Wall clock time and date at job start Tue Mar 31 2020 05:27:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36942 * 119.99842 * 2 1 4 4 H 1.07998 * 119.99819 * 202.54124 * 3 2 1 5 5 C 1.38806 * 119.99919 * 22.54053 * 3 2 1 6 6 N 1.31625 * 119.99871 * 14.99693 * 5 3 2 7 7 Si 1.86794 * 120.00178 * 194.99159 * 5 3 2 8 8 H 1.48504 * 109.47197 * 90.00346 * 7 5 3 9 9 H 1.48498 * 109.47267 * 210.00292 * 7 5 3 10 10 H 1.48498 * 109.47239 * 330.00317 * 7 5 3 11 11 C 1.46505 * 120.00320 * 180.02562 * 2 1 3 12 12 C 1.50701 * 109.46806 * 269.99632 * 11 2 1 13 13 C 1.38153 * 120.03461 * 260.25718 * 12 11 2 14 14 C 1.38255 * 120.08707 * 180.29994 * 13 12 11 15 15 C 1.38303 * 120.15838 * 359.71491 * 14 13 12 16 16 C 1.38148 * 120.06371 * 0.02562 * 15 14 13 17 17 Br 1.89104 * 120.04242 * 179.97438 * 16 15 14 18 18 C 1.38861 * 120.03137 * 79.99936 * 12 11 2 19 19 N 1.39717 * 120.07681 * 359.97438 * 18 12 11 20 20 H 1.09002 * 109.46715 * 268.25172 * 1 2 3 21 21 H 1.08991 * 109.47181 * 28.25881 * 1 2 3 22 22 H 1.09004 * 109.46895 * 148.26343 * 1 2 3 23 23 H 0.97001 * 119.99443 * 179.97438 * 6 5 3 24 24 H 1.08996 * 109.47384 * 149.99761 * 11 2 1 25 25 H 1.08998 * 109.46617 * 29.99443 * 11 2 1 26 26 H 1.07996 * 119.95322 * 0.02562 * 13 12 11 27 27 H 1.08009 * 119.91421 * 179.69816 * 14 13 12 28 28 H 1.08003 * 119.96551 * 180.02562 * 15 14 13 29 29 H 0.96999 * 119.99950 * 179.72256 * 19 18 12 30 30 H 0.97002 * 120.00203 * 359.45455 * 19 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1678 1.2217 -0.3585 5 6 1.5351 2.3421 0.4608 6 7 0.4246 2.2621 1.1628 7 14 2.2842 4.0115 0.0849 8 1 1.7320 4.5251 -1.1944 9 1 1.9575 4.9588 1.1808 10 1 3.7586 3.8778 -0.0306 11 6 2.1976 -1.2687 -0.0006 12 6 2.4488 -1.7043 1.4201 13 6 3.6803 -1.4799 2.0046 14 6 3.9140 -1.8846 3.3058 15 6 2.9147 -2.5099 4.0290 16 6 1.6791 -2.7327 3.4526 17 35 0.3134 -3.5884 4.4418 18 6 1.4410 -2.3267 2.1447 19 7 0.1925 -2.5498 1.5585 20 1 -0.3633 -0.0314 1.0272 21 1 -0.3633 0.9051 -0.4865 22 1 -0.3633 -0.8740 -0.5406 23 1 -0.0046 3.0701 1.4851 24 1 3.1500 -1.1382 -0.5144 25 1 1.6085 -2.0281 -0.5147 26 1 4.4629 -0.9917 1.4429 27 1 4.8794 -1.7121 3.7584 28 1 3.1005 -2.8244 5.0454 29 1 -0.5094 -2.9883 2.0643 30 1 0.0264 -2.2626 0.6469 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232525778.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:21 Heat of formation + Delta-G solvation = 50.987190 kcal Electronic energy + Delta-G solvation = -15159.326206 eV Core-core repulsion = 12615.340684 eV Total energy + Delta-G solvation = -2543.985522 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.12066 -35.57636 -34.02681 -32.26201 -30.83809 -29.41351 -27.82849 -25.96359 -25.59199 -22.06555 -21.47736 -20.03128 -16.93462 -16.65282 -16.40290 -15.07175 -14.68136 -13.83548 -13.71165 -13.53968 -13.19498 -12.89368 -12.68686 -12.01840 -11.38651 -11.09480 -10.91377 -10.63240 -10.57351 -10.41924 -10.37239 -10.14498 -9.99141 -9.95968 -9.87203 -8.55547 -8.10497 -7.06085 -6.75053 -5.78057 -3.19644 1.78877 2.11095 2.12818 3.36974 3.43402 3.44851 4.23011 4.40469 4.52059 5.28699 5.41200 5.54352 5.66936 5.81263 5.89637 5.99333 6.27263 6.40622 6.53387 6.57590 6.70855 6.90273 7.20215 7.27777 7.35661 7.62783 7.77444 7.92099 8.20858 8.35352 9.17950 9.80723 10.29325 11.28392 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.027008 B = 0.005863 C = 0.005608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.470038 B = 4774.528652 C = 4991.752154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.159 3.841 2 N -0.589 5.589 3 C -0.254 4.254 4 H 0.070 0.930 5 C 0.004 3.996 6 N -0.901 5.901 7 Si 0.904 3.096 8 H -0.288 1.288 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.186 3.814 12 C -0.147 4.147 13 C -0.050 4.050 14 C -0.178 4.178 15 C -0.064 4.064 16 C -0.174 4.174 17 Br -0.079 7.079 18 C 0.260 3.740 19 N -0.868 5.868 20 H 0.028 0.972 21 H 0.055 0.945 22 H -0.008 1.008 23 H 0.253 0.747 24 H 0.058 0.942 25 H 0.042 0.958 26 H 0.120 0.880 27 H 0.117 0.883 28 H 0.119 0.881 29 H 0.393 0.607 30 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.974 -12.464 4.128 13.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.311 5.311 3 C -0.384 4.384 4 H 0.088 0.912 5 C -0.195 4.195 6 N -0.545 5.545 7 Si 0.735 3.265 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.059 3.941 12 C -0.155 4.155 13 C -0.070 4.070 14 C -0.199 4.199 15 C -0.084 4.084 16 C -0.258 4.258 17 Br 0.005 6.995 18 C 0.151 3.849 19 N -0.409 5.409 20 H 0.046 0.954 21 H 0.073 0.927 22 H 0.010 0.990 23 H 0.063 0.937 24 H 0.076 0.924 25 H 0.060 0.940 26 H 0.138 0.862 27 H 0.135 0.865 28 H 0.137 0.863 29 H 0.222 0.778 30 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.335 -12.611 4.513 13.398 hybrid contribution 0.223 1.265 -0.132 1.291 sum 0.558 -11.346 4.381 12.176 Atomic orbital electron populations 1.20893 0.82717 0.96481 0.98484 1.44136 1.01686 1.00411 1.84819 1.19207 0.98483 0.84941 1.35720 0.91196 1.25032 0.98127 0.98594 0.97785 1.70082 1.20249 1.27221 1.36951 0.86255 0.78754 0.84101 0.77439 1.21481 1.21800 1.20417 1.19817 0.96766 0.88220 0.89336 1.20659 0.92570 1.01171 1.01146 1.20855 0.96125 0.95561 0.94464 1.20759 0.99071 1.04579 0.95477 1.20591 0.91191 0.97803 0.98853 1.21002 0.95147 1.14845 0.94810 1.96484 1.50989 1.78953 1.73068 1.17241 0.86476 0.91548 0.89669 1.42969 1.11682 1.67869 1.18414 0.95383 0.92653 0.98954 0.93705 0.92394 0.93971 0.86158 0.86509 0.86342 0.77805 0.76483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.74 7.55 59.85 0.45 4.19 16 2 N -0.59 -14.24 2.90 -182.50 -0.53 -14.77 16 3 C -0.25 -6.80 9.65 -15.06 -0.15 -6.94 16 4 H 0.07 1.83 7.86 -52.49 -0.41 1.41 16 5 C 0.00 0.10 5.01 -17.43 -0.09 0.01 16 6 N -0.90 -26.11 10.84 55.49 0.60 -25.51 16 7 Si 0.90 21.71 29.58 -169.99 -5.03 16.68 16 8 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 11 C 0.19 3.72 5.39 -5.19 -0.03 3.69 16 12 C -0.15 -2.88 5.48 -104.42 -0.57 -3.46 16 13 C -0.05 -0.91 9.66 -39.61 -0.38 -1.29 16 14 C -0.18 -2.95 10.04 -39.55 -0.40 -3.34 16 15 C -0.06 -1.05 9.78 -39.59 -0.39 -1.44 16 16 C -0.17 -3.07 6.24 -39.33 -0.25 -3.31 16 17 Br -0.08 -1.18 32.12 -68.01 -2.18 -3.37 16 18 C 0.26 4.88 6.73 -83.75 -0.56 4.32 16 19 N -0.87 -14.63 8.35 32.43 0.27 -14.36 16 20 H 0.03 0.72 7.44 -51.93 -0.39 0.33 16 21 H 0.05 1.43 6.90 -51.93 -0.36 1.07 16 22 H -0.01 -0.15 6.73 -51.93 -0.35 -0.50 16 23 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 24 H 0.06 1.11 7.90 -51.93 -0.41 0.70 16 25 H 0.04 0.76 6.87 -51.93 -0.36 0.40 16 26 H 0.12 2.05 8.04 -52.49 -0.42 1.63 16 27 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 28 H 0.12 1.69 8.06 -52.48 -0.42 1.26 16 29 H 0.39 5.98 7.23 -40.82 -0.30 5.68 16 30 H 0.40 6.76 4.43 -40.82 -0.18 6.58 16 LS Contribution 268.47 15.07 4.05 4.05 Total: -1.00 -29.27 268.47 -8.33 -37.60 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -3.15 Total: 7.25 kcal Atomic # 6 Polarization: -5.22 SS G_CDS: -2.36 Total: -7.58 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.34 Total: -54.63 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Atomic # 35 Polarization: -1.18 SS G_CDS: -2.18 Total: -3.37 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -29.27 -8.33 -37.60 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232525778.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.590 kcal (2) G-P(sol) polarization free energy of solvation -29.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds