Wall clock time and date at job start Tue Mar 31 2020 05:21:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31899 * 119.60968 * 2 1 4 4 C 1.31931 * 121.71446 * 180.02562 * 3 2 1 5 5 Br 1.89098 * 119.63368 * 179.72447 * 4 3 2 6 6 C 1.38355 * 120.73533 * 0.02562 * 4 3 2 7 7 C 1.38576 * 119.15220 * 359.97438 * 6 4 3 8 8 C 1.38155 * 119.61422 * 180.02562 * 2 1 3 9 9 C 1.50699 * 120.40578 * 0.02562 * 8 2 1 10 10 N 1.46494 * 109.47692 * 79.99610 * 9 8 2 11 11 C 1.46497 * 120.00349 * 270.00432 * 10 9 8 12 12 C 1.36942 * 120.00020 * 89.99618 * 10 9 8 13 13 H 1.08001 * 119.99651 * 23.65432 * 12 10 9 14 14 C 1.38807 * 120.00413 * 203.64750 * 12 10 9 15 15 N 1.31621 * 119.99939 * 11.22731 * 14 12 10 16 16 Si 1.86791 * 120.00295 * 191.22684 * 14 12 10 17 17 H 1.48498 * 109.47504 * 90.00043 * 16 14 12 18 18 H 1.48501 * 109.47359 * 210.00118 * 16 14 12 19 19 H 1.48508 * 109.47143 * 330.00089 * 16 14 12 20 20 H 1.08993 * 109.47152 * 89.99955 * 1 2 3 21 21 H 1.08997 * 109.47004 * 209.99615 * 1 2 3 22 22 H 1.08999 * 109.47271 * 329.99768 * 1 2 3 23 23 H 1.08006 * 120.42274 * 179.97438 * 6 4 3 24 24 H 1.07999 * 120.78231 * 179.97438 * 7 6 4 25 25 H 1.08995 * 109.47090 * 200.00079 * 9 8 2 26 26 H 1.09005 * 109.46586 * 319.99407 * 9 8 2 27 27 H 1.09009 * 109.47392 * 94.57597 * 11 10 9 28 28 H 1.08997 * 109.47382 * 214.58035 * 11 10 9 29 29 H 1.09003 * 109.46863 * 334.58046 * 11 10 9 30 30 H 0.96999 * 120.00087 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1587 1.1467 0.0000 4 6 3.4771 1.1952 -0.0005 5 35 4.3511 2.8721 -0.0084 6 6 4.2274 0.0328 -0.0016 7 6 3.5767 -1.1907 -0.0016 8 6 2.1897 -1.2011 -0.0005 9 6 1.4367 -2.5064 -0.0017 10 7 0.9853 -2.8087 -1.3622 11 6 -0.3227 -2.3357 -1.8222 12 6 1.7861 -3.5334 -2.2041 13 1 2.5379 -4.1942 -1.7985 14 6 1.6315 -3.4189 -3.5788 15 7 0.8786 -2.4621 -4.0789 16 14 2.4918 -4.6225 -4.7190 17 1 1.6068 -5.7889 -4.9666 18 1 2.7980 -3.9511 -6.0077 19 1 3.7549 -5.0845 -4.0892 20 1 -0.3633 0.0000 -1.0276 21 1 -0.3633 -0.8900 0.5138 22 1 -0.3634 0.8899 0.5139 23 1 5.3065 0.0783 -0.0024 24 1 4.1363 -2.1144 -0.0028 25 1 2.0914 -3.3039 0.3495 26 1 0.5730 -2.4282 0.6587 27 1 -0.2026 -1.3867 -2.3450 28 1 -0.7575 -3.0710 -2.4991 29 1 -0.9811 -2.1972 -0.9646 30 1 0.7702 -2.3822 -5.0395 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232323545.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:11 Heat of formation + Delta-G solvation = 56.983904 kcal Electronic energy + Delta-G solvation = -15075.436243 eV Core-core repulsion = 12531.710758 eV Total energy + Delta-G solvation = -2543.725485 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.91515 -35.94319 -33.03563 -32.58957 -31.09070 -29.87190 -27.96362 -25.78439 -25.43476 -22.38471 -21.97283 -20.34760 -16.97112 -16.11840 -15.97062 -15.04140 -14.69876 -14.20155 -13.54130 -13.22477 -13.07483 -12.74849 -12.41545 -12.11329 -11.86663 -11.21827 -11.13345 -10.95866 -10.66839 -10.48163 -10.36154 -10.19060 -10.04332 -10.00927 -9.28305 -9.13418 -8.66271 -8.20953 -6.90129 -5.86365 -3.31632 1.38622 1.68591 1.70632 3.30885 3.37041 3.38716 4.06831 4.40982 4.78686 5.22213 5.30686 5.36608 5.43022 5.57055 5.70874 5.84438 6.02751 6.09905 6.16208 6.38105 6.46752 6.51002 6.65900 6.85026 7.06907 7.25537 7.62142 7.69372 8.21816 8.25425 9.08501 9.69701 10.18408 11.17413 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.024692 B = 0.005474 C = 0.004992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.699049 B = 5114.220550 C = 5607.571807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.143 3.857 3 N -0.467 5.467 4 C 0.106 3.894 5 Br -0.037 7.037 6 C -0.145 4.145 7 C -0.063 4.063 8 C -0.112 4.112 9 C 0.180 3.820 10 N -0.585 5.585 11 C 0.157 3.843 12 C -0.259 4.259 13 H 0.071 0.929 14 C 0.006 3.994 15 N -0.899 5.899 16 Si 0.907 3.093 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.278 1.278 20 H 0.089 0.911 21 H 0.077 0.923 22 H 0.065 0.935 23 H 0.134 0.866 24 H 0.137 0.863 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.034 0.966 28 H 0.044 0.956 29 H 0.004 0.996 30 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.298 6.668 9.726 12.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.002 3.998 3 N -0.178 5.178 4 C -0.111 4.111 5 Br 0.047 6.953 6 C -0.168 4.168 7 C -0.091 4.091 8 C -0.118 4.118 9 C 0.052 3.948 10 N -0.305 5.305 11 C 0.013 3.987 12 C -0.388 4.388 13 H 0.089 0.911 14 C -0.193 4.193 15 N -0.542 5.542 16 Si 0.737 3.263 17 H -0.212 1.212 18 H -0.216 1.216 19 H -0.204 1.204 20 H 0.107 0.893 21 H 0.096 0.904 22 H 0.084 0.916 23 H 0.151 0.849 24 H 0.155 0.845 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.023 0.977 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.052 8.068 9.503 13.108 hybrid contribution 0.971 -1.473 -1.016 2.035 sum 5.023 6.595 8.487 11.864 Atomic orbital electron populations 1.20939 0.88823 1.02393 1.03971 1.20996 0.96747 0.86984 0.95056 1.67074 1.07869 1.30321 1.12556 1.22301 0.91841 0.90859 1.06061 1.96634 1.75371 1.25560 1.97753 1.21792 1.00702 0.91895 1.02369 1.21424 0.94262 0.97336 0.96049 1.22152 0.94783 0.99206 0.95693 1.20034 0.95854 0.89940 0.88922 1.44169 1.15751 1.60553 1.10032 1.21052 0.83854 0.99442 0.94327 1.19248 1.16005 1.16436 0.87124 0.91111 1.25130 0.99356 0.97545 0.97319 1.70051 1.41348 1.31137 1.11708 0.86217 0.79318 0.80418 0.80364 1.21250 1.21641 1.20359 0.89299 0.90406 0.91596 0.84855 0.84494 0.92384 0.92494 0.94799 0.93698 0.97721 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.74 8.31 36.01 0.30 -1.44 16 2 C 0.14 2.74 6.78 -82.59 -0.56 2.18 16 3 N -0.47 -9.17 10.24 -7.89 -0.08 -9.25 16 4 C 0.11 1.91 7.16 -17.47 -0.13 1.79 16 5 Br -0.04 -0.55 33.87 -68.01 -2.30 -2.86 16 6 C -0.14 -2.43 9.84 -39.41 -0.39 -2.82 16 7 C -0.06 -1.12 9.82 -39.29 -0.39 -1.50 16 8 C -0.11 -2.13 5.48 -104.48 -0.57 -2.71 16 9 C 0.18 3.43 5.38 -5.20 -0.03 3.41 16 10 N -0.58 -13.72 2.91 -182.51 -0.53 -14.25 16 11 C 0.16 3.61 7.24 59.85 0.43 4.04 16 12 C -0.26 -6.72 9.66 -15.06 -0.15 -6.87 16 13 H 0.07 1.79 7.85 -52.49 -0.41 1.37 16 14 C 0.01 0.17 5.13 -17.43 -0.09 0.08 16 15 N -0.90 -25.46 10.65 55.49 0.59 -24.87 16 16 Si 0.91 21.24 29.57 -169.99 -5.03 16.22 16 17 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 19 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 20 H 0.09 1.62 6.13 -51.93 -0.32 1.30 16 21 H 0.08 1.17 5.23 -51.93 -0.27 0.90 16 22 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 23 H 0.13 1.85 8.06 -52.48 -0.42 1.43 16 24 H 0.14 2.16 8.06 -52.49 -0.42 1.74 16 25 H 0.06 1.04 7.93 -51.93 -0.41 0.63 16 26 H 0.06 0.96 6.14 -51.93 -0.32 0.64 16 27 H 0.03 0.85 6.14 -51.92 -0.32 0.53 16 28 H 0.04 1.12 7.30 -51.93 -0.38 0.74 16 29 H 0.00 0.08 6.51 -51.93 -0.34 -0.25 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 LS Contribution 269.14 15.07 4.06 4.06 Total: -1.00 -29.20 269.14 -8.03 -37.22 By element: Atomic # 1 Polarization: 0.74 SS G_CDS: -3.17 Total: -2.43 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: -1.56 Total: -3.84 kcal Atomic # 7 Polarization: -48.35 SS G_CDS: -0.02 Total: -48.37 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.03 Total: 16.22 kcal Atomic # 35 Polarization: -0.55 SS G_CDS: -2.30 Total: -2.86 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.20 -8.03 -37.22 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232323545.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.207 kcal (2) G-P(sol) polarization free energy of solvation -29.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds