Wall clock time and date at job start Tue Mar 31 2020 05:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86804 * 120.00004 * 2 1 4 4 H 1.48503 * 109.46970 * 270.00108 * 3 2 1 5 5 H 1.48495 * 109.47030 * 29.99840 * 3 2 1 6 6 H 1.48499 * 109.47334 * 150.00416 * 3 2 1 7 7 C 1.37877 * 120.00421 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00794 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99737 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.47345 * 300.00290 * 9 7 2 11 11 C 1.53004 * 109.47018 * 60.00029 * 9 7 2 12 12 Cl 1.80293 * 109.47197 * 185.00057 * 11 9 7 13 13 O 1.42900 * 109.47270 * 179.97438 * 9 7 2 14 14 C 1.35894 * 116.99728 * 147.35331 * 13 9 7 15 15 C 1.38140 * 119.75288 * 356.46371 * 14 13 9 16 16 C 1.39173 * 119.73485 * 180.02562 * 15 14 13 17 17 N 1.37157 * 133.74132 * 179.97438 * 16 15 14 18 18 H 0.97000 * 125.95517 * 359.96119 * 17 16 15 19 19 N 1.40021 * 108.09662 * 180.02562 * 17 16 15 20 20 C 1.30119 * 109.78180 * 0.02562 * 19 17 16 21 21 C 1.40788 * 119.66631 * 0.29074 * 16 15 14 22 22 C 1.40272 * 119.62310 * 359.42564 * 21 16 15 23 23 F 1.35101 * 120.06520 * 180.26707 * 22 21 16 24 24 C 1.36559 * 119.87094 * 0.57466 * 22 21 16 25 25 H 0.96995 * 120.00004 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46901 * 305.00119 * 11 9 7 27 27 H 1.09002 * 109.47315 * 64.99567 * 11 9 7 28 28 H 1.08004 * 120.13365 * 0.02562 * 15 14 13 29 29 H 1.07994 * 125.66354 * 180.02562 * 20 19 17 30 30 H 1.07991 * 119.70196 * 179.68776 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2511 -2.4992 0.0017 10 1 0.6247 -2.5563 0.8919 11 6 0.3709 -2.5810 -1.2472 12 17 -0.6395 -4.0724 -1.1736 13 8 2.1797 -3.5853 0.0015 14 6 1.8061 -4.7164 0.6555 15 6 0.6074 -4.7476 1.3413 16 6 0.2254 -5.9060 2.0114 17 7 -0.8695 -6.2499 2.7625 18 1 -1.6255 -5.6762 2.9630 19 7 -0.7052 -7.5728 3.1907 20 6 0.4220 -8.0439 2.7428 21 6 1.0678 -7.0339 1.9890 22 6 2.2777 -6.9817 1.2812 23 9 3.0903 -8.0606 1.2492 24 6 2.6356 -5.8362 0.6296 25 1 -0.4850 0.8400 0.0004 26 1 -0.2765 -1.7054 -1.2934 27 1 1.0023 -2.6133 -2.1352 28 1 -0.0308 -3.8765 1.3575 29 1 0.8033 -9.0387 2.9195 30 1 3.5701 -5.7974 0.0897 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230932160.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:40 Heat of formation + Delta-G solvation = -22.501087 kcal Electronic energy + Delta-G solvation = -19814.849773 eV Core-core repulsion = 16358.644941 eV Total energy + Delta-G solvation = -3456.204832 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.047 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.98539 -42.42863 -40.46701 -37.19819 -36.45201 -35.25560 -33.26544 -31.68611 -30.38171 -29.80168 -27.27740 -24.83145 -23.62709 -22.80130 -22.23088 -19.93057 -18.92129 -18.21653 -17.75344 -17.13163 -16.90839 -16.76030 -16.35048 -16.00105 -15.51572 -15.46695 -15.18304 -14.80127 -14.26682 -13.87445 -13.54555 -13.36699 -13.13720 -12.94015 -12.79239 -12.57225 -12.13006 -12.01863 -11.93024 -11.43923 -11.30039 -11.15622 -10.85095 -10.57409 -9.32047 -8.82710 -8.38020 -6.53150 -0.20556 0.37843 1.41242 1.45607 1.49977 1.55453 1.60849 1.67015 2.21048 2.49980 2.59458 2.97258 3.21514 3.58717 3.74316 3.90282 4.03372 4.22925 4.32397 4.40897 4.55055 4.75964 4.85501 4.95058 5.17377 5.25422 5.40179 5.54449 5.66433 5.82135 6.21023 6.43741 6.55520 6.73409 7.19054 8.68535 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.022885 B = 0.005255 C = 0.004973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.189822 B = 5327.432412 C = 5629.107329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.029 3.971 3 Si 0.975 3.025 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.269 1.269 7 C -0.547 4.547 8 H 0.070 0.930 9 C 0.209 3.791 10 H 0.039 0.961 11 C -0.028 4.028 12 Cl -0.222 7.222 13 O -0.313 6.313 14 C 0.208 3.792 15 C -0.246 4.246 16 C 0.186 3.814 17 N -0.505 5.505 18 H 0.450 0.550 19 N -0.275 5.275 20 C 0.101 3.899 21 C -0.266 4.266 22 C 0.213 3.787 23 F -0.122 7.122 24 C -0.224 4.224 25 H 0.276 0.724 26 H 0.119 0.881 27 H 0.078 0.922 28 H 0.132 0.868 29 H 0.230 0.770 30 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.923 -9.805 2.327 10.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.172 4.172 3 Si 0.799 3.201 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.193 1.193 7 C -0.585 4.585 8 H 0.088 0.912 9 C 0.155 3.845 10 H 0.057 0.943 11 C -0.091 4.091 12 Cl -0.196 7.196 13 O -0.225 6.225 14 C 0.157 3.843 15 C -0.270 4.270 16 C 0.067 3.933 17 N -0.220 5.220 18 H 0.297 0.703 19 N -0.090 5.090 20 C -0.095 4.095 21 C -0.275 4.275 22 C 0.191 3.809 23 F -0.100 7.100 24 C -0.245 4.245 25 H 0.085 0.915 26 H 0.137 0.863 27 H 0.097 0.903 28 H 0.150 0.850 29 H 0.246 0.754 30 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -0.195 -10.028 2.925 10.448 hybrid contribution 0.354 1.410 -0.496 1.536 sum 0.159 -8.618 2.429 8.956 Atomic orbital electron populations 1.69862 1.07011 1.29022 1.48643 1.25663 0.95897 1.02487 0.93163 0.85271 0.78454 0.77613 0.78757 1.19420 1.20355 1.19324 1.21233 0.94315 0.89100 1.53827 0.91215 1.20408 0.87372 0.82743 0.94027 0.94326 1.25447 0.95216 0.87048 1.01405 1.98644 1.75282 1.46673 1.99009 1.86125 1.46150 1.21558 1.68654 1.18528 0.90970 0.86669 0.88105 1.20114 1.00356 0.98567 1.07938 1.18225 0.88459 0.93993 0.92613 1.46086 1.19237 1.11246 1.45469 0.70325 1.76614 1.19729 0.91806 1.20819 1.24334 0.90605 1.00400 0.94117 1.18879 0.98777 0.97277 1.12569 1.16111 0.86614 0.82979 0.95197 1.91506 1.71316 1.52679 1.94504 1.19884 1.04095 0.91058 1.09475 0.91463 0.86333 0.90315 0.84997 0.75398 0.82532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -45.43 11.29 21.45 0.24 -45.19 16 2 C 0.03 1.43 5.29 84.66 0.45 1.88 16 3 Si 0.98 38.96 29.54 68.60 2.03 40.98 16 4 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 5 H -0.28 -10.88 7.11 99.48 0.71 -10.18 16 6 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 7 C -0.55 -27.44 8.89 25.60 0.23 -27.21 16 8 H 0.07 3.53 7.81 -2.91 -0.02 3.50 16 9 C 0.21 9.73 2.19 29.85 0.07 9.80 16 10 H 0.04 1.92 5.39 -2.39 -0.01 1.90 16 11 C -0.03 -1.23 6.17 71.98 0.44 -0.79 16 12 Cl -0.22 -8.68 25.54 -2.72 -0.07 -8.74 16 13 O -0.31 -13.66 9.73 -92.36 -0.90 -14.56 16 14 C 0.21 7.96 5.97 22.52 0.13 8.09 16 15 C -0.25 -9.12 7.02 22.47 0.16 -8.96 16 16 C 0.19 6.13 7.33 39.16 0.29 6.41 16 17 N -0.50 -14.57 7.44 -51.55 -0.38 -14.95 16 18 H 0.45 10.93 8.96 -213.37 -1.91 9.01 16 19 N -0.28 -7.61 12.56 -56.23 -0.71 -8.32 16 20 C 0.10 2.51 12.05 85.78 1.03 3.55 16 21 C -0.27 -8.01 6.16 -21.33 -0.13 -8.14 16 22 C 0.21 6.35 7.30 22.37 0.16 6.51 16 23 F -0.12 -3.19 17.27 44.97 0.78 -2.42 16 24 C -0.22 -7.37 9.87 22.15 0.22 -7.15 16 25 H 0.28 13.04 8.31 -92.71 -0.77 12.27 16 26 H 0.12 5.59 5.95 -2.38 -0.01 5.57 16 27 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 28 H 0.13 5.28 5.05 -2.91 -0.01 5.26 16 29 H 0.23 3.60 8.06 -2.91 -0.02 3.57 16 30 H 0.16 4.60 8.06 -2.92 -0.02 4.58 16 Total: -1.00 -53.40 278.66 3.34 -50.06 By element: Atomic # 1 Polarization: 19.84 SS G_CDS: -0.69 Total: 19.14 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: 3.05 Total: -16.01 kcal Atomic # 7 Polarization: -67.61 SS G_CDS: -0.85 Total: -68.46 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: -0.90 Total: -14.56 kcal Atomic # 9 Polarization: -3.19 SS G_CDS: 0.78 Total: -2.42 kcal Atomic # 14 Polarization: 38.96 SS G_CDS: 2.03 Total: 40.98 kcal Atomic # 17 Polarization: -8.68 SS G_CDS: -0.07 Total: -8.74 kcal Total: -53.40 3.34 -50.06 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230932160.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.557 kcal (2) G-P(sol) polarization free energy of solvation -53.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds