Wall clock time and date at job start Tue Mar 31 2020 05:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86803 * 119.99870 * 2 1 4 4 H 1.48501 * 109.47293 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47387 * 299.99667 * 3 2 1 6 6 H 1.48498 * 109.47096 * 60.00128 * 3 2 1 7 7 C 1.37877 * 120.00506 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00411 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99669 * 0.02562 * 7 2 1 10 10 C 1.53935 * 113.73364 * 81.23515 * 9 7 2 11 11 N 1.48296 * 86.06285 * 138.12975 * 10 9 7 12 12 C 1.46902 * 111.00409 * 222.41947 * 11 10 9 13 13 C 1.50702 * 109.47215 * 269.34877 * 12 11 10 14 14 C 1.34832 * 126.28136 * 89.99849 * 13 12 11 15 15 N 1.36445 * 108.22774 * 179.97438 * 14 13 12 16 16 H 0.96995 * 125.64185 * 180.02562 * 15 14 13 17 17 C 1.36357 * 108.71740 * 0.02562 * 15 14 13 18 18 Br 1.89098 * 125.89816 * 180.02562 * 17 15 14 19 19 C 1.34951 * 108.20429 * 359.75953 * 17 15 14 20 20 C 1.47961 * 90.75572 * 335.31010 * 11 10 9 21 21 H 0.96995 * 120.00309 * 0.02562 * 1 2 3 22 22 H 1.09002 * 112.93816 * 309.66794 * 9 7 2 23 23 H 1.09001 * 113.76001 * 252.50560 * 10 9 7 24 24 H 1.09000 * 113.75996 * 23.86376 * 10 9 7 25 25 H 1.09001 * 109.47358 * 29.35236 * 12 11 10 26 26 H 1.09004 * 109.47314 * 149.35402 * 12 11 10 27 27 H 1.07999 * 125.88594 * 0.02562 * 14 13 12 28 28 H 1.07992 * 126.29146 * 180.22803 * 19 17 15 29 29 H 1.09007 * 113.75652 * 270.36911 * 20 11 10 30 30 H 1.08992 * 113.86038 * 139.01836 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 0.7559 -2.9287 -1.3923 11 7 1.1880 -4.2953 -1.0119 12 6 1.8749 -4.9600 -2.1275 13 6 0.8703 -5.7197 -2.9549 14 6 0.1834 -5.2423 -4.0124 15 7 -0.6207 -6.2386 -4.4841 16 1 -1.2233 -6.1681 -5.2409 17 6 -0.4370 -7.3499 -3.7156 18 35 -1.3102 -9.0118 -3.9427 19 6 0.4799 -7.0608 -2.7686 20 6 2.1611 -3.7399 -0.0455 21 1 -0.4850 0.8400 -0.0004 22 1 0.4835 -2.5465 0.7729 23 1 -0.3212 -2.8279 -1.5258 24 1 1.3294 -2.4995 -2.2139 25 1 2.3663 -4.2117 -2.7493 26 1 2.6199 -5.6522 -1.7349 27 1 0.2576 -4.2437 -4.4170 28 1 0.8457 -7.7330 -2.0066 29 1 3.1447 -3.5475 -0.4741 30 1 2.2073 -4.2858 0.8967 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233434359.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:14 Heat of formation + Delta-G solvation = 80.336501 kcal Electronic energy + Delta-G solvation = -14423.333288 eV Core-core repulsion = 11880.620447 eV Total energy + Delta-G solvation = -2542.712841 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.02564 -38.44986 -32.99288 -31.94697 -31.54147 -29.10825 -27.48225 -25.33909 -24.79751 -22.30907 -20.54618 -19.26421 -18.49024 -17.81970 -16.48046 -14.91585 -14.49826 -14.34147 -13.85232 -13.74009 -13.55582 -13.32032 -12.45936 -11.91802 -11.80839 -11.53456 -11.06417 -10.97601 -10.96817 -10.54927 -10.52512 -10.20723 -9.71565 -9.27498 -8.96355 -8.59857 -8.40827 -7.96712 -7.75712 -6.02934 -4.07265 1.34614 2.10996 3.00122 3.28295 3.36810 3.40393 3.42377 4.42046 5.10335 5.24662 5.28172 5.45403 5.47228 5.79531 6.01802 6.12917 6.21147 6.36880 6.46075 6.56190 6.71627 6.87028 6.92061 7.03088 7.21189 7.35664 7.45351 7.76901 7.95350 8.18054 8.40567 8.95720 9.57515 11.06445 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.053194 B = 0.003330 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 526.246078 B = 8406.592644 C = 8554.700067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.058 0.942 9 C 0.037 3.963 10 C 0.017 3.983 11 N -0.485 5.485 12 C 0.090 3.910 13 C -0.136 4.136 14 C 0.018 3.982 15 N -0.548 5.548 16 H 0.415 0.585 17 C -0.008 4.008 18 Br -0.014 7.014 19 C -0.127 4.127 20 C -0.003 4.003 21 H 0.260 0.740 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.052 0.948 25 H 0.044 0.956 26 H 0.068 0.932 27 H 0.170 0.830 28 H 0.142 0.858 29 H 0.054 0.946 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.026 -16.445 -10.749 19.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.137 4.137 3 Si 0.717 3.283 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.076 0.924 9 C 0.018 3.982 10 C -0.112 4.112 11 N -0.207 5.207 12 C -0.039 4.039 13 C -0.143 4.143 14 C -0.115 4.115 15 N -0.145 5.145 16 H 0.252 0.748 17 C -0.197 4.197 18 Br 0.069 6.931 19 C -0.156 4.156 20 C -0.132 4.132 21 H 0.070 0.930 22 H 0.076 0.924 23 H 0.083 0.917 24 H 0.070 0.930 25 H 0.062 0.938 26 H 0.087 0.913 27 H 0.187 0.813 28 H 0.160 0.840 29 H 0.072 0.928 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.078 -17.434 -10.752 20.714 hybrid contribution 0.841 1.857 -0.785 2.185 sum -2.237 -15.577 -11.538 19.513 Atomic orbital electron populations 1.69980 1.05961 1.26507 1.49998 1.25007 0.94791 0.99066 0.94793 0.86593 0.80214 0.83926 0.77604 1.19736 1.21070 1.20955 1.21156 0.92813 0.90431 1.51094 0.92427 1.20317 0.93783 0.91010 0.93116 1.24107 0.99823 0.86449 1.00803 1.68589 1.25959 1.16873 1.09322 1.20939 0.93322 0.96815 0.92851 1.19432 1.02962 0.94055 0.97871 1.21880 0.96649 0.93661 0.99321 1.41867 1.35827 1.09548 1.27286 0.74806 1.21729 1.07795 0.88066 1.02130 1.96674 1.78334 1.20564 1.97560 1.20725 0.98927 0.96735 0.99193 1.24057 0.95321 0.97964 0.95818 0.93011 0.92428 0.91731 0.92963 0.93781 0.91338 0.81269 0.84020 0.92800 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 20.94 29.54 -169.99 -5.02 15.91 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.52 -14.01 8.77 -34.44 -0.30 -14.31 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.04 0.92 3.60 -90.84 -0.33 0.60 16 10 C 0.02 0.39 7.53 -2.57 -0.02 0.37 16 11 N -0.48 -9.92 6.15 -239.49 -1.47 -11.39 16 12 C 0.09 1.54 5.30 -4.97 -0.03 1.51 16 13 C -0.14 -2.15 5.70 -104.82 -0.60 -2.74 16 14 C 0.02 0.25 11.85 -16.71 -0.20 0.06 16 15 N -0.55 -6.60 6.08 -11.26 -0.07 -6.67 16 16 H 0.42 3.72 8.96 -40.82 -0.37 3.36 16 17 C -0.01 -0.11 7.65 -16.71 -0.13 -0.24 16 18 Br -0.01 -0.16 34.09 -68.01 -2.32 -2.48 16 19 C -0.13 -1.89 10.77 -39.74 -0.43 -2.32 16 20 C 0.00 -0.06 7.50 -2.76 -0.02 -0.08 16 21 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 22 H 0.06 1.60 8.14 -51.93 -0.42 1.17 16 23 H 0.06 1.55 8.14 -51.93 -0.42 1.13 16 24 H 0.05 1.19 7.43 -51.93 -0.39 0.80 16 25 H 0.04 0.75 7.38 -51.93 -0.38 0.37 16 26 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 27 H 0.17 2.08 8.06 -52.49 -0.42 1.65 16 28 H 0.14 1.97 8.06 -52.49 -0.42 1.55 16 29 H 0.05 1.10 7.88 -51.92 -0.41 0.69 16 30 H 0.06 1.30 8.14 -51.93 -0.42 0.87 16 LS Contribution 280.98 15.07 4.23 4.23 Total: -1.00 -29.20 280.98 -9.68 -38.88 By element: Atomic # 1 Polarization: 5.35 SS G_CDS: -3.62 Total: 1.73 kcal Atomic # 6 Polarization: -13.31 SS G_CDS: -2.14 Total: -15.45 kcal Atomic # 7 Polarization: -42.02 SS G_CDS: -0.81 Total: -42.83 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 35 Polarization: -0.16 SS G_CDS: -2.32 Total: -2.48 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -29.20 -9.68 -38.88 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233434359.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.213 kcal (2) G-P(sol) polarization free energy of solvation -29.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.876 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds