Wall clock time and date at job start Tue Mar 31 2020 05:27:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46897 * 110.99844 * 2 1 4 4 C 1.50700 * 109.47354 * 66.04708 * 3 2 1 5 5 H 1.08003 * 119.99828 * 0.02562 * 4 3 2 6 6 C 1.37876 * 120.00078 * 179.97438 * 4 3 2 7 7 N 1.31511 * 120.00209 * 0.02562 * 6 4 3 8 8 Si 1.86804 * 119.99940 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47161 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.46722 * 120.00394 * 8 6 4 11 11 H 1.48497 * 109.47264 * 240.00405 * 8 6 4 12 12 C 1.46897 * 111.00071 * 236.04575 * 2 1 3 13 13 C 1.50694 * 109.47615 * 199.62410 * 12 2 1 14 14 C 1.38178 * 120.42537 * 255.76087 * 13 12 2 15 15 N 1.31880 * 120.77273 * 179.72528 * 14 13 12 16 16 C 1.31896 * 121.74949 * 0.58186 * 15 14 13 17 17 C 1.38137 * 120.77871 * 359.68115 * 16 15 14 18 18 C 1.38741 * 120.42942 * 76.03029 * 13 12 2 19 19 Br 1.89108 * 120.79691 * 359.96194 * 18 13 12 20 20 H 1.09003 * 109.46799 * 54.94220 * 1 2 3 21 21 H 1.08991 * 109.47535 * 174.94061 * 1 2 3 22 22 H 1.09005 * 109.47113 * 294.94665 * 1 2 3 23 23 H 1.09005 * 109.46838 * 186.04793 * 3 2 1 24 24 H 1.09001 * 109.47366 * 306.04247 * 3 2 1 25 25 H 0.97000 * 120.00090 * 179.97438 * 7 6 4 26 26 H 1.09001 * 109.47390 * 319.62503 * 12 2 1 27 27 H 1.08999 * 109.47221 * 79.62045 * 12 2 1 28 28 H 1.07999 * 119.61274 * 0.02562 * 14 13 12 29 29 H 1.08002 * 119.61308 * 179.70471 * 16 15 14 30 30 H 1.08002 * 120.42600 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0276 3.3491 1.5289 7 7 2.7127 4.0016 0.6154 8 14 1.5826 4.1870 3.1381 9 1 0.8145 3.2446 3.9909 10 1 2.8241 4.5935 3.8442 11 1 0.7560 5.3885 2.8586 12 6 1.9954 -0.7660 -1.1375 13 6 3.4248 -1.1559 -0.8623 14 6 4.4637 -0.4922 -1.4864 15 7 5.7173 -0.8242 -1.2465 16 6 6.0301 -1.8015 -0.4178 17 6 5.0454 -2.5137 0.2390 18 6 3.7144 -2.1895 0.0167 19 35 2.3288 -3.1334 0.8915 20 1 -0.3633 0.5903 -0.8413 21 1 -0.3634 -1.0236 -0.0906 22 1 -0.3633 0.4335 0.9318 23 1 3.0797 1.3444 -0.1083 24 1 1.5611 1.9273 -0.8309 25 1 2.9873 4.9177 0.7773 26 1 1.3948 -1.6643 -1.2799 27 1 1.9528 -0.1540 -2.0385 28 1 4.2468 0.3109 -2.1751 29 1 7.0683 -2.0475 -0.2503 30 1 5.3079 -3.3125 0.9167 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001237382360.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:38 Heat of formation + Delta-G solvation = 23.098620 kcal Electronic energy + Delta-G solvation = -14857.309362 eV Core-core repulsion = 12312.114500 eV Total energy + Delta-G solvation = -2545.194862 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 284.022 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.25967 -38.25371 -34.91074 -34.18391 -32.79725 -30.95226 -29.44876 -27.89034 -25.80296 -24.29025 -23.52225 -21.72241 -18.56588 -17.86029 -17.67572 -16.75868 -16.41708 -16.12427 -15.35534 -15.11240 -14.77149 -14.12652 -14.00816 -13.96986 -13.26775 -13.07292 -12.75892 -12.64636 -12.59624 -12.34482 -12.28396 -11.89085 -11.26338 -11.11919 -10.61419 -10.50580 -10.21211 -10.02507 -8.99736 -8.19577 -6.28189 0.01127 0.06384 0.57932 1.38967 1.40133 1.53051 2.39792 2.66763 3.13686 3.41022 3.48180 3.74407 3.80842 4.00803 4.34797 4.38849 4.56168 4.61157 4.72933 4.76906 4.81141 5.03705 5.12313 5.21893 5.33733 5.59623 5.66450 6.06540 6.33382 6.60887 6.88218 6.90913 7.41080 8.91422 Molecular weight = 284.02amu Principal moments of inertia in cm(-1) A = 0.019351 B = 0.006864 C = 0.005978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.636427 B = 4077.992393 C = 4682.450838 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.533 5.533 3 C 0.211 3.789 4 C -0.518 4.518 5 H 0.062 0.938 6 C 0.002 3.998 7 N -0.933 5.933 8 Si 0.963 3.037 9 H -0.263 1.263 10 H -0.282 1.282 11 H -0.278 1.278 12 C 0.091 3.909 13 C -0.104 4.104 14 C 0.100 3.900 15 N -0.498 5.498 16 C 0.096 3.904 17 C -0.145 4.145 18 C -0.040 4.040 19 Br -0.019 7.019 20 H 0.012 0.988 21 H 0.080 0.920 22 H 0.057 0.943 23 H 0.004 0.996 24 H -0.037 1.037 25 H 0.263 0.737 26 H 0.101 0.899 27 H 0.041 0.959 28 H 0.153 0.847 29 H 0.197 0.803 30 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.286 -16.956 -1.457 17.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 N -0.257 5.257 3 C 0.085 3.915 4 C -0.557 4.557 5 H 0.080 0.920 6 C -0.196 4.196 7 N -0.573 5.573 8 Si 0.788 3.212 9 H -0.187 1.187 10 H -0.208 1.208 11 H -0.204 1.204 12 C -0.038 4.038 13 C -0.109 4.109 14 C -0.057 4.057 15 N -0.207 5.207 16 C -0.062 4.062 17 C -0.166 4.166 18 C -0.128 4.128 19 Br 0.067 6.933 20 H 0.030 0.970 21 H 0.098 0.902 22 H 0.076 0.924 23 H 0.022 0.978 24 H -0.019 1.019 25 H 0.071 0.929 26 H 0.119 0.881 27 H 0.059 0.941 28 H 0.170 0.830 29 H 0.214 0.786 30 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 1.639 -16.922 -1.151 17.040 hybrid contribution -0.703 1.185 0.048 1.379 sum 0.936 -15.736 -1.103 15.803 Atomic orbital electron populations 1.22182 0.86867 1.00877 1.00372 1.61983 1.08249 1.15097 1.40391 1.19389 0.93806 0.83538 0.94786 1.21490 1.34450 0.97296 1.02437 0.92007 1.25853 0.95186 0.98178 1.00391 1.70085 1.39485 1.11773 1.35998 0.85424 0.77977 0.78350 0.79435 1.18722 1.20757 1.20368 1.21046 0.91034 0.98933 0.92778 1.20818 0.97885 0.95248 0.96909 1.22753 0.87452 0.97493 0.98009 1.67667 1.21057 1.15381 1.16602 1.23392 1.01533 0.90079 0.91174 1.22459 0.90640 1.02297 1.01238 1.22291 0.94799 0.97828 0.97896 1.96673 1.48147 1.71612 1.76863 0.96965 0.90175 0.92372 0.97759 1.01913 0.92866 0.88122 0.94126 0.82966 0.78597 0.80954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.65 9.31 127.69 1.19 2.84 16 2 N -0.53 -22.18 4.59 -931.68 -4.28 -26.46 16 3 C 0.21 11.06 4.55 85.56 0.39 11.45 16 4 C -0.52 -29.33 8.58 25.60 0.22 -29.11 16 5 H 0.06 3.45 7.10 -2.91 -0.02 3.43 16 6 C 0.00 0.10 5.46 84.65 0.46 0.57 16 7 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 8 Si 0.96 44.78 29.54 68.60 2.03 46.80 16 9 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 10 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 12 C 0.09 3.13 4.47 85.56 0.38 3.51 16 13 C -0.10 -3.56 4.85 -19.76 -0.10 -3.66 16 14 C 0.10 3.53 10.12 84.67 0.86 4.39 16 15 N -0.50 -16.52 10.36 -195.89 -2.03 -18.55 16 16 C 0.10 2.49 11.18 84.66 0.95 3.43 16 17 C -0.14 -3.64 9.90 22.38 0.22 -3.42 16 18 C -0.04 -1.20 6.27 22.52 0.14 -1.06 16 19 Br -0.02 -0.51 32.26 -20.37 -0.66 -1.17 16 20 H 0.01 0.44 8.08 -2.39 -0.02 0.42 16 21 H 0.08 2.37 7.85 -2.39 -0.02 2.35 16 22 H 0.06 2.31 7.01 -2.38 -0.02 2.29 16 23 H 0.00 0.25 6.85 -2.38 -0.02 0.23 16 24 H -0.04 -2.09 8.07 -2.39 -0.02 -2.11 16 25 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 26 H 0.10 2.97 7.07 -2.39 -0.02 2.95 16 27 H 0.04 1.41 7.83 -2.39 -0.02 1.39 16 28 H 0.15 5.32 8.01 -2.91 -0.02 5.30 16 29 H 0.20 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.17 3.10 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -65.95 278.33 1.19 -64.76 By element: Atomic # 1 Polarization: 0.71 SS G_CDS: 1.13 Total: 1.84 kcal Atomic # 6 Polarization: -15.77 SS G_CDS: 4.71 Total: -11.06 kcal Atomic # 7 Polarization: -95.15 SS G_CDS: -6.02 Total: -101.18 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -0.66 Total: -1.17 kcal Total: -65.95 1.19 -64.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001237382360.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.860 kcal (2) G-P(sol) polarization free energy of solvation -65.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds