Wall clock time and date at job start Tue Mar 31 2020 05:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99478 * 2 1 4 4 H 1.48493 * 109.47329 * 270.00185 * 3 2 1 5 5 H 1.48501 * 109.47165 * 30.00338 * 3 2 1 6 6 H 1.48498 * 109.46917 * 150.00179 * 3 2 1 7 7 C 1.37874 * 120.00409 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99878 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99898 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.47029 * 300.00451 * 9 7 2 11 11 C 1.53002 * 109.47001 * 60.00095 * 9 7 2 12 12 Cl 1.80303 * 109.47178 * 184.99505 * 11 9 7 13 13 O 1.42898 * 109.47294 * 180.02562 * 9 7 2 14 14 C 1.35280 * 117.00297 * 149.99937 * 13 9 7 15 15 N 1.30759 * 125.03337 * 359.97438 * 14 13 9 16 16 C 1.35904 * 109.64033 * 180.02562 * 15 14 13 17 17 C 1.39775 * 133.42684 * 180.02562 * 16 15 14 18 18 C 1.37642 * 119.82287 * 180.02562 * 17 16 15 19 19 C 1.38736 * 120.51759 * 359.96215 * 18 17 16 20 20 C 1.38114 * 120.40481 * 0.02562 * 19 18 17 21 21 F 1.35098 * 120.09881 * 179.97438 * 20 19 18 22 22 C 1.38885 * 119.80727 * 359.97438 * 20 19 18 23 23 N 1.36352 * 125.03887 * 180.29858 * 14 13 9 24 24 H 0.97002 * 126.37286 * 0.02868 * 23 14 13 25 25 H 0.96993 * 120.00218 * 359.97438 * 1 2 3 26 26 H 1.08993 * 109.47160 * 305.00310 * 11 9 7 27 27 H 1.09011 * 109.46914 * 64.99979 * 11 9 7 28 28 H 1.08004 * 120.08985 * 359.97204 * 17 16 15 29 29 H 1.07995 * 119.74314 * 179.97438 * 18 17 16 30 30 H 1.08002 * 119.79292 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4403 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0847 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6248 -2.5571 0.8897 11 6 0.3711 -2.5799 -1.2495 12 17 -0.6392 -4.0715 -1.1773 13 8 2.1798 -3.5852 -0.0005 14 6 1.7856 -4.7304 0.6021 15 7 0.6271 -4.9142 1.1800 16 6 0.5621 -6.1754 1.6822 17 6 -0.4216 -6.8825 2.3794 18 6 -0.1863 -8.1827 2.7651 19 6 1.0205 -8.7986 2.4667 20 6 2.0031 -8.1144 1.7783 21 9 3.1762 -8.7200 1.4915 22 6 1.7818 -6.8019 1.3818 23 7 2.5397 -5.8620 0.7025 24 1 3.4389 -5.9862 0.3605 25 1 -0.4850 0.8400 0.0004 26 1 -0.2763 -1.7043 -1.2950 27 1 1.0026 -2.6114 -2.1375 28 1 -1.3635 -6.4097 2.6155 29 1 -0.9471 -8.7277 3.3040 30 1 1.1929 -9.8191 2.7754 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001233929949.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:35 Heat of formation + Delta-G solvation = -19.610419 kcal Electronic energy + Delta-G solvation = -19693.518345 eV Core-core repulsion = 16237.438861 eV Total energy + Delta-G solvation = -3456.079484 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.047 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -48.81493 -41.71038 -38.24103 -36.49228 -34.70784 -33.46408 -32.63686 -29.82174 -29.29976 -28.53509 -25.38711 -22.98303 -22.43087 -21.80722 -20.36777 -18.50332 -17.65349 -16.89359 -16.58627 -15.97144 -15.61365 -15.42729 -15.16112 -14.76628 -14.30137 -13.54402 -13.46484 -13.11890 -12.86725 -12.08052 -12.00129 -11.75631 -11.62725 -11.44073 -11.18781 -11.06017 -10.66081 -10.41134 -10.31827 -9.90813 -9.48052 -9.28537 -9.02328 -8.72128 -8.06314 -7.53510 -6.47354 -4.57411 1.08573 1.54921 2.46504 3.10108 3.14049 3.18110 3.22005 3.48477 4.00613 4.03276 4.25903 4.39620 4.65564 4.88723 4.93876 5.20455 5.41649 5.53302 5.80659 6.03964 6.19247 6.23503 6.32103 6.45526 6.62333 6.76927 6.97008 7.14788 7.24927 7.48040 7.65550 8.08564 8.29762 8.57915 9.09889 10.59411 Molecular weight = 284.05amu Principal moments of inertia in cm(-1) A = 0.026901 B = 0.004843 C = 0.004527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.622289 B = 5779.815961 C = 6182.970183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.067 3.933 3 Si 0.919 3.081 4 H -0.275 1.275 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.530 4.530 8 H 0.076 0.924 9 C 0.227 3.773 10 H 0.071 0.929 11 C -0.039 4.039 12 Cl -0.225 7.225 13 O -0.295 6.295 14 C 0.504 3.496 15 N -0.510 5.510 16 C 0.115 3.885 17 C -0.087 4.087 18 C -0.101 4.101 19 C -0.160 4.160 20 C 0.112 3.888 21 F -0.147 7.147 22 C 0.000 4.000 23 N -0.595 5.595 24 H 0.424 0.576 25 H 0.274 0.726 26 H 0.136 0.864 27 H 0.070 0.930 28 H 0.134 0.866 29 H 0.134 0.866 30 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.215 -11.754 2.497 12.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.201 1.201 5 H -0.206 1.206 6 H -0.194 1.194 7 C -0.568 4.568 8 H 0.094 0.906 9 C 0.172 3.828 10 H 0.089 0.911 11 C -0.101 4.101 12 Cl -0.199 7.199 13 O -0.197 6.197 14 C 0.201 3.799 15 N -0.248 5.248 16 C -0.006 4.006 17 C -0.107 4.107 18 C -0.122 4.122 19 C -0.181 4.181 20 C 0.090 3.910 21 F -0.125 7.125 22 C -0.109 4.109 23 N -0.217 5.217 24 H 0.263 0.737 25 H 0.084 0.916 26 H 0.153 0.847 27 H 0.088 0.912 28 H 0.152 0.848 29 H 0.152 0.848 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 0.576 -10.945 2.384 11.216 hybrid contribution 1.607 0.158 -0.484 1.686 sum 2.183 -10.787 1.900 11.169 Atomic orbital electron populations 1.69820 1.05955 1.28227 1.47813 1.24950 0.95213 0.99695 0.93829 0.86134 0.79602 0.81183 0.78537 1.20104 1.20619 1.19420 1.20964 0.94305 0.87604 1.53925 0.90577 1.20719 0.86638 0.79819 0.95597 0.91142 1.25605 0.95660 0.87841 1.01042 1.98658 1.75411 1.46814 1.99061 1.86010 1.46025 1.17809 1.69886 1.21034 0.84773 0.83599 0.90455 1.71222 1.16581 1.16112 1.20868 1.18867 0.92167 0.90631 0.98923 1.20284 0.98378 0.93565 0.98460 1.20615 0.96491 0.94294 1.00795 1.20677 0.93670 1.00685 1.03051 1.16505 0.83406 0.87959 1.03155 1.91454 1.45726 1.83252 1.92105 1.18536 0.95504 0.91438 1.05433 1.42388 1.17483 1.10142 1.51674 0.73737 0.91629 0.84673 0.91176 0.84793 0.84799 0.84625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.83 11.29 55.43 0.63 -22.20 16 2 C 0.07 1.69 5.29 -17.82 -0.09 1.59 16 3 Si 0.92 19.52 29.54 -169.99 -5.02 14.50 16 4 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 5 H -0.28 -5.93 7.11 56.52 0.40 -5.52 16 6 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 7 C -0.53 -13.55 8.89 -34.44 -0.31 -13.86 16 8 H 0.08 1.93 7.81 -52.49 -0.41 1.52 16 9 C 0.23 5.53 2.28 -27.88 -0.06 5.47 16 10 H 0.07 1.90 7.24 -51.93 -0.38 1.52 16 11 C -0.04 -0.89 6.17 37.16 0.23 -0.66 16 12 Cl -0.23 -4.88 26.10 -51.86 -1.35 -6.24 16 13 O -0.29 -6.65 9.80 -17.53 -0.17 -6.82 16 14 C 0.50 10.40 7.93 -88.95 -0.70 9.70 16 15 N -0.51 -10.79 8.10 -12.25 -0.10 -10.89 16 16 C 0.11 2.09 7.22 -84.69 -0.61 1.48 16 17 C -0.09 -1.28 10.10 -39.22 -0.40 -1.68 16 18 C -0.10 -1.19 10.01 -39.62 -0.40 -1.58 16 19 C -0.16 -1.94 10.01 -39.44 -0.39 -2.33 16 20 C 0.11 1.63 7.31 -39.39 -0.29 1.35 16 21 F -0.15 -2.09 17.27 2.25 0.04 -2.05 16 22 C 0.00 -0.01 7.28 -83.79 -0.61 -0.62 16 23 N -0.59 -10.22 6.27 -11.86 -0.07 -10.30 16 24 H 0.42 5.99 8.96 -40.82 -0.37 5.62 16 25 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 26 H 0.14 3.33 5.95 -51.93 -0.31 3.02 16 27 H 0.07 1.54 8.14 -51.92 -0.42 1.12 16 28 H 0.13 1.81 8.06 -52.48 -0.42 1.39 16 29 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 30 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 282.77 15.07 4.26 4.26 Total: -1.00 -27.28 282.77 -7.72 -35.00 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -2.29 Total: 5.88 kcal Atomic # 6 Polarization: 2.49 SS G_CDS: -3.64 Total: -1.14 kcal Atomic # 7 Polarization: -43.85 SS G_CDS: 0.45 Total: -43.39 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.17 Total: -6.82 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.04 Total: -2.05 kcal Atomic # 14 Polarization: 19.52 SS G_CDS: -5.02 Total: 14.50 kcal Atomic # 17 Polarization: -4.88 SS G_CDS: -1.35 Total: -6.24 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -27.28 -7.72 -35.00 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233929949.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.388 kcal (2) G-P(sol) polarization free energy of solvation -27.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds