Wall clock time and date at job start Tue Mar 31 2020 06:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34746 * 116.99659 * 2 1 4 4 O 1.21504 * 120.00635 * 359.97438 * 3 2 1 5 5 C 1.47406 * 119.99496 * 179.97438 * 3 2 1 6 6 C 1.39768 * 120.20103 * 0.02562 * 5 3 2 7 7 C 1.37762 * 119.90516 * 179.72098 * 6 5 3 8 8 C 1.38569 * 120.30511 * 0.02562 * 7 6 5 9 9 C 1.38053 * 120.40342 * 359.97438 * 8 7 6 10 10 C 1.38700 * 120.08906 * 359.97438 * 9 8 7 11 11 O 1.35639 * 120.15201 * 180.02562 * 10 9 8 12 12 C 1.42897 * 117.00074 * 356.74326 * 11 10 9 13 13 H 1.09005 * 109.47213 * 26.85461 * 12 11 10 14 14 C 1.50700 * 109.47146 * 146.85266 * 12 11 10 15 15 H 1.07992 * 120.00334 * 0.02562 * 14 12 11 16 16 C 1.37879 * 120.00100 * 180.02562 * 14 12 11 17 17 N 1.31516 * 119.99792 * 0.02562 * 16 14 12 18 18 Si 1.86795 * 120.00441 * 180.02562 * 16 14 12 19 19 H 1.48505 * 109.47113 * 359.97438 * 18 16 14 20 20 H 1.48496 * 109.47379 * 119.99515 * 18 16 14 21 21 H 1.48498 * 109.47359 * 239.99815 * 18 16 14 22 22 C 1.53001 * 109.47199 * 266.85099 * 12 11 10 23 23 Cl 1.80300 * 109.46829 * 64.99919 * 22 12 11 24 24 H 1.09006 * 109.47104 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47183 * 299.99935 * 1 2 3 26 26 H 1.08994 * 109.47655 * 59.99793 * 1 2 3 27 27 H 1.08002 * 120.04462 * 359.74026 * 6 5 3 28 28 H 1.07996 * 119.84648 * 179.97438 * 7 6 5 29 29 H 1.07999 * 119.79463 * 179.97438 * 8 7 6 30 30 H 1.08004 * 119.95166 * 180.02562 * 9 8 7 31 31 H 0.97005 * 120.00142 * 180.02562 * 17 16 14 32 32 H 1.09000 * 109.47179 * 184.99697 * 22 12 11 33 33 H 1.08995 * 109.46962 * 305.00436 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2006 0.0000 4 8 1.4020 2.2197 -0.0005 5 6 3.5357 1.2777 0.0006 6 6 4.3010 0.1082 0.0006 7 6 5.6763 0.1874 -0.0047 8 6 6.3057 1.4219 -0.0095 9 6 5.5622 2.5851 -0.0096 10 6 4.1765 2.5247 -0.0053 11 8 3.4447 3.6668 -0.0059 12 6 4.1652 4.8990 0.0614 13 1 5.1600 4.7618 -0.3627 14 6 3.4275 5.9556 -0.7199 15 1 2.5009 5.7108 -1.2176 16 6 3.9355 7.2349 -0.7993 17 7 5.0642 7.5329 -0.1935 18 14 3.0208 8.5448 -1.7670 19 1 1.7871 7.9587 -2.3498 20 1 2.6575 9.6652 -0.8626 21 1 3.8907 9.0519 -2.8585 22 6 4.2894 5.3381 1.5217 23 17 5.2974 4.1462 2.4240 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 3.8148 -0.8562 0.0044 28 1 6.2668 -0.7169 -0.0043 29 1 7.3844 1.4743 -0.0132 30 1 6.0602 3.5434 -0.0137 31 1 5.4215 8.4331 -0.2490 32 1 4.7602 6.3202 1.5671 33 1 3.2978 5.3893 1.9712 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001227594736.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:07:04 Heat of formation + Delta-G solvation = -106.256999 kcal Electronic energy + Delta-G solvation = -20402.268866 eV Core-core repulsion = 17033.599658 eV Total energy + Delta-G solvation = -3368.669207 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 284.065 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.24359 -39.06224 -36.94127 -35.89477 -34.87027 -33.46507 -31.24935 -29.99692 -28.88195 -27.43157 -25.35075 -23.66507 -22.86494 -20.58439 -20.45793 -18.01074 -16.98180 -16.84544 -16.28321 -15.98741 -15.21380 -14.69338 -14.51001 -14.45031 -14.12097 -13.36268 -13.11209 -12.98296 -12.75609 -12.15874 -12.05638 -11.94102 -11.68823 -11.40154 -11.15754 -10.99314 -10.92085 -10.74089 -10.48319 -10.29271 -9.90390 -9.69931 -9.45801 -9.19384 -8.69598 -8.64023 -7.53709 -6.44854 -4.51143 1.17963 1.88538 3.03799 3.04570 3.11531 3.21369 3.27909 3.36164 3.97398 4.21294 4.33549 4.91801 5.08635 5.18289 5.26392 5.33667 5.38488 5.54938 5.64352 5.71307 5.94475 6.17037 6.22257 6.23936 6.49562 6.57872 6.70369 6.80246 6.87278 7.07148 7.16631 7.55406 7.73349 8.24261 8.27716 8.67402 9.16323 10.62608 Molecular weight = 284.06amu Principal moments of inertia in cm(-1) A = 0.015945 B = 0.006490 C = 0.005293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.587861 B = 4313.007040 C = 5289.214655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.366 6.366 3 C 0.504 3.496 4 O -0.481 6.481 5 C -0.186 4.186 6 C -0.034 4.034 7 C -0.192 4.192 8 C -0.049 4.049 9 C -0.207 4.207 10 C 0.222 3.778 11 O -0.275 6.275 12 C 0.199 3.801 13 H 0.053 0.947 14 C -0.517 4.517 15 H 0.079 0.921 16 C 0.063 3.937 17 N -0.891 5.891 18 Si 0.916 3.084 19 H -0.268 1.268 20 H -0.279 1.279 21 H -0.279 1.279 22 C -0.035 4.035 23 Cl -0.242 7.242 24 H 0.096 0.904 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.133 0.867 28 H 0.122 0.878 29 H 0.123 0.877 30 H 0.147 0.853 31 H 0.271 0.729 32 H 0.135 0.865 33 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.647 -11.942 0.938 11.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.284 6.284 3 C 0.349 3.651 4 O -0.367 6.367 5 C -0.188 4.188 6 C -0.052 4.052 7 C -0.210 4.210 8 C -0.067 4.067 9 C -0.225 4.225 10 C 0.171 3.829 11 O -0.185 6.185 12 C 0.144 3.856 13 H 0.071 0.929 14 C -0.555 4.555 15 H 0.097 0.903 16 C -0.140 4.140 17 N -0.528 5.528 18 Si 0.743 3.257 19 H -0.192 1.192 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.097 4.097 23 Cl -0.216 7.216 24 H 0.114 0.886 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.151 0.849 28 H 0.140 0.860 29 H 0.141 0.859 30 H 0.164 0.836 31 H 0.081 0.919 32 H 0.153 0.847 33 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -0.922 -11.486 1.027 11.568 hybrid contribution -0.288 0.864 -0.263 0.947 sum -1.210 -10.622 0.764 10.718 Atomic orbital electron populations 1.23149 0.76938 1.02928 1.02495 1.86517 1.22808 1.33590 1.85489 1.21010 0.89000 0.81261 0.73859 1.90928 1.66221 1.35346 1.44210 1.18333 0.89020 0.92295 1.19166 1.21098 0.93668 0.96626 0.93789 1.20826 0.94166 0.97612 1.08396 1.21114 0.99717 0.91898 0.93969 1.21520 0.92737 1.00644 1.07635 1.19156 0.90070 0.86796 0.86889 1.86375 1.35946 1.12760 1.83414 1.20705 0.94493 0.78995 0.91429 0.92947 1.21069 1.09779 0.93217 1.31385 0.90278 1.24976 0.94989 0.98481 0.95510 1.69800 1.19005 1.21440 1.42566 0.86114 0.79801 0.80351 0.79450 1.19212 1.20489 1.20492 1.25787 0.95488 0.95141 0.93328 1.98640 1.75904 1.66623 1.80433 0.88596 0.92146 0.92109 0.84904 0.85988 0.85916 0.83565 0.91857 0.84682 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.47 10.57 101.05 1.07 1.54 16 2 O -0.37 -5.73 9.82 -40.62 -0.40 -6.13 16 3 C 0.50 9.77 7.89 34.46 0.27 10.04 16 4 O -0.48 -10.95 14.95 -26.59 -0.40 -11.35 16 5 C -0.19 -3.52 5.89 -104.86 -0.62 -4.14 16 6 C -0.03 -0.51 9.61 -39.18 -0.38 -0.88 16 7 C -0.19 -2.65 10.02 -39.63 -0.40 -3.04 16 8 C -0.05 -0.74 10.03 -39.53 -0.40 -1.14 16 9 C -0.21 -3.89 7.04 -39.48 -0.28 -4.17 16 10 C 0.22 4.66 5.98 -38.68 -0.23 4.42 16 11 O -0.27 -6.69 7.80 -40.50 -0.32 -7.00 16 12 C 0.20 4.89 2.19 -27.88 -0.06 4.83 16 13 H 0.05 1.32 5.39 -51.93 -0.28 1.04 16 14 C -0.52 -13.77 8.89 -34.44 -0.31 -14.08 16 15 H 0.08 2.19 7.81 -52.49 -0.41 1.78 16 16 C 0.06 1.63 5.29 -17.82 -0.09 1.53 16 17 N -0.89 -23.09 11.30 55.43 0.63 -22.46 16 18 Si 0.92 20.23 29.54 -169.99 -5.02 15.21 16 19 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 20 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 22 C -0.03 -0.81 6.17 37.16 0.23 -0.58 16 23 Cl -0.24 -4.98 25.61 -51.86 -1.33 -6.31 16 24 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.13 1.66 7.61 -52.49 -0.40 1.26 16 28 H 0.12 1.29 8.06 -52.49 -0.42 0.86 16 29 H 0.12 1.52 8.06 -52.49 -0.42 1.10 16 30 H 0.15 2.92 5.10 -52.48 -0.27 2.65 16 31 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 32 H 0.14 3.30 5.96 -51.93 -0.31 2.99 16 33 H 0.08 1.78 8.14 -51.93 -0.42 1.35 16 LS Contribution 298.76 15.07 4.50 4.50 Total: -1.00 -28.90 298.76 -6.86 -35.76 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -3.34 Total: 3.43 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -1.19 Total: -5.66 kcal Atomic # 7 Polarization: -23.09 SS G_CDS: 0.63 Total: -22.46 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -1.11 Total: -24.48 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Atomic # 17 Polarization: -4.98 SS G_CDS: -1.33 Total: -6.31 kcal Total LS contribution 4.50 Total: 4.50 kcal Total: -28.90 -6.86 -35.76 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001227594736.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.492 kcal (2) G-P(sol) polarization free energy of solvation -28.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds