Wall clock time and date at job start Tue Mar 31 2020 05:20:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86794 * 120.00084 * 2 1 4 4 H 1.48506 * 109.47056 * 270.00056 * 3 2 1 5 5 H 1.48501 * 109.47403 * 29.99937 * 3 2 1 6 6 H 1.48493 * 109.47309 * 150.00196 * 3 2 1 7 7 C 1.37877 * 119.99589 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00411 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 179.97438 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47267 * 289.35248 * 12 11 10 14 14 C 1.34857 * 125.88040 * 264.69763 * 13 12 11 15 15 C 1.40935 * 107.42904 * 179.85089 * 14 13 12 16 16 Br 1.89093 * 126.29436 * 180.14004 * 15 14 13 17 17 C 1.34896 * 107.40700 * 0.40736 * 15 14 13 18 18 N 1.36332 * 125.88198 * 84.99978 * 13 12 11 19 19 H 0.96998 * 125.63690 * 359.97438 * 18 13 12 20 20 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 21 21 H 0.96995 * 119.99785 * 359.97438 * 1 2 3 22 22 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 23 23 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 24 24 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 25 25 H 1.08997 * 109.47246 * 49.35399 * 12 11 10 26 26 H 1.09007 * 109.46957 * 169.35176 * 12 11 10 27 27 H 1.07999 * 126.28382 * 359.97438 * 14 13 12 28 28 H 1.08000 * 125.90166 * 179.77718 * 17 15 14 29 29 H 1.09007 * 113.75652 * 270.36911 * 20 11 10 30 30 H 1.08993 * 113.76177 * 139.00817 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 6 4.1317 -0.9797 1.3914 11 7 5.0990 -2.0373 1.0109 12 6 5.3317 -2.9643 2.1266 13 6 6.1211 -2.2659 3.2037 14 6 7.4600 -2.3122 3.3583 15 6 7.7831 -1.5214 4.4792 16 35 9.5163 -1.2137 5.1698 17 6 6.6280 -1.0292 4.9723 18 7 5.6042 -1.4831 4.1930 19 1 4.6641 -1.2818 4.3213 20 6 4.1311 -2.6025 0.0450 21 1 -0.4849 0.8400 0.0004 22 1 3.9361 -0.5532 -0.7738 23 1 4.5830 0.0035 1.5245 24 1 3.4736 -1.2616 2.2133 25 1 4.3746 -3.2920 2.5323 26 1 5.8904 -3.8295 1.7696 27 1 8.1568 -2.8540 2.7360 28 1 6.5304 -0.3865 5.8348 29 1 3.4728 -3.3581 0.4740 30 1 4.5821 -2.9150 -0.8968 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231571936.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:27 Heat of formation + Delta-G solvation = 80.140752 kcal Electronic energy + Delta-G solvation = -14639.256180 eV Core-core repulsion = 12096.534851 eV Total energy + Delta-G solvation = -2542.721329 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.20680 -38.83811 -32.91440 -32.09343 -31.34580 -29.54210 -27.93893 -25.40315 -25.28951 -22.22339 -20.30244 -20.09785 -18.70253 -17.54901 -17.02324 -15.44051 -14.72063 -14.40273 -13.98368 -13.75849 -13.50609 -13.22790 -12.69134 -12.56829 -12.07394 -11.93079 -11.60281 -11.07137 -10.99634 -10.53287 -10.16908 -10.08576 -9.98397 -9.67182 -9.25046 -8.67931 -8.63515 -8.21060 -7.97923 -6.19128 -4.20218 1.88036 2.14971 2.77369 3.22517 3.31672 3.35245 3.39720 4.33810 4.68685 4.90591 5.07376 5.11337 5.28018 5.49939 5.70417 5.76546 5.91253 6.00070 6.11722 6.18050 6.31812 6.40324 6.61992 6.73844 6.87535 7.00167 7.26396 7.48430 7.60420 7.69985 8.39119 8.83559 9.43592 10.93271 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.035043 B = 0.004056 C = 0.003843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 798.821602 B = 6901.157707 C = 7283.712605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.075 3.925 3 Si 0.873 3.127 4 H -0.276 1.276 5 H -0.289 1.289 6 H -0.256 1.256 7 C -0.516 4.516 8 H 0.074 0.926 9 C 0.000 4.000 10 C -0.007 4.007 11 N -0.482 5.482 12 C 0.085 3.915 13 C 0.050 3.950 14 C -0.162 4.162 15 C -0.168 4.168 16 Br -0.047 7.047 17 C 0.024 3.976 18 N -0.544 5.544 19 H 0.420 0.580 20 C 0.012 3.988 21 H 0.265 0.735 22 H 0.054 0.946 23 H 0.068 0.932 24 H 0.059 0.941 25 H 0.047 0.953 26 H 0.092 0.908 27 H 0.142 0.858 28 H 0.170 0.830 29 H 0.064 0.936 30 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.149 -3.246 11.392 20.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.128 4.128 3 Si 0.700 3.300 4 H -0.202 1.202 5 H -0.215 1.215 6 H -0.180 1.180 7 C -0.554 4.554 8 H 0.092 0.908 9 C -0.020 4.020 10 C -0.136 4.136 11 N -0.205 5.205 12 C -0.044 4.044 13 C -0.064 4.064 14 C -0.188 4.188 15 C -0.254 4.254 16 Br 0.037 6.963 17 C -0.112 4.112 18 N -0.139 5.139 19 H 0.258 0.742 20 C -0.116 4.116 21 H 0.075 0.925 22 H 0.072 0.928 23 H 0.086 0.914 24 H 0.077 0.923 25 H 0.065 0.935 26 H 0.111 0.889 27 H 0.159 0.841 28 H 0.187 0.813 29 H 0.082 0.918 30 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 17.117 -2.841 11.449 20.787 hybrid contribution -1.210 0.743 0.380 1.470 sum 15.906 -2.098 11.829 19.933 Atomic orbital electron populations 1.69911 1.06407 1.27168 1.50037 1.25004 0.94622 0.99212 0.93966 0.86938 0.80740 0.83413 0.78922 1.20168 1.21519 1.18012 1.20975 0.88352 0.94534 1.51535 0.90789 1.20722 0.96364 0.92490 0.92396 1.24493 0.92688 0.95163 1.01273 1.68745 1.34557 1.08150 1.09070 1.21161 0.97730 0.95612 0.89888 1.20287 0.93360 0.99623 0.93109 1.20470 0.93815 1.05161 0.99346 1.20976 0.90188 1.10711 1.03533 1.96524 1.18078 1.96068 1.85670 1.21619 0.85972 1.04177 0.99412 1.42086 1.09325 1.39070 1.23416 0.74234 1.23918 0.92639 0.99031 0.96051 0.92544 0.92828 0.91396 0.92300 0.93456 0.88945 0.84064 0.81272 0.91804 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.47 13.96 55.43 0.77 -25.70 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 20.66 27.08 -169.99 -4.60 16.05 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.26 -5.74 5.27 56.52 0.30 -5.44 16 7 C -0.52 -13.75 9.33 -34.44 -0.32 -14.07 16 8 H 0.07 2.14 8.06 -52.49 -0.42 1.71 16 9 C 0.00 -0.01 2.88 -90.84 -0.26 -0.27 16 10 C -0.01 -0.15 6.07 -2.57 -0.02 -0.16 16 11 N -0.48 -8.71 6.26 -239.48 -1.50 -10.21 16 12 C 0.09 1.27 5.36 -4.97 -0.03 1.25 16 13 C 0.05 0.72 6.22 -81.79 -0.51 0.21 16 14 C -0.16 -2.33 10.75 -39.76 -0.43 -2.76 16 15 C -0.17 -2.27 6.57 -39.75 -0.26 -2.53 16 16 Br -0.05 -0.56 34.09 -68.01 -2.32 -2.88 16 17 C 0.02 0.29 11.91 -16.69 -0.20 0.09 16 18 N -0.54 -7.03 6.00 -9.09 -0.05 -7.09 16 19 H 0.42 4.79 8.96 -40.82 -0.37 4.42 16 20 C 0.01 0.22 7.53 -2.76 -0.02 0.20 16 21 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 22 H 0.05 1.24 7.20 -51.93 -0.37 0.86 16 23 H 0.07 1.41 6.82 -51.93 -0.35 1.06 16 24 H 0.06 1.16 7.74 -51.93 -0.40 0.76 16 25 H 0.05 0.70 7.69 -51.93 -0.40 0.30 16 26 H 0.09 1.24 8.14 -51.92 -0.42 0.82 16 27 H 0.14 1.91 8.06 -52.49 -0.42 1.48 16 28 H 0.17 1.60 8.06 -52.49 -0.42 1.18 16 29 H 0.06 1.19 7.74 -51.92 -0.40 0.79 16 30 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 273.89 15.07 4.13 4.13 Total: -1.00 -29.19 273.89 -9.36 -38.55 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -3.65 Total: 3.22 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: -2.14 Total: -16.07 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: -0.78 Total: -43.00 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.60 Total: 16.05 kcal Atomic # 35 Polarization: -0.56 SS G_CDS: -2.32 Total: -2.88 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -29.19 -9.36 -38.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231571936.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.693 kcal (2) G-P(sol) polarization free energy of solvation -29.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds