Wall clock time and date at job start Tue Mar 31 2020 05:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00002 * 2 1 4 4 H 1.48504 * 109.47350 * 239.99824 * 3 2 1 5 5 H 1.48501 * 109.47305 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47361 * 119.99736 * 3 2 1 7 7 C 1.37880 * 119.99701 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99296 * 175.67909 * 7 2 1 9 9 C 1.50699 * 120.00342 * 355.68630 * 7 2 1 10 10 H 1.09000 * 109.46773 * 35.11597 * 9 7 2 11 11 C 1.52993 * 109.47157 * 155.11865 * 9 7 2 12 12 Cl 1.80299 * 109.47048 * 185.72017 * 11 9 7 13 13 O 1.42897 * 109.46815 * 275.11909 * 9 7 2 14 14 C 1.35529 * 117.00137 * 149.99631 * 13 9 7 15 15 N 1.32580 * 120.54103 * 0.02562 * 14 13 9 16 16 C 1.32133 * 120.80868 * 180.02562 * 15 14 13 17 17 N 1.30921 * 122.54519 * 359.97438 * 16 15 14 18 18 C 1.35203 * 121.09542 * 359.97438 * 17 16 15 19 19 C 1.40366 * 129.74832 * 179.97438 * 18 17 16 20 20 C 1.32365 * 115.78627 * 180.02562 * 19 18 17 21 21 S 1.75571 * 110.77232 * 359.97438 * 20 19 18 22 22 C 1.39805 * 117.76273 * 359.73169 * 18 17 16 23 23 H 0.97008 * 120.00137 * 185.56018 * 1 2 3 24 24 H 1.09001 * 109.47642 * 305.72326 * 11 9 7 25 25 H 1.08999 * 109.47248 * 65.72222 * 11 9 7 26 26 H 1.07991 * 118.72659 * 180.02562 * 16 15 14 27 27 H 1.08003 * 122.11544 * 0.04518 * 19 18 17 28 28 H 1.07995 * 124.61774 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0044 -1.1941 0.0005 8 1 3.0822 -1.1954 -0.0699 9 6 1.2542 -2.4973 0.0993 10 1 0.3078 -2.4130 -0.4350 11 6 2.0924 -3.6166 -0.5214 12 17 1.1291 -5.1404 -0.5556 13 8 1.0005 -2.7979 1.4730 14 6 -0.1189 -3.5096 1.7507 15 7 -0.9283 -3.8999 0.7757 16 6 -2.0213 -4.5935 1.0404 17 7 -2.3637 -4.9310 2.2582 18 6 -1.6031 -4.5809 3.3197 19 6 -1.7942 -4.8414 4.6857 20 6 -0.8659 -4.3624 5.4986 21 16 0.3755 -3.5123 4.5940 22 6 -0.4362 -3.8515 3.0726 23 1 -0.4851 -0.8362 0.0814 24 1 2.3717 -3.3404 -1.5382 25 1 2.9926 -3.7692 0.0739 26 1 -2.6563 -4.8944 0.2204 27 1 -2.6449 -5.3980 5.0505 28 1 -0.8714 -4.4787 6.5723 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226624977.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:18:25 Heat of formation + Delta-G solvation = 16.603813 kcal Electronic energy + Delta-G solvation = -17836.082449 eV Core-core repulsion = 14811.953414 eV Total energy + Delta-G solvation = -3024.129035 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 284.013 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.62818 -38.08285 -35.86885 -35.14552 -33.59596 -31.84216 -30.46857 -29.33907 -24.93445 -24.80071 -23.61042 -22.04803 -20.58066 -18.38686 -17.90534 -16.88174 -16.57525 -15.46600 -15.01359 -14.58999 -14.12315 -13.92463 -13.83354 -13.70504 -13.20757 -12.69582 -12.21039 -12.18457 -11.90848 -11.55312 -11.03663 -11.02944 -10.53691 -10.29618 -10.22648 -10.08958 -9.69081 -9.32623 -9.04416 -8.93432 -8.68071 -8.66903 -7.53666 -6.83737 -4.69314 0.71876 1.47702 1.65414 2.13496 2.53641 2.98481 3.22146 3.28218 3.46038 3.70686 4.24029 4.28308 4.29023 4.66421 4.98671 5.12471 5.25139 5.44085 5.74447 5.76517 5.80039 5.96690 6.04119 6.20613 6.61867 6.81854 7.31719 7.53429 7.93855 8.14613 8.34671 8.61827 9.11931 10.53030 Molecular weight = 284.01amu Principal moments of inertia in cm(-1) A = 0.016493 B = 0.007274 C = 0.005949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1697.316327 B = 3848.453552 C = 4705.289440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.037 3.963 3 Si 1.076 2.924 4 H -0.281 1.281 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.598 4.598 8 H 0.066 0.934 9 C 0.177 3.823 10 H 0.076 0.924 11 C -0.027 4.027 12 Cl -0.209 7.209 13 O -0.296 6.296 14 C 0.434 3.566 15 N -0.550 5.550 16 C 0.337 3.663 17 N -0.540 5.540 18 C 0.183 3.817 19 C -0.128 4.128 20 C -0.174 4.174 21 S 0.155 5.845 22 C -0.287 4.287 23 H 0.278 0.722 24 H 0.099 0.901 25 H 0.082 0.918 26 H 0.193 0.807 27 H 0.150 0.850 28 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 -7.052 6.554 9.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.174 4.174 3 Si 0.901 3.099 4 H -0.207 1.207 5 H -0.202 1.202 6 H -0.207 1.207 7 C -0.634 4.634 8 H 0.084 0.916 9 C 0.125 3.875 10 H 0.094 0.906 11 C -0.090 4.090 12 Cl -0.183 7.183 13 O -0.198 6.198 14 C 0.239 3.761 15 N -0.284 5.284 16 C 0.045 3.955 17 N -0.262 5.262 18 C 0.043 3.957 19 C -0.160 4.160 20 C -0.312 4.312 21 S 0.416 5.584 22 C -0.408 4.408 23 H 0.090 0.910 24 H 0.117 0.883 25 H 0.100 0.900 26 H 0.209 0.791 27 H 0.168 0.832 28 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 0.543 -4.918 6.322 8.029 hybrid contribution -0.646 -2.356 0.154 2.448 sum -0.103 -7.274 6.476 9.740 Atomic orbital electron populations 1.70777 1.07090 1.32010 1.40340 1.26231 0.96262 1.03386 0.91488 0.83454 0.75033 0.74261 0.77162 1.20732 1.20221 1.20691 1.21911 0.95385 0.89779 1.56276 0.91568 1.20860 0.97749 0.91694 0.77223 0.90620 1.25094 0.96152 0.83784 1.03962 1.98674 1.77137 1.43197 1.99274 1.86907 1.34362 1.62339 1.36207 1.19724 0.86573 0.83531 0.86312 1.68554 1.07273 1.18430 1.34098 1.24387 0.89905 0.88631 0.92586 1.68392 1.32843 1.26026 0.98926 1.19008 0.89272 0.93422 0.94004 1.19477 1.01987 1.04811 0.89741 1.25580 0.98863 1.02764 1.03977 1.84292 1.24666 1.55648 0.93803 1.23485 1.05068 1.13972 0.98261 0.91049 0.88276 0.89965 0.79086 0.83222 0.80816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.77 13.62 55.43 0.75 -24.01 15 2 C 0.04 0.98 5.46 -17.82 -0.10 0.88 15 3 Si 1.08 23.06 29.91 -169.99 -5.08 17.97 15 4 H -0.28 -5.67 7.11 56.52 0.40 -5.26 15 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 6 H -0.28 -5.79 7.11 56.52 0.40 -5.39 15 7 C -0.60 -15.47 8.69 -34.44 -0.30 -15.76 15 8 H 0.07 1.65 7.81 -52.48 -0.41 1.24 15 9 C 0.18 4.28 1.96 -27.89 -0.05 4.22 15 10 H 0.08 1.98 5.57 -51.93 -0.29 1.69 15 11 C -0.03 -0.55 6.31 37.15 0.23 -0.32 15 12 Cl -0.21 -4.10 25.96 -51.86 -1.35 -5.44 15 13 O -0.30 -7.20 9.76 -18.28 -0.18 -7.38 15 14 C 0.43 9.70 6.72 -16.50 -0.11 9.59 15 15 N -0.55 -11.68 6.55 -14.60 -0.10 -11.78 15 16 C 0.34 6.25 12.23 -92.61 -1.13 5.12 15 17 N -0.54 -10.07 10.50 -12.93 -0.14 -10.20 15 18 C 0.18 3.35 7.02 -84.99 -0.60 2.75 15 19 C -0.13 -1.83 10.16 -40.71 -0.41 -2.25 15 20 C -0.17 -2.18 11.09 28.81 0.32 -1.86 15 21 S 0.16 2.50 23.29 -107.50 -2.50 0.00 15 22 C -0.29 -5.72 6.50 -38.27 -0.25 -5.97 15 23 H 0.28 8.07 6.67 -40.82 -0.27 7.80 15 24 H 0.10 1.89 8.14 -51.93 -0.42 1.47 15 25 H 0.08 1.61 8.14 -51.93 -0.42 1.18 15 26 H 0.19 2.83 8.06 -52.49 -0.42 2.41 15 27 H 0.15 1.75 8.06 -52.48 -0.42 1.33 15 28 H 0.17 1.45 8.06 -52.49 -0.42 1.03 15 LS Contribution 277.55 15.07 4.18 4.18 Total: -1.00 -29.66 277.55 -8.69 -38.35 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -1.88 Total: 1.90 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -2.40 Total: -3.59 kcal Atomic # 7 Polarization: -46.51 SS G_CDS: 0.52 Total: -45.99 kcal Atomic # 8 Polarization: -7.20 SS G_CDS: -0.18 Total: -7.38 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.08 Total: 17.97 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -2.50 Total: 0.00 kcal Atomic # 17 Polarization: -4.10 SS G_CDS: -1.35 Total: -5.44 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.66 -8.69 -38.35 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226624977.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.950 kcal (2) G-P(sol) polarization free energy of solvation -29.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds