Wall clock time and date at job start Tue Mar 31 2020 05:37:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39697 * 120.08004 * 184.70165 * 3 2 1 5 5 C 1.38134 * 120.07500 * 179.97438 * 4 3 2 6 6 Cl 1.73599 * 119.87129 * 179.74333 * 5 4 3 7 7 C 1.38277 * 120.25641 * 0.02562 * 5 4 3 8 8 C 1.39409 * 120.16804 * 0.02562 * 7 5 4 9 9 C 1.48382 * 120.04378 * 180.02562 * 8 7 5 10 10 C 1.38901 * 119.60601 * 359.95049 * 9 8 7 11 11 C 1.40847 * 118.75778 * 180.02562 * 10 9 8 12 12 C 1.41529 * 120.98593 * 179.97438 * 11 10 9 13 13 H 1.07998 * 119.99944 * 330.87354 * 12 11 10 14 14 C 1.40046 * 120.00092 * 150.86704 * 12 11 10 15 15 N 1.30733 * 120.00178 * 161.62493 * 14 12 11 16 16 Si 1.86809 * 119.99823 * 341.63051 * 14 12 11 17 17 H 1.48500 * 109.47260 * 95.38959 * 16 14 12 18 18 H 1.48499 * 109.46757 * 215.39169 * 16 14 12 19 19 H 1.48497 * 109.46841 * 335.38453 * 16 14 12 20 20 C 1.41144 * 118.02810 * 359.97438 * 11 10 9 21 21 C 1.37737 * 119.06975 * 0.02562 * 20 11 10 22 22 N 1.31925 * 121.15831 * 359.71981 * 21 20 11 23 23 C 1.39116 * 119.91796 * 359.97121 * 8 7 5 24 24 H 1.07998 * 119.96706 * 0.02562 * 4 3 2 25 25 H 1.08000 * 119.91328 * 179.97438 * 7 5 4 26 26 H 1.07992 * 120.62034 * 0.02562 * 10 9 8 27 27 H 0.97005 * 119.99957 * 180.02562 * 15 14 12 28 28 H 1.07996 * 120.46421 * 179.97438 * 20 11 10 29 29 H 1.08002 * 119.42171 * 179.97438 * 21 20 11 30 30 H 1.08000 * 120.12518 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2676 1.2057 0.0991 5 6 4.6490 1.2062 0.0996 6 17 5.5131 2.7073 0.2163 7 6 5.3461 0.0160 0.0017 8 6 4.6585 -1.1925 -0.0987 9 6 5.4094 -2.4680 -0.2031 10 6 6.7983 -2.4489 -0.2010 11 6 7.4930 -3.6700 -0.3015 12 6 8.9078 -3.7053 -0.3044 13 1 9.4681 -2.8674 -0.6922 14 6 9.5814 -4.8266 0.1958 15 7 10.8333 -5.0318 -0.1198 16 14 8.6907 -6.0293 1.3139 17 1 8.1627 -7.1581 0.5062 18 1 9.6362 -6.5500 2.3338 19 1 7.5655 -5.3357 1.9905 20 6 6.7363 -4.8574 -0.3991 21 6 5.3613 -4.7772 -0.3930 22 7 4.7458 -3.6147 -0.2924 23 6 3.2674 -1.2012 -0.0999 24 1 2.7280 2.1380 0.1762 25 1 6.4261 0.0229 0.0022 26 1 7.3354 -1.5152 -0.1238 27 1 11.2997 -5.8087 0.2264 28 1 7.2285 -5.8154 -0.4784 29 1 4.7767 -5.6822 -0.4679 30 1 2.7313 -2.1355 -0.1780 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242567308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:32 Heat of formation + Delta-G solvation = 66.521188 kcal Electronic energy + Delta-G solvation = -17928.373049 eV Core-core repulsion = 14906.797737 eV Total energy + Delta-G solvation = -3021.575312 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.041 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.83629 -38.45324 -36.82175 -36.23330 -34.25743 -32.48023 -31.69312 -30.93138 -28.87124 -26.20378 -24.33669 -23.32303 -21.87760 -20.81810 -18.98321 -17.34470 -16.59223 -15.99766 -15.77933 -15.22407 -14.56454 -14.35083 -14.31497 -14.28738 -13.30013 -13.26175 -13.14098 -13.04377 -12.89155 -12.79672 -11.86507 -11.70960 -11.66312 -11.37238 -11.16294 -11.00702 -10.92913 -10.78471 -9.99601 -9.58185 -9.36335 -8.87686 -8.47798 -8.35872 -7.69590 -7.22130 -4.88270 0.57351 0.91784 1.93880 2.20829 2.41454 2.59758 2.92167 2.99261 3.06071 3.15749 3.73952 3.75461 3.77823 4.40748 4.54327 4.87356 4.95619 5.20614 5.21036 5.32729 5.48037 5.71733 5.98155 6.04965 6.12152 6.25857 6.36681 6.52033 6.55709 6.73083 6.91203 7.00726 7.36747 7.45752 7.69537 8.04191 8.24687 8.47786 9.08553 9.78509 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.004543 C = 0.003798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.478220 B = 6161.933789 C = 7370.556498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C 0.265 3.735 3 C -0.026 4.026 4 C -0.073 4.073 5 C -0.038 4.038 6 Cl -0.064 7.064 7 C -0.071 4.071 8 C 0.000 4.000 9 C 0.153 3.847 10 C -0.230 4.230 11 C 0.107 3.893 12 C -0.434 4.434 13 H 0.097 0.903 14 C 0.087 3.913 15 N -0.790 5.790 16 Si 0.913 3.087 17 H -0.266 1.266 18 H -0.287 1.287 19 H -0.245 1.245 20 C -0.282 4.282 21 C 0.123 3.877 22 N -0.565 5.565 23 C -0.037 4.037 24 H 0.139 0.861 25 H 0.149 0.851 26 H 0.114 0.886 27 H 0.290 0.710 28 H 0.110 0.890 29 H 0.130 0.870 30 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.648 7.731 1.405 10.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.096 5.096 2 C -0.051 4.051 3 C -0.030 4.030 4 C -0.094 4.094 5 C -0.064 4.064 6 Cl -0.035 7.035 7 C -0.091 4.091 8 C -0.002 4.002 9 C 0.022 3.978 10 C -0.253 4.253 11 C 0.099 3.901 12 C -0.464 4.464 13 H 0.115 0.885 14 C -0.136 4.136 15 N -0.413 5.413 16 Si 0.739 3.261 17 H -0.192 1.192 18 H -0.214 1.214 19 H -0.168 1.168 20 C -0.304 4.304 21 C -0.031 4.031 22 N -0.281 5.281 23 C -0.058 4.058 24 H 0.157 0.843 25 H 0.166 0.834 26 H 0.132 0.868 27 H 0.101 0.899 28 H 0.128 0.872 29 H 0.148 0.852 30 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.984 7.776 1.413 11.965 hybrid contribution 1.440 -0.582 0.417 1.608 sum -7.545 7.194 1.830 10.584 Atomic orbital electron populations 1.81233 1.11924 1.07365 1.09062 1.25514 0.92405 0.93645 0.93520 1.15725 0.84439 0.94266 1.08548 1.20921 0.92098 0.97511 0.98872 1.20467 0.91768 0.87624 1.06561 1.98379 1.76707 1.31730 1.96658 1.21477 1.01659 0.89639 0.96317 1.18558 0.92030 0.91870 0.97700 1.18950 0.90022 0.90089 0.98736 1.21899 0.92914 0.98623 1.11884 1.17844 0.93820 0.90763 0.87652 1.19552 0.89705 1.02800 1.34343 0.88546 1.26220 0.94880 0.97308 0.95155 1.69637 1.11218 1.26404 1.34075 0.86261 0.79944 0.80008 0.79872 1.19204 1.21384 1.16801 1.21990 0.94956 0.98743 1.14741 1.21880 0.91895 0.94362 0.94962 1.67280 1.40263 0.97507 1.23000 1.21498 0.93685 0.97102 0.93487 0.84268 0.83381 0.86761 0.89903 0.87239 0.85226 0.83163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.16 18.54 41.84 0.78 -5.38 16 2 C 0.26 3.41 15.32 -22.47 -0.34 3.07 16 3 C -0.03 -0.32 5.73 -106.99 -0.61 -0.93 16 4 C -0.07 -0.78 9.52 -39.08 -0.37 -1.16 16 5 C -0.04 -0.44 6.31 -39.61 -0.25 -0.69 16 6 Cl -0.06 -0.69 28.94 -51.86 -1.50 -2.19 16 7 C -0.07 -0.96 9.19 -39.13 -0.36 -1.31 16 8 C 0.00 0.00 5.87 -104.96 -0.62 -0.62 16 9 C 0.15 2.95 6.73 -83.03 -0.56 2.40 16 10 C -0.23 -4.75 9.25 -38.35 -0.35 -5.11 16 11 C 0.11 2.46 5.13 -106.55 -0.55 1.91 16 12 C -0.43 -10.62 9.63 -37.65 -0.36 -10.98 16 13 H 0.10 2.45 8.06 -52.49 -0.42 2.03 16 14 C 0.09 2.06 5.42 -17.34 -0.09 1.97 16 15 N -0.79 -19.26 13.92 55.55 0.77 -18.49 16 16 Si 0.91 18.97 24.54 -169.99 -4.17 14.80 16 17 H -0.27 -5.32 6.70 56.52 0.38 -4.94 16 18 H -0.29 -5.77 7.11 56.52 0.40 -5.37 16 19 H -0.24 -5.27 6.85 56.52 0.39 -4.88 16 20 C -0.28 -6.16 7.29 -38.66 -0.28 -6.44 16 21 C 0.12 2.48 11.15 -17.69 -0.20 2.28 16 22 N -0.57 -11.38 9.39 -9.94 -0.09 -11.47 16 23 C -0.04 -0.51 9.27 -38.82 -0.36 -0.87 16 24 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 25 H 0.15 1.94 6.16 -52.49 -0.32 1.62 16 26 H 0.11 2.12 6.17 -52.49 -0.32 1.80 16 27 H 0.29 6.36 8.29 -40.82 -0.34 6.03 16 28 H 0.11 2.35 4.76 -52.49 -0.25 2.10 16 29 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 30 H 0.15 2.15 7.52 -52.49 -0.39 1.76 16 LS Contribution 288.87 15.07 4.35 4.35 Total: -1.00 -25.26 288.87 -6.90 -32.16 By element: Atomic # 1 Polarization: 4.43 SS G_CDS: -1.73 Total: 2.70 kcal Atomic # 6 Polarization: -11.17 SS G_CDS: -5.31 Total: -16.48 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 1.46 Total: -35.34 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -4.17 Total: 14.80 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.50 Total: -2.19 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -25.26 -6.90 -32.16 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242567308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.685 kcal (2) G-P(sol) polarization free energy of solvation -25.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds