Wall clock time and date at job start Tue Mar 31 2020 05:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00004 * 2 1 4 4 H 1.48503 * 109.46970 * 270.00108 * 3 2 1 5 5 H 1.48495 * 109.47030 * 29.99840 * 3 2 1 6 6 H 1.48499 * 109.47334 * 150.00416 * 3 2 1 7 7 C 1.37877 * 120.00421 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00794 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99737 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47345 * 300.00290 * 9 7 2 11 11 C 1.53004 * 109.47018 * 60.00029 * 9 7 2 12 12 Cl 1.80293 * 109.47197 * 185.00057 * 11 9 7 13 13 O 1.42900 * 109.47270 * 179.97438 * 9 7 2 14 14 C 1.35894 * 116.99728 * 147.35331 * 13 9 7 15 15 C 1.38140 * 119.75288 * 356.46371 * 14 13 9 16 16 C 1.39173 * 119.73485 * 180.02562 * 15 14 13 17 17 N 1.37157 * 133.74132 * 179.97438 * 16 15 14 18 18 H 0.97000 * 125.95517 * 359.96119 * 17 16 15 19 19 N 1.40021 * 108.09662 * 180.02562 * 17 16 15 20 20 C 1.30119 * 109.78180 * 0.02562 * 19 17 16 21 21 C 1.40788 * 119.66631 * 0.29074 * 16 15 14 22 22 C 1.40272 * 119.62310 * 359.42564 * 21 16 15 23 23 F 1.35101 * 120.06520 * 180.26707 * 22 21 16 24 24 C 1.36559 * 119.87094 * 0.57466 * 22 21 16 25 25 H 0.96995 * 120.00004 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46901 * 305.00119 * 11 9 7 27 27 H 1.09002 * 109.47315 * 64.99567 * 11 9 7 28 28 H 1.08004 * 120.13365 * 0.02562 * 15 14 13 29 29 H 1.07994 * 125.66354 * 180.02562 * 20 19 17 30 30 H 1.07991 * 119.70196 * 179.68776 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0017 10 1 0.6247 -2.5563 0.8919 11 6 0.3709 -2.5810 -1.2472 12 17 -0.6395 -4.0724 -1.1736 13 8 2.1797 -3.5853 0.0015 14 6 1.8061 -4.7164 0.6555 15 6 0.6074 -4.7476 1.3413 16 6 0.2254 -5.9060 2.0114 17 7 -0.8695 -6.2499 2.7625 18 1 -1.6255 -5.6762 2.9630 19 7 -0.7052 -7.5728 3.1907 20 6 0.4220 -8.0439 2.7428 21 6 1.0678 -7.0339 1.9890 22 6 2.2777 -6.9817 1.2812 23 9 3.0903 -8.0606 1.2492 24 6 2.6356 -5.8362 0.6296 25 1 -0.4850 0.8400 0.0004 26 1 -0.2765 -1.7054 -1.2934 27 1 1.0023 -2.6133 -2.1352 28 1 -0.0308 -3.8765 1.3575 29 1 0.8033 -9.0387 2.9195 30 1 3.5701 -5.7974 0.0897 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230932160.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:40 Heat of formation + Delta-G solvation = -8.719032 kcal Electronic energy + Delta-G solvation = -19814.252138 eV Core-core repulsion = 16358.644941 eV Total energy + Delta-G solvation = -3455.607198 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.047 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -48.75720 -41.16186 -38.94833 -35.73191 -34.84705 -33.47516 -32.02166 -30.05051 -28.99978 -28.41338 -25.44412 -23.36317 -22.29012 -21.52898 -20.73061 -18.55098 -17.30791 -16.66559 -16.34042 -15.77016 -15.61801 -15.18958 -14.90828 -14.50629 -14.22086 -14.16557 -13.75330 -13.19822 -12.77953 -12.16720 -12.11967 -11.95482 -11.56386 -11.21612 -11.18969 -10.94399 -10.75648 -10.59823 -10.35853 -10.06104 -9.72466 -9.49108 -9.21721 -8.78434 -8.00074 -7.42403 -6.54089 -4.62152 1.09805 1.72512 2.69672 2.85656 3.06511 3.15333 3.18701 3.29610 3.78253 3.93934 4.15513 4.52671 4.82201 4.83661 4.96799 5.13525 5.46155 5.58789 5.76102 6.05450 6.10874 6.13451 6.28212 6.43802 6.52326 6.77634 6.93531 7.04807 7.39416 7.45323 7.62755 7.72696 8.11978 8.53483 9.06164 10.53085 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.022885 B = 0.005255 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.189822 B = 5327.432412 C = 5629.107329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.065 3.935 3 Si 0.917 3.083 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.269 1.269 7 C -0.524 4.524 8 H 0.078 0.922 9 C 0.204 3.796 10 H 0.055 0.945 11 C -0.038 4.038 12 Cl -0.239 7.239 13 O -0.299 6.299 14 C 0.230 3.770 15 C -0.243 4.243 16 C 0.197 3.803 17 N -0.508 5.508 18 H 0.442 0.558 19 N -0.268 5.268 20 C 0.092 3.908 21 C -0.261 4.261 22 C 0.200 3.800 23 F -0.134 7.134 24 C -0.218 4.218 25 H 0.273 0.727 26 H 0.135 0.865 27 H 0.077 0.923 28 H 0.148 0.852 29 H 0.190 0.810 30 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.589 -8.624 1.960 8.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.138 4.138 3 Si 0.744 3.256 4 H -0.201 1.201 5 H -0.207 1.207 6 H -0.193 1.193 7 C -0.561 4.561 8 H 0.097 0.903 9 C 0.149 3.851 10 H 0.072 0.928 11 C -0.100 4.100 12 Cl -0.214 7.214 13 O -0.210 6.210 14 C 0.178 3.822 15 C -0.266 4.266 16 C 0.079 3.921 17 N -0.223 5.223 18 H 0.287 0.713 19 N -0.083 5.083 20 C -0.105 4.105 21 C -0.269 4.269 22 C 0.178 3.822 23 F -0.113 7.113 24 C -0.239 4.239 25 H 0.083 0.917 26 H 0.153 0.847 27 H 0.095 0.905 28 H 0.166 0.834 29 H 0.206 0.794 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.507 -8.828 2.549 9.203 hybrid contribution 0.497 1.203 -0.445 1.376 sum -0.011 -7.625 2.103 7.910 Atomic orbital electron populations 1.69779 1.06037 1.28263 1.48481 1.24975 0.95197 0.99901 0.93776 0.86152 0.79700 0.81157 0.78620 1.20068 1.20735 1.19304 1.21006 0.94457 0.87680 1.52979 0.90340 1.20663 0.87448 0.82683 0.94296 0.92765 1.25781 0.95483 0.86872 1.01883 1.98651 1.75825 1.47869 1.99009 1.86183 1.46202 1.21007 1.67605 1.18319 0.89980 0.86744 0.87178 1.20270 1.00578 0.98464 1.07294 1.18205 0.87501 0.94098 0.92319 1.45978 1.19381 1.10908 1.46005 0.71318 1.76588 1.19097 0.92082 1.20536 1.23691 0.91626 0.99371 0.95764 1.18611 0.98858 0.96929 1.12528 1.16232 0.86761 0.83117 0.96134 1.91472 1.71682 1.53423 1.94697 1.19777 1.03770 0.91387 1.08966 0.91687 0.84717 0.90486 0.83419 0.79357 0.83861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -21.99 11.29 55.43 0.63 -21.36 16 2 C 0.07 1.57 5.29 -17.82 -0.09 1.48 16 3 Si 0.92 19.05 29.54 -169.99 -5.02 14.03 16 4 H -0.28 -5.66 7.11 56.52 0.40 -5.26 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.52 -12.87 8.89 -34.44 -0.31 -13.18 16 8 H 0.08 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.20 4.61 2.19 -27.88 -0.06 4.55 16 10 H 0.05 1.29 5.39 -51.93 -0.28 1.01 16 11 C -0.04 -0.80 6.17 37.16 0.23 -0.58 16 12 Cl -0.24 -4.68 25.54 -51.86 -1.32 -6.00 16 13 O -0.30 -6.41 9.73 -19.41 -0.19 -6.59 16 14 C 0.23 4.38 5.97 -39.19 -0.23 4.15 16 15 C -0.24 -4.47 7.02 -39.27 -0.28 -4.74 16 16 C 0.20 3.33 7.33 -84.17 -0.62 2.72 16 17 N -0.51 -7.66 7.44 32.35 0.24 -7.42 16 18 H 0.44 5.54 8.96 -182.66 -1.64 3.91 16 19 N -0.27 -4.04 12.56 30.87 0.39 -3.65 16 20 C 0.09 1.28 12.05 -16.99 -0.20 1.08 16 21 C -0.26 -4.21 6.16 -106.88 -0.66 -4.86 16 22 C 0.20 3.18 7.30 -39.42 -0.29 2.89 16 23 F -0.13 -1.96 17.27 2.25 0.04 -1.92 16 24 C -0.22 -3.69 9.87 -39.76 -0.39 -4.08 16 25 H 0.27 6.44 8.31 -40.82 -0.34 6.10 16 26 H 0.14 3.10 5.95 -51.93 -0.31 2.80 16 27 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 28 H 0.15 2.86 5.05 -52.48 -0.27 2.60 16 29 H 0.19 1.92 8.06 -52.49 -0.42 1.50 16 30 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 278.66 15.07 4.20 4.20 Total: -1.00 -25.52 278.66 -7.25 -32.77 By element: Atomic # 1 Polarization: 9.82 SS G_CDS: -3.30 Total: 6.52 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: -2.90 Total: -10.58 kcal Atomic # 7 Polarization: -33.69 SS G_CDS: 1.25 Total: -32.43 kcal Atomic # 8 Polarization: -6.41 SS G_CDS: -0.19 Total: -6.59 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.04 Total: -1.92 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Atomic # 17 Polarization: -4.68 SS G_CDS: -1.32 Total: -6.00 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -25.52 -7.25 -32.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230932160.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.053 kcal (2) G-P(sol) polarization free energy of solvation -25.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds