Wall clock time and date at job start Tue Mar 31 2020 05:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 120.00120 * 2 1 4 4 H 1.48499 * 109.47229 * 270.00136 * 3 2 1 5 5 H 1.48498 * 109.47054 * 30.00104 * 3 2 1 6 6 H 1.48500 * 109.47279 * 149.99782 * 3 2 1 7 7 C 1.37881 * 120.00273 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00196 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99759 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47130 * 300.00417 * 9 7 2 11 11 C 1.53008 * 109.46971 * 60.00100 * 9 7 2 12 12 Cl 1.80302 * 109.46981 * 185.00122 * 11 9 7 13 13 O 1.42896 * 109.47094 * 180.02562 * 9 7 2 14 14 C 1.35981 * 116.99668 * 141.69615 * 13 9 7 15 15 C 1.38693 * 120.00419 * 5.57905 * 14 13 9 16 16 C 1.38176 * 120.05262 * 180.02562 * 15 14 13 17 17 C 1.38695 * 120.14153 * 359.92439 * 16 15 14 18 18 C 1.38969 * 119.90462 * 359.96863 * 17 16 15 19 19 C 1.38617 * 120.00025 * 185.30409 * 14 13 9 20 20 O 1.36117 * 120.78096 * 180.21051 * 18 17 16 21 21 C 1.43174 * 116.70904 * 342.70623 * 20 18 17 22 22 C 1.53464 * 108.23292 * 46.28212 * 21 20 18 23 23 O 1.36209 * 119.33301 * 179.83046 * 17 16 15 24 24 H 0.96994 * 120.00016 * 359.97438 * 1 2 3 25 25 H 1.08998 * 109.47072 * 304.99782 * 11 9 7 26 26 H 1.08994 * 109.46943 * 64.99700 * 11 9 7 27 27 H 1.07997 * 119.97614 * 0.04951 * 15 14 13 28 28 H 1.07999 * 119.93576 * 179.97438 * 16 15 14 29 29 H 1.08005 * 119.98279 * 359.97438 * 19 14 13 30 30 H 1.09004 * 109.71467 * 286.59123 * 21 20 18 31 31 H 1.09004 * 109.70915 * 165.96675 * 21 20 18 32 32 H 1.09003 * 109.70836 * 180.55055 * 22 21 20 33 33 H 1.08994 * 109.74959 * 59.94267 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3710 -2.5799 -1.2495 12 17 -0.6395 -4.0714 -1.1773 13 8 2.1797 -3.5853 -0.0005 14 6 1.8581 -4.6723 0.7505 15 6 0.6233 -4.7409 1.3782 16 6 0.2957 -5.8448 2.1420 17 6 1.1992 -6.8878 2.2821 18 6 2.4362 -6.8222 1.6522 19 6 2.7623 -5.7145 0.8840 20 8 3.3347 -7.8373 1.7741 21 6 3.1222 -8.7592 2.8488 22 6 1.6391 -9.1537 2.8568 23 8 0.8606 -7.9665 3.0417 24 1 -0.4850 0.8400 0.0004 25 1 -0.2765 -1.7043 -1.2950 26 1 1.0023 -2.6114 -2.1374 27 1 -0.0829 -3.9311 1.2697 28 1 -0.6662 -5.8961 2.6304 29 1 3.7219 -5.6631 0.3911 30 1 3.3820 -8.2862 3.7958 31 1 3.7377 -9.6463 2.6993 32 1 1.4482 -9.8494 3.6739 33 1 1.3771 -9.6209 1.9076 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226033927.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:38 Heat of formation + Delta-G solvation = -94.808978 kcal Electronic energy + Delta-G solvation = -20186.001133 eV Core-core repulsion = 16817.828349 eV Total energy + Delta-G solvation = -3368.172784 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.94285 -38.90893 -36.98585 -36.08405 -34.80985 -33.41871 -30.74017 -30.41719 -29.07255 -27.55060 -25.34059 -24.52400 -22.57617 -21.78058 -19.99201 -18.60871 -17.37680 -17.07420 -16.82507 -15.90742 -15.21800 -15.05772 -14.75491 -14.36418 -14.14313 -14.10719 -13.46099 -13.27843 -13.08019 -12.85238 -12.12609 -12.07254 -12.00415 -11.27752 -11.17499 -11.11354 -10.95310 -10.85459 -10.42073 -10.27244 -10.16880 -9.59737 -9.35946 -8.99253 -8.68221 -8.14585 -7.11815 -6.44181 -4.51900 1.71522 1.88070 3.12663 3.14660 3.21139 3.25274 3.38499 3.40250 4.07925 4.19828 4.31654 4.49850 4.81477 4.88536 4.92579 4.95814 5.24241 5.43335 5.51229 5.70659 5.82713 6.15663 6.20709 6.28915 6.35792 6.49943 6.74543 6.86544 6.96543 7.11339 7.20310 7.54023 7.70163 7.75447 8.30489 8.66650 9.16065 10.62724 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.026130 B = 0.004721 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.301950 B = 5929.707142 C = 6445.705376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.916 3.084 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.523 4.523 8 H 0.077 0.923 9 C 0.205 3.795 10 H 0.053 0.947 11 C -0.035 4.035 12 Cl -0.241 7.241 13 O -0.307 6.307 14 C 0.166 3.834 15 C -0.187 4.187 16 C -0.074 4.074 17 C -0.009 4.009 18 C 0.082 3.918 19 C -0.166 4.166 20 O -0.309 6.309 21 C 0.022 3.978 22 C 0.022 3.978 23 O -0.312 6.312 24 H 0.272 0.728 25 H 0.134 0.866 26 H 0.075 0.925 27 H 0.149 0.851 28 H 0.129 0.871 29 H 0.136 0.864 30 H 0.074 0.926 31 H 0.116 0.884 32 H 0.114 0.886 33 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 -12.626 3.967 13.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.743 3.257 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.561 4.561 8 H 0.095 0.905 9 C 0.150 3.850 10 H 0.071 0.929 11 C -0.097 4.097 12 Cl -0.215 7.215 13 O -0.220 6.220 14 C 0.119 3.881 15 C -0.206 4.206 16 C -0.093 4.093 17 C -0.053 4.053 18 C 0.037 3.963 19 C -0.185 4.185 20 O -0.224 6.224 21 C -0.053 4.053 22 C -0.054 4.054 23 O -0.227 6.227 24 H 0.082 0.918 25 H 0.152 0.848 26 H 0.094 0.906 27 H 0.166 0.834 28 H 0.147 0.853 29 H 0.153 0.847 30 H 0.092 0.908 31 H 0.134 0.866 32 H 0.132 0.868 33 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.848 -12.593 3.861 13.301 hybrid contribution 0.134 0.609 0.049 0.626 sum 1.982 -11.984 3.910 12.760 Atomic orbital electron populations 1.69789 1.05989 1.28104 1.48740 1.24977 0.95183 0.99826 0.93924 0.86178 0.79702 0.81336 0.78530 1.20152 1.20769 1.19385 1.21070 0.94409 0.87956 1.52620 0.90507 1.20578 0.87417 0.82834 0.94193 0.92910 1.25752 0.95395 0.86608 1.01951 1.98644 1.75794 1.48112 1.98935 1.86131 1.49163 1.24156 1.62563 1.18618 0.91693 0.87762 0.90060 1.21406 0.97756 1.00287 1.01142 1.20135 0.98109 0.92027 0.99050 1.18618 0.93796 0.90810 1.02066 1.18339 0.87845 0.89603 1.00520 1.19384 1.01388 0.91518 1.06243 1.86263 1.49093 1.37304 1.49709 1.23555 0.97306 0.93808 0.90676 1.23488 0.91116 0.87027 1.03757 1.86277 1.56643 1.19259 1.60557 0.91786 0.84792 0.90639 0.83368 0.85264 0.84655 0.90772 0.86621 0.86769 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.79 11.29 55.43 0.63 -22.16 16 2 C 0.06 1.61 5.29 -17.82 -0.09 1.52 16 3 Si 0.92 19.71 29.54 -169.99 -5.02 14.69 16 4 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 6 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 7 C -0.52 -13.47 8.89 -34.44 -0.31 -13.77 16 8 H 0.08 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.20 4.91 2.15 -27.88 -0.06 4.85 16 10 H 0.05 1.33 5.48 -51.93 -0.28 1.05 16 11 C -0.03 -0.78 6.17 37.16 0.23 -0.55 16 12 Cl -0.24 -4.94 25.67 -51.86 -1.33 -6.27 16 13 O -0.31 -7.10 9.69 -19.68 -0.19 -7.29 16 14 C 0.17 3.47 6.21 -39.27 -0.24 3.23 16 15 C -0.19 -3.70 7.19 -39.44 -0.28 -3.99 16 16 C -0.07 -1.33 9.96 -39.44 -0.39 -1.72 16 17 C -0.01 -0.16 6.49 -39.14 -0.25 -0.41 16 18 C 0.08 1.44 6.49 -39.15 -0.25 1.19 16 19 C -0.17 -3.17 9.90 -39.28 -0.39 -3.56 16 20 O -0.31 -4.76 10.42 -32.89 -0.34 -5.10 16 21 C 0.02 0.24 7.26 37.40 0.27 0.51 16 22 C 0.02 0.24 7.26 37.40 0.27 0.51 16 23 O -0.31 -4.74 10.42 -33.19 -0.35 -5.08 16 24 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 25 H 0.13 3.22 5.95 -51.93 -0.31 2.91 16 26 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 27 H 0.15 3.07 4.82 -52.49 -0.25 2.82 16 28 H 0.13 2.03 8.06 -52.49 -0.42 1.61 16 29 H 0.14 2.44 8.06 -52.48 -0.42 2.02 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.12 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 290.81 15.07 4.38 4.38 Total: -1.00 -27.49 290.81 -7.08 -34.57 By element: Atomic # 1 Polarization: 7.81 SS G_CDS: -3.35 Total: 4.46 kcal Atomic # 6 Polarization: -10.69 SS G_CDS: -1.51 Total: -12.19 kcal Atomic # 7 Polarization: -22.79 SS G_CDS: 0.63 Total: -22.16 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.88 Total: -17.48 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.02 Total: 14.69 kcal Atomic # 17 Polarization: -4.94 SS G_CDS: -1.33 Total: -6.27 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.49 -7.08 -34.57 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226033927.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.244 kcal (2) G-P(sol) polarization free energy of solvation -27.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds