Wall clock time and date at job start Tue Mar 31 2020 05:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38756 * 120.79654 * 2 1 4 4 Br 1.89101 * 120.42600 * 359.74157 * 3 2 1 5 5 C 1.38273 * 119.14430 * 180.02562 * 3 2 1 6 6 N 1.31873 * 120.75092 * 359.97438 * 5 3 2 7 7 C 1.31851 * 121.73632 * 359.97438 * 6 5 3 8 8 C 1.38234 * 120.78777 * 0.02562 * 7 6 5 9 9 C 1.50693 * 120.41453 * 180.02562 * 8 7 6 10 10 N 1.46507 * 109.47154 * 259.97653 * 9 8 7 11 11 C 1.46494 * 119.99847 * 270.00417 * 10 9 8 12 12 C 1.36935 * 119.99880 * 90.00012 * 10 9 8 13 13 H 1.08001 * 119.99921 * 23.44371 * 12 10 9 14 14 C 1.38813 * 120.00167 * 203.44044 * 12 10 9 15 15 N 1.31624 * 119.99610 * 11.40392 * 14 12 10 16 16 Si 1.86801 * 120.00049 * 191.39969 * 14 12 10 17 17 H 1.48502 * 109.46691 * 90.00288 * 16 14 12 18 18 H 1.48497 * 109.46863 * 210.00027 * 16 14 12 19 19 H 1.48495 * 109.47174 * 329.99981 * 16 14 12 20 20 H 1.09002 * 109.46858 * 90.00297 * 1 2 3 21 21 H 1.08995 * 109.47645 * 210.00521 * 1 2 3 22 22 H 1.08995 * 109.47107 * 330.00799 * 1 2 3 23 23 H 1.07997 * 119.62198 * 179.97438 * 5 3 2 24 24 H 1.08008 * 119.60942 * 180.02562 * 7 6 5 25 25 H 1.08997 * 109.47381 * 19.97868 * 9 8 7 26 26 H 1.09005 * 109.47459 * 139.98417 * 9 8 7 27 27 H 1.09000 * 109.47500 * 94.32398 * 11 10 9 28 28 H 1.09011 * 109.46784 * 214.32190 * 11 10 9 29 29 H 1.08997 * 109.47536 * 334.32092 * 11 10 9 30 30 H 0.97002 * 119.99341 * 179.97438 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2174 1.1919 0.0000 4 35 1.3071 2.8494 -0.0074 5 6 3.5996 1.1520 -0.0005 6 7 4.2409 -0.0002 -0.0005 7 6 3.5983 -1.1516 0.0005 8 6 2.2166 -1.1907 0.0010 9 6 1.4908 -2.5114 0.0028 10 7 1.0444 -2.8251 -1.3569 11 6 -0.2736 -2.3799 -1.8161 12 6 1.8591 -3.5344 -2.1985 13 1 2.6271 -4.1762 -1.7927 14 6 1.6979 -3.4284 -3.5732 15 7 0.9246 -2.4887 -4.0746 16 14 2.5786 -4.6194 -4.7113 17 1 1.7160 -5.8041 -4.9514 18 1 2.8673 -3.9472 -6.0036 19 1 3.8525 -5.0536 -4.0838 20 1 -0.3633 -0.0001 -1.0277 21 1 -0.3634 -0.8899 0.5139 22 1 -0.3633 0.8900 0.5137 23 1 4.1602 2.0751 -0.0010 24 1 4.1583 -2.0752 0.0008 25 1 2.1623 -3.2946 0.3545 26 1 0.6262 -2.4501 0.6638 27 1 -0.1744 -1.4273 -2.3365 28 1 -0.6919 -3.1230 -2.4951 29 1 -0.9352 -2.2582 -0.9585 30 1 0.8123 -2.4145 -5.0352 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001232530840.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:26 Heat of formation + Delta-G solvation = 57.065390 kcal Electronic energy + Delta-G solvation = -15173.796464 eV Core-core repulsion = 12630.074512 eV Total energy + Delta-G solvation = -2543.721952 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.91157 -35.95919 -33.71192 -32.47269 -30.70018 -29.49773 -27.80909 -25.84467 -25.78567 -22.39642 -21.83613 -20.25803 -16.95568 -16.23412 -16.07610 -15.08452 -14.65345 -14.19018 -13.51817 -13.23168 -13.13649 -12.57530 -12.47909 -12.37199 -11.85674 -11.26163 -10.99600 -10.93418 -10.82998 -10.72862 -10.45679 -10.15283 -10.02903 -9.97962 -9.07596 -8.80975 -8.63720 -8.38311 -6.88965 -5.84698 -3.29849 1.36366 1.67205 1.84183 3.32989 3.39462 3.40708 4.11312 4.43307 4.84892 5.07666 5.16667 5.32748 5.42011 5.58088 5.60141 5.81391 5.96496 6.05887 6.14675 6.36082 6.37561 6.51789 6.65336 6.83450 7.05992 7.25766 7.62010 7.70951 8.26910 8.32329 9.10433 9.71684 10.20280 11.19468 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.026608 B = 0.005897 C = 0.005659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.044731 B = 4747.421536 C = 4946.347950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.006 4.006 3 C -0.147 4.147 4 Br -0.056 7.056 5 C 0.108 3.892 6 N -0.485 5.485 7 C 0.118 3.882 8 C -0.124 4.124 9 C 0.183 3.817 10 N -0.586 5.586 11 C 0.159 3.841 12 C -0.259 4.259 13 H 0.072 0.928 14 C 0.006 3.994 15 N -0.901 5.901 16 Si 0.907 3.093 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.278 1.278 20 H 0.091 0.909 21 H 0.076 0.924 22 H 0.067 0.933 23 H 0.152 0.848 24 H 0.156 0.844 25 H 0.060 0.940 26 H 0.054 0.946 27 H 0.032 0.968 28 H 0.045 0.955 29 H 0.002 0.998 30 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.951 8.539 9.779 13.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.016 4.016 3 C -0.229 4.229 4 Br 0.028 6.972 5 C -0.052 4.052 6 N -0.194 5.194 7 C -0.039 4.039 8 C -0.131 4.131 9 C 0.055 3.945 10 N -0.306 5.306 11 C 0.015 3.985 12 C -0.388 4.388 13 H 0.090 0.910 14 C -0.193 4.193 15 N -0.544 5.544 16 Si 0.737 3.263 17 H -0.213 1.213 18 H -0.217 1.217 19 H -0.203 1.203 20 H 0.109 0.891 21 H 0.094 0.906 22 H 0.086 0.914 23 H 0.169 0.831 24 H 0.173 0.827 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.050 0.950 28 H 0.063 0.937 29 H 0.020 0.980 30 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.464 9.131 9.557 13.226 hybrid contribution -0.099 -0.727 -1.015 1.252 sum -0.563 8.404 8.542 11.997 Atomic orbital electron populations 1.21157 0.90075 1.02755 1.04117 1.19994 0.97004 0.90894 0.93683 1.22754 0.96066 0.91502 1.12564 1.96573 1.77765 1.25007 1.97828 1.22481 0.89348 0.96732 0.96620 1.67712 1.40338 0.98245 1.13075 1.22690 0.91675 0.95649 0.93883 1.22136 0.95231 0.98118 0.97588 1.19973 0.96053 0.89626 0.88865 1.44151 1.14655 1.61743 1.10079 1.21009 0.83673 0.99598 0.94201 1.19259 1.14587 1.17834 0.87139 0.91032 1.25117 0.99291 0.97652 0.97285 1.70056 1.40804 1.31962 1.11611 0.86214 0.79420 0.80355 0.80341 1.21297 1.21673 1.20291 0.89074 0.90551 0.91427 0.83062 0.82724 0.92188 0.92740 0.94968 0.93669 0.97959 0.93534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.00 7.80 36.01 0.28 -1.72 16 2 C -0.01 -0.10 5.92 -104.29 -0.62 -0.72 16 3 C -0.15 -2.51 6.24 -39.38 -0.25 -2.76 16 4 Br -0.06 -0.80 31.98 -68.01 -2.17 -2.97 16 5 C 0.11 1.85 10.94 -17.52 -0.19 1.65 16 6 N -0.48 -9.06 10.36 -13.23 -0.14 -9.20 16 7 C 0.12 2.23 10.83 -17.54 -0.19 2.04 16 8 C -0.12 -2.36 5.48 -104.49 -0.57 -2.93 16 9 C 0.18 3.50 5.40 -5.19 -0.03 3.47 16 10 N -0.59 -13.82 2.91 -182.50 -0.53 -14.35 16 11 C 0.16 3.67 7.30 59.84 0.44 4.11 16 12 C -0.26 -6.78 9.66 -15.06 -0.15 -6.92 16 13 H 0.07 1.82 7.85 -52.49 -0.41 1.41 16 14 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 15 N -0.90 -25.60 10.65 55.49 0.59 -25.01 16 16 Si 0.91 21.47 29.57 -169.99 -5.03 16.44 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H 0.09 1.62 6.27 -51.93 -0.33 1.29 16 21 H 0.08 1.15 5.40 -51.93 -0.28 0.87 16 22 H 0.07 0.95 6.79 -51.93 -0.35 0.60 16 23 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 24 H 0.16 2.67 8.04 -52.48 -0.42 2.24 16 25 H 0.06 1.08 7.91 -51.93 -0.41 0.67 16 26 H 0.05 0.93 6.25 -51.93 -0.32 0.60 16 27 H 0.03 0.81 6.18 -51.93 -0.32 0.49 16 28 H 0.04 1.14 7.27 -51.92 -0.38 0.76 16 29 H 0.00 0.04 6.60 -51.93 -0.34 -0.30 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 266.41 15.07 4.01 4.01 Total: -1.00 -28.88 266.41 -7.75 -36.63 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: -3.13 Total: -1.85 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -1.36 Total: -3.70 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.08 Total: -48.57 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Atomic # 35 Polarization: -0.80 SS G_CDS: -2.17 Total: -2.97 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -28.88 -7.75 -36.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001232530840.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.695 kcal (2) G-P(sol) polarization free energy of solvation -28.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.629 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds