 1.49587 1.80340 1.20336 0.92010 0.97149 1.02729 0.88160 0.91928 0.91926 0.85216 0.85541 0.83775 0.91673 0.84735 0.90570 0.84404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.34 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.63 9.81 -40.52 -0.40 -5.03 16 3 C 0.51 8.13 7.90 34.61 0.27 8.41 16 4 O -0.51 -9.13 16.13 -19.24 -0.31 -9.44 16 5 C -0.10 -1.68 5.87 -105.00 -0.62 -2.29 16 6 C -0.12 -1.69 9.61 -39.16 -0.38 -2.07 16 7 C -0.10 -1.50 10.03 -39.66 -0.40 -1.90 16 8 C -0.15 -2.81 7.03 -39.34 -0.28 -3.09 16 9 C 0.15 2.93 5.96 -39.28 -0.23 2.70 16 10 O -0.31 -6.96 9.73 -19.45 -0.19 -7.15 16 11 C 0.20 4.81 2.19 -27.88 -0.06 4.75 16 12 H 0.05 1.26 5.39 -51.93 -0.28 0.98 16 13 C -0.52 -13.30 8.89 -34.44 -0.31 -13.61 16 14 H 0.08 1.98 7.81 -52.48 -0.41 1.57 16 15 C 0.06 1.61 5.29 -17.82 -0.09 1.51 16 16 N -0.89 -22.43 11.29 55.43 0.63 -21.81 16 17 Si 0.92 19.50 29.54 -169.99 -5.02 14.48 16 18 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 19 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 20 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 21 C -0.04 -0.81 6.17 37.16 0.23 -0.58 16 22 Cl -0.24 -4.80 25.59 -51.86 -1.33 -6.13 16 23 C -0.10 -1.91 9.53 -39.01 -0.37 -2.28 16 24 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 25 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.13 1.57 7.61 -52.49 -0.40 1.17 16 28 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 29 H 0.14 2.79 5.09 -52.49 -0.27 2.52 16 30 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 31 H 0.13 3.17 5.95 -51.92 -0.31 2.87 16 32 H 0.08 1.66 8.14 -51.93 -0.42 1.23 16 33 H 0.14 2.56 7.65 -52.49 -0.40 2.16 16 LS Contribution 300.87 15.07 4.53 4.53 Total: -1.00 -26.92 300.87 -6.56 -33.49 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -3.31 Total: 4.10 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -1.16 Total: -7.05 kcal Atomic # 7 Polarization: -22.43 SS G_CDS: 0.63 Total: -21.81 kcal Atomic # 8 Polarization: -20.72 SS G_CDS: -0.90 Total: -21.62 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.48 kcal Atomic # 17 Polarization: -4.80 SS G_CDS: -1.33 Total: -6.13 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -26.92 -6.56 -33.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225680122.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.865 kcal (2) G-P(sol) polarization free energy of solvation -26.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds