Wall clock time and date at job start Tue Mar 31 2020 06:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21343 * 119.99409 * 2 1 4 4 C 1.46418 * 120.00433 * 179.97438 * 2 1 3 5 5 C 1.40610 * 120.26804 * 274.58370 * 4 2 1 6 6 O 1.35605 * 120.14057 * 0.02562 * 5 4 2 7 7 C 1.38472 * 119.71729 * 180.29651 * 5 4 2 8 8 C 1.38296 * 120.26946 * 359.70683 * 7 5 4 9 9 C 1.38254 * 120.56149 * 0.02562 * 8 7 5 10 10 C 1.38506 * 120.27161 * 0.02562 * 9 8 7 11 11 O 1.35611 * 120.14066 * 179.97438 * 10 9 8 12 12 C 1.42894 * 117.00104 * 5.65401 * 11 10 9 13 13 H 1.09011 * 109.46974 * 20.73721 * 12 11 10 14 14 C 1.50701 * 109.47361 * 140.73554 * 12 11 10 15 15 H 1.08003 * 119.99732 * 5.70771 * 14 12 11 16 16 C 1.37878 * 119.99941 * 185.71390 * 14 12 11 17 17 N 1.31510 * 119.99446 * 196.81003 * 16 14 12 18 18 Si 1.86795 * 120.00053 * 16.81578 * 16 14 12 19 19 H 1.48504 * 109.46935 * 180.02562 * 18 16 14 20 20 H 1.48502 * 109.46939 * 299.99811 * 18 16 14 21 21 H 1.48501 * 109.47519 * 59.99850 * 18 16 14 22 22 C 1.52995 * 109.47124 * 260.73626 * 12 11 10 23 23 Cl 1.80299 * 109.47053 * 65.32293 * 22 12 11 24 24 H 1.08994 * 109.46999 * 274.97308 * 1 2 3 25 25 H 1.08994 * 109.47577 * 34.97954 * 1 2 3 26 26 H 1.09002 * 109.46746 * 154.97512 * 1 2 3 27 27 H 0.96700 * 113.99727 * 270.29404 * 6 5 4 28 28 H 1.07993 * 119.85976 * 179.68011 * 7 5 4 29 29 H 1.08002 * 119.71574 * 180.02562 * 8 7 5 30 30 H 1.07993 * 119.86281 * 179.97438 * 9 8 7 31 31 H 0.96997 * 120.00596 * 354.93174 * 17 16 14 32 32 H 1.08998 * 109.47337 * 185.32118 * 22 12 11 33 33 H 1.09000 * 109.47332 * 305.32055 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1136 1.0509 0.0000 4 6 2.2392 -1.2680 0.0006 5 6 2.5096 -1.9297 1.2114 6 8 2.0927 -1.3967 2.3865 7 6 3.2083 -3.1252 1.1992 8 6 3.6343 -3.6714 0.0022 9 6 3.3699 -3.0332 -1.1954 10 6 2.6737 -1.8359 -1.2096 11 8 2.4162 -1.2119 -2.3858 12 6 2.7817 -1.9043 -3.5812 13 1 2.8758 -2.9695 -3.3697 14 6 1.7198 -1.6922 -4.6292 15 1 0.8998 -1.0158 -4.4380 16 6 1.7950 -2.3617 -5.8322 17 7 1.0846 -1.9499 -6.8594 18 14 2.9059 -3.8538 -6.0028 19 1 2.8082 -4.3881 -7.3849 20 1 4.3101 -3.4599 -5.7230 21 1 2.4830 -4.8990 -5.0364 22 6 4.1189 -1.3660 -4.0938 23 17 5.4192 -1.7589 -2.9082 24 1 -0.3633 0.0891 1.0237 25 1 -0.3634 0.8420 -0.5891 26 1 -0.3633 -0.9312 -0.4347 27 1 2.7323 -0.7979 2.7957 28 1 3.4217 -3.6327 2.1282 29 1 4.1783 -4.6044 0.0030 30 1 3.7082 -3.4696 -2.1234 31 1 0.4530 -1.2216 -6.7516 32 1 4.3517 -1.8260 -5.0541 33 1 4.0527 -0.2848 -4.2155 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226777110.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:13 Heat of formation + Delta-G solvation = -101.806193 kcal Electronic energy + Delta-G solvation = -20541.256823 eV Core-core repulsion = 17172.780617 eV Total energy + Delta-G solvation = -3368.476206 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.36285 -38.59682 -38.09057 -35.95046 -35.22294 -33.51317 -31.53607 -30.32371 -29.09853 -28.87382 -25.00387 -23.58121 -22.91684 -20.68631 -19.99895 -18.26864 -18.04920 -16.82244 -16.25114 -16.12074 -15.39465 -14.76369 -14.68132 -14.32323 -14.28992 -13.95836 -13.59395 -13.42454 -12.87210 -12.63250 -12.24482 -12.02964 -11.90755 -11.88472 -11.55629 -11.09910 -10.90607 -10.87436 -10.65153 -10.21819 -9.94448 -9.65106 -9.43383 -9.24802 -8.66436 -8.57558 -7.79997 -6.92408 -4.58020 1.23549 1.59763 2.16785 2.88806 3.07341 3.15977 3.29295 3.61170 3.78219 4.08943 4.30929 4.42559 4.80512 5.10219 5.23840 5.32653 5.38753 5.59850 5.62747 5.68381 5.70090 5.81752 5.89529 6.00708 6.18163 6.35275 6.41685 6.57492 6.61315 6.75147 7.26841 7.59233 7.70629 7.87122 8.03218 8.54851 9.11760 10.48590 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.018516 B = 0.006727 C = 0.005943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1511.859987 B = 4161.621167 C = 4710.101183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.431 3.569 3 O -0.457 6.457 4 C -0.232 4.232 5 C 0.165 3.835 6 O -0.496 6.496 7 C -0.196 4.196 8 C -0.053 4.053 9 C -0.208 4.208 10 C 0.201 3.799 11 O -0.293 6.293 12 C 0.188 3.812 13 H 0.044 0.956 14 C -0.611 4.611 15 H 0.076 0.924 16 C 0.041 3.959 17 N -0.876 5.876 18 Si 1.026 2.974 19 H -0.272 1.272 20 H -0.268 1.268 21 H -0.272 1.272 22 C -0.052 4.052 23 Cl -0.227 7.227 24 H 0.095 0.905 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.392 0.608 28 H 0.128 0.872 29 H 0.128 0.872 30 H 0.142 0.858 31 H 0.277 0.723 32 H 0.106 0.894 33 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.743 -2.841 12.622 13.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.306 3.694 3 O -0.331 6.331 4 C -0.235 4.235 5 C 0.120 3.880 6 O -0.306 6.306 7 C -0.215 4.215 8 C -0.071 4.071 9 C -0.226 4.226 10 C 0.152 3.848 11 O -0.204 6.204 12 C 0.132 3.868 13 H 0.062 0.938 14 C -0.648 4.648 15 H 0.094 0.906 16 C -0.168 4.168 17 N -0.507 5.507 18 Si 0.852 3.148 19 H -0.197 1.197 20 H -0.195 1.195 21 H -0.198 1.198 22 C -0.114 4.114 23 Cl -0.201 7.201 24 H 0.113 0.887 25 H 0.105 0.895 26 H 0.104 0.896 27 H 0.248 0.752 28 H 0.146 0.854 29 H 0.146 0.854 30 H 0.159 0.841 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.092 -3.536 11.411 12.628 hybrid contribution -0.026 1.164 1.052 1.569 sum 4.066 -2.372 12.463 13.322 Atomic orbital electron populations 1.22185 0.93639 1.05027 1.04079 1.21995 0.91609 0.87025 0.68734 1.90537 1.72465 1.34388 1.35708 1.19925 1.10710 1.00698 0.92127 1.17948 0.94645 0.92166 0.83256 1.84686 1.46406 1.65353 1.34194 1.21033 1.03717 0.97846 0.98886 1.20850 0.96435 0.98585 0.91225 1.21467 1.04235 0.96827 1.00077 1.18844 0.90016 0.90078 0.85842 1.86129 1.76766 1.45358 1.12162 1.20888 0.92207 0.92555 0.81168 0.93830 1.21918 1.10347 1.31741 1.00761 0.90568 1.25769 0.99843 1.00285 0.90864 1.70838 1.22918 1.27740 1.29253 0.84287 0.76135 0.76411 0.77940 1.19655 1.19462 1.19764 1.26339 0.86671 1.04722 0.93711 1.98665 1.59632 1.95544 1.66266 0.88668 0.89518 0.89647 0.75162 0.85382 0.85449 0.84058 0.91265 0.87576 0.88695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.78 10.25 36.01 0.37 -2.41 16 2 C 0.43 7.74 5.74 -31.02 -0.18 7.56 16 3 O -0.46 -9.39 17.86 5.50 0.10 -9.29 16 4 C -0.23 -4.15 5.53 -104.83 -0.58 -4.73 16 5 C 0.16 2.47 6.72 -38.60 -0.26 2.21 16 6 O -0.50 -6.24 12.96 -18.51 -0.24 -6.47 16 7 C -0.20 -2.66 9.96 -39.47 -0.39 -3.05 16 8 C -0.05 -0.75 10.02 -39.55 -0.40 -1.15 16 9 C -0.21 -3.62 7.27 -39.48 -0.29 -3.91 16 10 C 0.20 3.94 6.25 -38.61 -0.24 3.69 16 11 O -0.29 -6.57 9.14 -18.53 -0.17 -6.74 16 12 C 0.19 4.22 1.72 -27.88 -0.05 4.17 16 13 H 0.04 0.96 4.09 -51.92 -0.21 0.74 16 14 C -0.61 -15.88 9.15 -34.44 -0.32 -16.19 16 15 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 16 C 0.04 1.08 5.31 -17.82 -0.09 0.98 16 17 N -0.88 -24.43 13.70 55.43 0.76 -23.67 16 18 Si 1.03 22.02 26.29 -169.99 -4.47 17.55 16 19 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 20 H -0.27 -5.22 5.70 56.52 0.32 -4.89 16 21 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 22 C -0.05 -1.07 6.01 37.16 0.22 -0.85 16 23 Cl -0.23 -4.24 25.84 -51.86 -1.34 -5.58 16 24 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 25 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 26 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 27 H 0.39 3.31 9.06 45.56 0.41 3.73 16 28 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 29 H 0.13 1.43 8.06 -52.49 -0.42 1.00 16 30 H 0.14 2.51 4.85 -52.49 -0.25 2.26 16 31 H 0.28 7.71 8.73 -40.82 -0.36 7.35 16 32 H 0.11 2.17 4.80 -51.93 -0.25 1.92 16 33 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 LS Contribution 297.86 15.07 4.49 4.49 Total: -1.00 -29.70 297.86 -5.56 -35.27 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -2.49 Total: 8.10 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -2.20 Total: -13.66 kcal Atomic # 7 Polarization: -24.43 SS G_CDS: 0.76 Total: -23.67 kcal Atomic # 8 Polarization: -22.19 SS G_CDS: -0.31 Total: -22.50 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.47 Total: 17.55 kcal Atomic # 17 Polarization: -4.24 SS G_CDS: -1.34 Total: -5.58 kcal Total LS contribution 4.49 Total: 4.49 kcal Total: -29.70 -5.56 -35.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226777110.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.539 kcal (2) G-P(sol) polarization free energy of solvation -29.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds