Wall clock time and date at job start Tue Mar 31 2020 05:37:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39758 * 120.07670 * 313.15413 * 3 2 1 5 5 C 1.38193 * 120.12818 * 179.97438 * 4 3 2 6 6 Cl 1.73599 * 119.85981 * 180.02562 * 5 4 3 7 7 C 1.38195 * 120.28062 * 0.02562 * 5 4 3 8 8 C 1.39672 * 120.14268 * 359.97438 * 7 5 4 9 9 C 1.47984 * 120.06365 * 179.97438 * 8 7 5 10 10 C 1.39889 * 119.45159 * 4.97630 * 9 8 7 11 11 C 1.36609 * 119.47304 * 180.02562 * 10 9 8 12 12 C 1.41307 * 118.40604 * 0.02562 * 11 10 9 13 13 C 1.41054 * 120.54744 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00161 * 203.67719 * 13 12 11 15 15 C 1.40027 * 120.00448 * 23.68231 * 13 12 11 16 16 N 1.30788 * 119.99687 * 17.63077 * 15 13 12 17 17 Si 1.86802 * 120.00253 * 197.62881 * 15 13 12 18 18 H 1.48499 * 109.46954 * 89.99606 * 17 15 13 19 19 H 1.48495 * 109.47137 * 209.99958 * 17 15 13 20 20 H 1.48501 * 109.47004 * 330.00302 * 17 15 13 21 21 C 1.40939 * 118.89589 * 359.97438 * 12 11 10 22 22 N 1.31275 * 120.40004 * 0.02562 * 21 12 11 23 23 C 1.39351 * 120.07072 * 133.44037 * 3 2 1 24 24 H 1.08002 * 119.93596 * 0.02562 * 4 3 2 25 25 H 1.07996 * 119.93085 * 179.97438 * 7 5 4 26 26 H 1.08005 * 120.26328 * 0.04746 * 10 9 8 27 27 H 1.07993 * 120.79556 * 180.02562 * 11 10 9 28 28 H 0.97005 * 119.99786 * 180.02562 * 16 15 13 29 29 H 1.07999 * 119.80529 * 180.27545 * 21 12 11 30 30 H 1.07999 * 120.13942 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2687 -0.8262 0.8823 5 6 4.6506 -0.8269 0.8828 6 17 5.5141 -1.8572 1.9812 7 6 5.3482 -0.0107 0.0127 8 6 4.6595 0.8202 -0.8740 9 6 5.4082 1.6939 -1.8046 10 6 6.8030 1.6034 -1.8611 11 6 7.4947 2.4100 -2.7197 12 6 6.7671 3.3145 -3.5256 13 6 7.4355 4.1680 -4.4281 14 1 6.9679 5.0870 -4.7493 15 6 8.7052 3.8237 -4.9078 16 7 9.1282 2.5899 -4.8112 17 14 9.7946 5.1266 -5.6857 18 1 10.6350 5.7592 -4.6375 19 1 10.6687 4.4956 -6.7070 20 1 8.9462 6.1606 -6.3307 21 6 5.3626 3.3488 -3.4133 22 7 4.7438 2.5528 -2.5727 23 6 3.2658 0.8302 -0.8756 24 1 2.7292 -1.4666 1.5644 25 1 6.4281 -0.0154 0.0182 26 1 7.3289 0.9011 -1.2312 27 1 8.5716 2.3577 -2.7810 28 1 10.0080 2.3515 -5.1432 29 1 4.7917 4.0313 -4.0254 30 1 2.7290 1.4747 -1.5559 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242568034.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:08 Heat of formation + Delta-G solvation = 62.009302 kcal Electronic energy + Delta-G solvation = -17776.880599 eV Core-core repulsion = 14755.109637 eV Total energy + Delta-G solvation = -3021.770962 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.041 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.54814 -38.23528 -36.67448 -36.07870 -34.48269 -32.08916 -31.23336 -30.52465 -29.33982 -25.83319 -23.99395 -23.06825 -21.49792 -20.96252 -18.53225 -17.69942 -16.32061 -15.88741 -15.56209 -15.10230 -14.70716 -14.14045 -14.10220 -13.98935 -13.11093 -13.06285 -12.97889 -12.74039 -12.60808 -12.11647 -11.92974 -11.64790 -11.54323 -11.39488 -11.17899 -11.13949 -10.90002 -10.76220 -10.10238 -9.71884 -9.06400 -8.68278 -8.54152 -8.30479 -7.58121 -7.18347 -4.74918 0.80451 1.17887 2.09918 2.34886 2.75136 2.79375 2.84440 2.86373 2.88553 3.21095 3.60445 3.93055 3.94852 4.39283 4.87083 5.13537 5.20679 5.43308 5.45106 5.59063 5.79655 5.93066 6.25029 6.26092 6.31790 6.47606 6.62985 6.71803 6.82037 6.84267 7.00536 7.45580 7.52046 7.57535 7.68151 8.12694 8.31081 8.40971 9.33536 9.67949 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.023041 B = 0.003818 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.908180 B = 7330.963409 C = 8452.755618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.427 5.427 2 C 0.267 3.733 3 C -0.018 4.018 4 C -0.099 4.099 5 C -0.026 4.026 6 Cl -0.073 7.073 7 C -0.101 4.101 8 C 0.041 3.959 9 C -0.024 4.024 10 C -0.114 4.114 11 C -0.146 4.146 12 C 0.071 3.929 13 C -0.423 4.423 14 H 0.090 0.910 15 C 0.071 3.929 16 N -0.767 5.767 17 Si 0.918 3.082 18 H -0.263 1.263 19 H -0.274 1.274 20 H -0.257 1.257 21 C -0.013 4.013 22 N -0.443 5.443 23 C -0.062 4.062 24 H 0.134 0.866 25 H 0.140 0.860 26 H 0.103 0.897 27 H 0.128 0.872 28 H 0.290 0.710 29 H 0.132 0.868 30 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.083 -3.871 6.300 7.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.048 4.048 3 C -0.022 4.022 4 C -0.121 4.121 5 C -0.052 4.052 6 Cl -0.045 7.045 7 C -0.122 4.122 8 C 0.040 3.960 9 C -0.157 4.157 10 C -0.134 4.134 11 C -0.171 4.171 12 C 0.065 3.935 13 C -0.451 4.451 14 H 0.108 0.892 15 C -0.152 4.152 16 N -0.389 5.389 17 Si 0.742 3.258 18 H -0.188 1.188 19 H -0.199 1.199 20 H -0.181 1.181 21 C -0.179 4.179 22 N -0.150 5.150 23 C -0.083 4.083 24 H 0.152 0.848 25 H 0.157 0.843 26 H 0.121 0.879 27 H 0.146 0.854 28 H 0.101 0.899 29 H 0.149 0.851 30 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -2.455 -4.128 6.407 8.007 hybrid contribution 2.121 0.300 -0.405 2.180 sum -0.333 -3.828 6.002 7.127 Atomic orbital electron populations 1.81205 1.12024 1.08571 1.08479 1.25615 0.92523 0.93333 0.93333 1.15718 0.84170 1.01536 1.00736 1.20747 0.91989 0.99878 0.99497 1.20414 0.91693 0.97176 0.95961 1.98359 1.76955 1.66648 1.62505 1.21302 1.00963 0.95379 0.94538 1.18449 0.91676 0.93022 0.92894 1.18481 0.89897 1.03017 1.04263 1.21275 0.93949 0.99228 0.98973 1.21335 1.00277 0.99034 0.96410 1.18654 0.92482 0.91406 0.90908 1.19807 0.99634 1.05524 1.20120 0.89151 1.26151 0.98279 0.96076 0.94653 1.69770 1.18948 1.17890 1.32323 0.86114 0.79610 0.80795 0.79323 1.18787 1.19851 1.18070 1.22450 0.91601 1.02334 1.01550 1.66854 1.41266 1.03279 1.03646 1.21427 0.93819 0.96460 0.96610 0.84803 0.84262 0.87861 0.85388 0.89861 0.85051 0.83721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.86 18.54 41.83 0.78 -6.08 16 2 C 0.27 3.88 15.32 -22.48 -0.34 3.53 16 3 C -0.02 -0.25 5.73 -106.99 -0.61 -0.86 16 4 C -0.10 -1.25 9.53 -39.03 -0.37 -1.62 16 5 C -0.03 -0.34 6.31 -39.61 -0.25 -0.59 16 6 Cl -0.07 -0.86 28.94 -51.86 -1.50 -2.36 16 7 C -0.10 -1.50 9.18 -39.06 -0.36 -1.86 16 8 C 0.04 0.70 5.87 -104.95 -0.62 0.09 16 9 C -0.02 -0.50 6.73 -82.75 -0.56 -1.05 16 10 C -0.11 -2.36 9.37 -39.55 -0.37 -2.73 16 11 C -0.15 -3.33 8.74 -39.00 -0.34 -3.68 16 12 C 0.07 1.66 5.59 -106.64 -0.60 1.06 16 13 C -0.42 -9.64 9.06 -37.84 -0.34 -9.99 16 14 H 0.09 1.94 7.91 -52.49 -0.41 1.52 16 15 C 0.07 1.52 5.17 -17.33 -0.09 1.43 16 16 N -0.77 -17.13 10.92 55.55 0.61 -16.53 16 17 Si 0.92 16.02 29.60 -169.99 -5.03 10.99 16 18 H -0.26 -4.57 7.11 56.52 0.40 -4.17 16 19 H -0.27 -4.71 7.11 56.52 0.40 -4.31 16 20 H -0.26 -4.45 7.11 56.52 0.40 -4.04 16 21 C -0.01 -0.28 10.97 -16.77 -0.18 -0.47 16 22 N -0.44 -9.75 9.39 -9.10 -0.09 -9.83 16 23 C -0.06 -0.98 9.27 -38.75 -0.36 -1.34 16 24 H 0.13 1.40 8.06 -52.49 -0.42 0.97 16 25 H 0.14 1.94 6.16 -52.49 -0.32 1.62 16 26 H 0.10 1.83 6.17 -52.48 -0.32 1.51 16 27 H 0.13 2.96 6.19 -52.49 -0.32 2.64 16 28 H 0.29 5.82 8.30 -40.82 -0.34 5.48 16 29 H 0.13 2.71 8.06 -52.49 -0.42 2.28 16 30 H 0.15 2.38 7.52 -52.49 -0.39 1.99 16 LS Contribution 293.92 15.07 4.43 4.43 Total: -1.00 -23.99 293.92 -7.96 -31.95 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -1.76 Total: 5.49 kcal Atomic # 6 Polarization: -12.67 SS G_CDS: -5.39 Total: -18.06 kcal Atomic # 7 Polarization: -33.73 SS G_CDS: 1.30 Total: -32.44 kcal Atomic # 14 Polarization: 16.02 SS G_CDS: -5.03 Total: 10.99 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.50 Total: -2.36 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -23.99 -7.96 -31.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242568034.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.964 kcal (2) G-P(sol) polarization free energy of solvation -23.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds