Wall clock time and date at job start Tue Mar 31 2020 05:22:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38620 * 120.78288 * 2 1 4 4 C 1.38315 * 119.15642 * 179.74955 * 3 2 1 5 5 Br 1.89100 * 119.62988 * 180.25098 * 4 3 2 6 6 N 1.31960 * 120.73595 * 0.52674 * 4 3 2 7 7 C 1.31869 * 121.71191 * 359.72797 * 6 4 3 8 8 C 1.38199 * 120.77785 * 0.02562 * 7 6 4 9 9 C 1.50700 * 120.40941 * 180.02562 * 8 7 6 10 10 N 1.46498 * 109.47263 * 100.31396 * 9 8 7 11 11 C 1.46501 * 120.00150 * 274.55501 * 10 9 8 12 12 C 1.36940 * 119.99429 * 94.55597 * 10 9 8 13 13 H 1.07997 * 120.00354 * 22.40183 * 12 10 9 14 14 C 1.38817 * 119.99421 * 202.39630 * 12 10 9 15 15 N 1.31614 * 120.00151 * 11.33985 * 14 12 10 16 16 Si 1.86805 * 119.99640 * 191.33930 * 14 12 10 17 17 H 1.48501 * 109.47017 * 0.02562 * 16 14 12 18 18 H 1.48496 * 109.47239 * 120.00220 * 16 14 12 19 19 H 1.48501 * 109.46881 * 240.00537 * 16 14 12 20 20 H 1.09000 * 109.47196 * 264.44009 * 1 2 3 21 21 H 1.09004 * 109.46831 * 144.44346 * 1 2 3 22 22 H 1.08989 * 109.47064 * 24.44517 * 1 2 3 23 23 H 1.08002 * 120.42204 * 359.97291 * 3 2 1 24 24 H 1.08001 * 119.60960 * 179.97438 * 7 6 4 25 25 H 1.09002 * 109.46994 * 220.32230 * 9 8 7 26 26 H 1.09004 * 109.46710 * 340.31315 * 9 8 7 27 27 H 1.08998 * 109.46701 * 94.85396 * 11 10 9 28 28 H 1.09003 * 109.46586 * 214.85085 * 11 10 9 29 29 H 1.08997 * 109.47248 * 334.84630 * 11 10 9 30 30 H 0.97004 * 119.99610 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.1909 0.0000 4 6 3.5991 1.1517 0.0053 5 35 4.5802 2.7682 0.0125 6 7 4.2411 -0.0012 -0.0002 7 6 3.5982 -1.1526 -0.0054 8 6 2.2167 -1.1912 -0.0059 9 6 1.4905 -2.5117 -0.0114 10 7 1.0381 -2.8258 1.3461 11 6 1.9426 -3.4974 2.2827 12 6 -0.2303 -2.4917 1.7395 13 1 -1.0029 -2.3408 1.0002 14 6 -0.5229 -2.3471 3.0888 15 7 0.4512 -2.3089 3.9730 16 14 -2.2993 -2.2067 3.6493 17 1 -3.1979 -2.2778 2.4691 18 1 -2.6147 -3.3211 4.5787 19 1 -2.4976 -0.9102 4.3456 20 1 -0.3633 -0.0996 1.0228 21 1 -0.3633 -0.8361 -0.5976 22 1 -0.3633 0.9354 -0.4252 23 1 1.6963 2.1374 -0.0004 24 1 4.1579 -2.0763 -0.0102 25 1 0.6291 -2.4498 -0.6764 26 1 2.1635 -3.2949 -0.3606 27 1 2.4451 -2.7526 2.8997 28 1 1.3704 -4.1714 2.9202 29 1 2.6851 -4.0680 1.7248 30 1 0.2466 -2.2075 4.9158 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232319720.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:51 Heat of formation + Delta-G solvation = 54.030475 kcal Electronic energy + Delta-G solvation = -15100.790260 eV Core-core repulsion = 12556.936704 eV Total energy + Delta-G solvation = -2543.853556 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.88647 -35.96346 -33.47124 -32.33826 -31.17284 -29.45668 -27.57349 -26.24049 -25.41063 -22.56566 -21.79766 -20.13178 -16.99283 -16.22431 -15.87326 -15.12650 -14.71034 -14.16830 -13.50407 -13.26127 -13.15241 -12.51684 -12.27242 -12.18231 -11.81555 -11.35260 -11.02378 -10.89341 -10.74904 -10.60368 -10.39988 -10.22291 -10.06360 -10.01913 -9.15843 -8.97065 -8.66344 -8.32956 -6.92696 -5.86557 -3.30809 1.37705 1.69268 1.69918 3.28073 3.35737 3.37572 4.07706 4.39388 4.86770 5.21867 5.31237 5.34606 5.46445 5.57476 5.66101 5.85782 6.04857 6.14879 6.21347 6.41187 6.51404 6.65680 6.72483 6.96478 7.09794 7.27843 7.62186 7.69079 8.16517 8.23472 9.07227 9.69254 10.18289 11.17029 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.028311 B = 0.005267 C = 0.004984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.769554 B = 5314.696903 C = 5616.719933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.014 4.014 3 C -0.144 4.144 4 C 0.106 3.894 5 Br -0.037 7.037 6 N -0.472 5.472 7 C 0.104 3.896 8 C -0.119 4.119 9 C 0.181 3.819 10 N -0.587 5.587 11 C 0.161 3.839 12 C -0.254 4.254 13 H 0.074 0.926 14 C 0.004 3.996 15 N -0.899 5.899 16 Si 0.901 3.099 17 H -0.276 1.276 18 H -0.288 1.288 19 H -0.289 1.289 20 H 0.100 0.900 21 H 0.073 0.927 22 H 0.052 0.948 23 H 0.133 0.867 24 H 0.154 0.846 25 H 0.064 0.936 26 H 0.051 0.949 27 H 0.030 0.970 28 H 0.048 0.952 29 H 0.000 1.000 30 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.640 6.802 -8.947 12.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.023 4.023 3 C -0.167 4.167 4 C -0.111 4.111 5 Br 0.047 6.953 6 N -0.182 5.182 7 C -0.056 4.056 8 C -0.126 4.126 9 C 0.054 3.946 10 N -0.307 5.307 11 C 0.017 3.983 12 C -0.383 4.383 13 H 0.092 0.908 14 C -0.196 4.196 15 N -0.543 5.543 16 Si 0.731 3.269 17 H -0.201 1.201 18 H -0.215 1.215 19 H -0.216 1.216 20 H 0.119 0.881 21 H 0.092 0.908 22 H 0.071 0.929 23 H 0.151 0.849 24 H 0.172 0.828 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.066 0.934 29 H 0.018 0.982 30 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 5.882 7.353 -8.717 12.832 hybrid contribution -1.815 -0.050 0.706 1.948 sum 4.067 7.303 -8.011 11.578 Atomic orbital electron populations 1.20954 0.89580 1.01276 1.04948 1.20164 0.97262 0.91486 0.93391 1.21734 0.92621 0.99451 1.02880 1.22312 0.90766 0.91999 1.05977 1.96635 1.75858 1.25076 1.97749 1.67238 1.41003 0.97536 1.12467 1.22505 0.91606 0.94632 0.96845 1.22236 0.94957 0.99137 0.96248 1.19977 0.96178 0.89163 0.89322 1.44172 1.12147 1.65098 1.09260 1.20859 0.91382 0.94946 0.91150 1.19291 0.85300 1.42507 0.91212 0.90818 1.25099 0.97403 1.00317 0.96738 1.70078 1.29782 1.53097 1.01324 0.86237 0.84467 0.77489 0.78728 1.20077 1.21461 1.21606 0.88134 0.90824 0.92898 0.84881 0.82850 0.91835 0.93088 0.95204 0.93366 0.98153 0.93554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.87 8.31 36.01 0.30 -1.57 16 2 C -0.01 -0.25 5.92 -104.32 -0.62 -0.87 16 3 C -0.14 -2.49 9.52 -39.41 -0.38 -2.86 16 4 C 0.11 1.89 7.16 -17.47 -0.13 1.77 16 5 Br -0.04 -0.55 33.87 -68.01 -2.30 -2.85 16 6 N -0.47 -8.93 10.32 -11.64 -0.12 -9.05 16 7 C 0.10 1.88 10.83 -17.55 -0.19 1.69 16 8 C -0.12 -2.23 5.48 -104.48 -0.57 -2.80 16 9 C 0.18 3.40 5.41 -5.19 -0.03 3.37 16 10 N -0.59 -13.51 2.91 -182.50 -0.53 -14.04 16 11 C 0.16 3.77 9.01 59.85 0.54 4.31 16 12 C -0.25 -6.25 7.30 -15.06 -0.11 -6.36 16 13 H 0.07 1.74 7.21 -52.49 -0.38 1.37 16 14 C 0.00 0.10 5.13 -17.43 -0.09 0.01 16 15 N -0.90 -25.01 10.58 55.49 0.59 -24.43 16 16 Si 0.90 20.54 29.57 -169.99 -5.03 15.52 16 17 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H 0.10 1.99 6.83 -51.93 -0.35 1.64 16 21 H 0.07 1.19 6.17 -51.93 -0.32 0.87 16 22 H 0.05 0.73 8.07 -51.94 -0.42 0.32 16 23 H 0.13 1.97 8.06 -52.49 -0.42 1.55 16 24 H 0.15 2.43 8.04 -52.49 -0.42 2.01 16 25 H 0.06 1.12 6.44 -51.93 -0.33 0.79 16 26 H 0.05 0.85 7.81 -51.93 -0.41 0.45 16 27 H 0.03 0.78 7.38 -51.93 -0.38 0.39 16 28 H 0.05 1.21 7.23 -51.93 -0.38 0.84 16 29 H 0.00 0.00 7.89 -51.93 -0.41 -0.41 16 30 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 272.06 15.07 4.10 4.10 Total: -1.00 -28.01 272.06 -7.92 -35.93 By element: Atomic # 1 Polarization: 1.49 SS G_CDS: -3.36 Total: -1.87 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -1.27 Total: -3.31 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: -0.06 Total: -47.51 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.03 Total: 15.52 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.30 Total: -2.85 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.01 -7.92 -35.93 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232319720.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.961 kcal (2) G-P(sol) polarization free energy of solvation -28.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds