Wall clock time and date at job start Tue Mar 31 2020 05:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 120.00061 * 2 1 4 4 H 1.48498 * 109.47346 * 179.72784 * 3 2 1 5 5 H 1.48499 * 109.47472 * 299.73241 * 3 2 1 6 6 H 1.48501 * 109.46819 * 59.72860 * 3 2 1 7 7 C 1.37884 * 120.00085 * 179.73097 * 2 1 3 8 8 H 1.08001 * 119.99547 * 176.00848 * 7 2 1 9 9 C 1.50694 * 119.99655 * 356.00589 * 7 2 1 10 10 H 1.08995 * 109.47582 * 35.14416 * 9 7 2 11 11 C 1.53002 * 109.46950 * 155.14647 * 9 7 2 12 12 Cl 1.80303 * 109.47225 * 185.71385 * 11 9 7 13 13 O 1.42903 * 109.47236 * 275.13967 * 9 7 2 14 14 C 1.35995 * 117.00319 * 150.00239 * 13 9 7 15 15 C 1.40282 * 125.95736 * 180.02562 * 14 13 9 16 16 C 1.35281 * 107.87411 * 179.97438 * 15 14 13 17 17 C 1.50697 * 126.08522 * 180.02562 * 16 15 14 18 18 F 1.39904 * 109.46758 * 180.02562 * 17 16 15 19 19 F 1.39901 * 109.46938 * 299.99559 * 17 16 15 20 20 F 1.39888 * 109.47316 * 59.99922 * 17 16 15 21 21 N 1.34954 * 107.82452 * 0.02562 * 16 15 14 22 22 H 0.97007 * 125.98293 * 179.97438 * 21 16 15 23 23 N 1.31113 * 125.94982 * 359.69205 * 14 13 9 24 24 H 0.96997 * 120.00030 * 185.58017 * 1 2 3 25 25 H 1.09005 * 109.46560 * 305.70668 * 11 9 7 26 26 H 1.08995 * 109.47362 * 65.70832 * 11 9 7 27 27 H 1.07999 * 126.06320 * 359.97438 * 15 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0067 5 1 1.8954 2.3937 -1.2157 6 1 1.8854 2.3992 1.2092 7 6 2.0045 -1.1941 0.0056 8 1 3.0826 -1.1954 -0.0595 9 6 1.2538 -2.4971 0.1026 10 1 0.3103 -2.4139 -0.4367 11 6 2.0953 -3.6175 -0.5118 12 17 1.1324 -5.1414 -0.5483 13 8 0.9930 -2.7955 1.4756 14 6 -0.1317 -3.5094 1.7495 15 6 -0.5672 -3.9037 3.0234 16 6 -1.7219 -4.5923 2.8727 17 6 -2.5417 -5.2034 3.9796 18 9 -3.6652 -5.8340 3.4341 19 9 -1.7681 -6.1440 4.6682 20 9 -2.9527 -4.2004 4.8639 21 7 -2.0087 -4.6345 1.5547 22 1 -2.7798 -5.0644 1.1527 23 7 -1.0011 -3.9437 0.8694 24 1 -0.4850 -0.8360 0.0817 25 1 2.3796 -3.3429 -1.5276 26 1 2.9925 -3.7689 0.0883 27 1 -0.0690 -3.6947 3.9585 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234855035.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:21:03 Heat of formation + Delta-G solvation = -127.705653 kcal Electronic energy + Delta-G solvation = -20400.236049 eV Core-core repulsion = 16385.239675 eV Total energy + Delta-G solvation = -4014.996375 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 284.028 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -50.30810 -47.86967 -47.75792 -40.99082 -37.61580 -35.10040 -33.42001 -31.08053 -30.63664 -29.46795 -26.02020 -24.85073 -22.46473 -20.93445 -20.39409 -19.18991 -18.65227 -18.30078 -17.49981 -16.08548 -15.72425 -15.18959 -14.67157 -14.62627 -14.22808 -14.16109 -13.98296 -13.95729 -13.92986 -13.64050 -13.44089 -13.06816 -12.60588 -12.04311 -12.00548 -11.38693 -10.98574 -10.49849 -10.29202 -10.26510 -9.89521 -9.54979 -9.19967 -8.79727 -8.66407 -7.97087 -6.78641 -4.63408 1.63975 2.25148 2.89060 3.01087 3.22677 3.27983 3.32404 3.46048 3.50335 3.99679 4.19161 4.24704 4.37090 5.09168 5.21958 5.61144 5.72418 5.80490 6.01858 6.07734 6.48080 6.73810 7.25585 7.48758 7.88346 8.01071 8.38809 8.48941 9.18025 10.58720 Molecular weight = 284.03amu Principal moments of inertia in cm(-1) A = 0.020446 B = 0.005580 C = 0.004742 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.140470 B = 5017.155180 C = 5902.806212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.873 5.873 2 C 0.036 3.964 3 Si 1.082 2.918 4 H -0.284 1.284 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.597 4.597 8 H 0.067 0.933 9 C 0.180 3.820 10 H 0.061 0.939 11 C -0.030 4.030 12 Cl -0.212 7.212 13 O -0.292 6.292 14 C 0.280 3.720 15 C -0.205 4.205 16 C -0.012 4.012 17 C 0.544 3.456 18 F -0.179 7.179 19 F -0.166 7.166 20 F -0.164 7.164 21 N -0.449 5.449 22 H 0.441 0.559 23 N -0.285 5.285 24 H 0.278 0.722 25 H 0.096 0.904 26 H 0.084 0.916 27 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.363 -8.893 5.095 10.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.506 5.506 2 C -0.174 4.174 3 Si 0.908 3.092 4 H -0.209 1.209 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.633 4.633 8 H 0.085 0.915 9 C 0.127 3.873 10 H 0.079 0.921 11 C -0.093 4.093 12 Cl -0.186 7.186 13 O -0.195 6.195 14 C 0.076 3.924 15 C -0.237 4.237 16 C -0.141 4.141 17 C 0.487 3.513 18 F -0.161 7.161 19 F -0.147 7.147 20 F -0.146 7.146 21 N -0.162 5.162 22 H 0.286 0.714 23 N -0.127 5.127 24 H 0.090 0.910 25 H 0.115 0.885 26 H 0.103 0.897 27 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -3.623 -7.281 3.978 9.054 hybrid contribution -0.234 -2.145 0.813 2.306 sum -3.857 -9.427 4.791 11.256 Atomic orbital electron populations 1.70708 1.07099 1.32021 1.40782 1.26213 0.96288 1.03359 0.91537 0.83361 0.74537 0.73785 0.77487 1.20935 1.20787 1.20727 1.21941 0.95363 0.89774 1.56213 0.91511 1.20715 0.96874 0.91746 0.77953 0.92101 1.25190 0.96514 0.83705 1.03910 1.98675 1.77102 1.43513 1.99301 1.86965 1.33585 1.64684 1.34311 1.20840 0.89277 0.91724 0.90546 1.20630 0.97056 1.07131 0.98885 1.20445 0.99367 1.07589 0.86725 1.17294 0.77029 0.75984 0.80973 1.93186 1.54067 1.83142 1.85655 1.93251 1.74915 1.65832 1.80728 1.93258 1.90622 1.60586 1.70102 1.45710 1.22830 1.45699 1.01946 0.71372 1.77872 1.00116 1.17660 1.17048 0.91020 0.88520 0.89698 0.82395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.94 13.62 55.43 0.75 -24.18 15 2 C 0.04 0.97 5.46 -17.82 -0.10 0.87 15 3 Si 1.08 23.28 29.91 -169.99 -5.08 18.20 15 4 H -0.28 -5.74 7.11 56.52 0.40 -5.34 15 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 15 6 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 7 C -0.60 -15.55 8.69 -34.44 -0.30 -15.85 15 8 H 0.07 1.69 7.81 -52.49 -0.41 1.28 15 9 C 0.18 4.37 1.99 -27.89 -0.06 4.31 15 10 H 0.06 1.60 5.85 -51.93 -0.30 1.30 15 11 C -0.03 -0.62 6.31 37.16 0.23 -0.38 15 12 Cl -0.21 -4.13 26.18 -51.86 -1.36 -5.49 15 13 O -0.29 -7.07 9.84 -19.73 -0.19 -7.26 15 14 C 0.28 6.04 6.95 -17.09 -0.12 5.92 15 15 C -0.20 -3.70 10.73 -39.87 -0.43 -4.13 15 16 C -0.01 -0.18 6.47 -82.27 -0.53 -0.71 15 17 C 0.54 7.05 3.49 36.00 0.13 7.18 15 18 F -0.18 -2.12 16.98 2.25 0.04 -2.08 15 19 F -0.17 -2.13 17.30 2.25 0.04 -2.09 15 20 F -0.16 -2.18 17.30 2.25 0.04 -2.14 15 21 N -0.45 -7.24 7.23 33.47 0.24 -7.00 15 22 H 0.44 5.59 8.72 -182.61 -1.59 3.99 15 23 N -0.28 -5.81 9.69 30.56 0.30 -5.51 15 24 H 0.28 8.09 6.67 -40.82 -0.27 7.81 15 25 H 0.10 1.85 8.14 -51.93 -0.42 1.43 15 26 H 0.08 1.65 8.14 -51.93 -0.42 1.23 15 27 H 0.16 2.52 8.06 -52.49 -0.42 2.10 15 LS Contribution 272.85 15.07 4.11 4.11 Total: -1.00 -28.62 272.85 -4.93 -33.55 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -2.64 Total: 2.69 kcal Atomic # 6 Polarization: -1.62 SS G_CDS: -1.17 Total: -2.79 kcal Atomic # 7 Polarization: -37.98 SS G_CDS: 1.29 Total: -36.69 kcal Atomic # 8 Polarization: -7.07 SS G_CDS: -0.19 Total: -7.26 kcal Atomic # 9 Polarization: -6.43 SS G_CDS: 0.12 Total: -6.31 kcal Atomic # 14 Polarization: 23.28 SS G_CDS: -5.08 Total: 18.20 kcal Atomic # 17 Polarization: -4.13 SS G_CDS: -1.36 Total: -5.49 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -28.62 -4.93 -33.55 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234855035.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.157 kcal (2) G-P(sol) polarization free energy of solvation -28.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds