Wall clock time and date at job start Tue Mar 31 2020 05:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43200 * 179.97438 * 2 1 4 4 C 1.39758 * 120.07670 * 313.15413 * 3 2 1 5 5 C 1.38193 * 120.12818 * 179.97438 * 4 3 2 6 6 Cl 1.73599 * 119.85981 * 180.02562 * 5 4 3 7 7 C 1.38195 * 120.28062 * 0.02562 * 5 4 3 8 8 C 1.39672 * 120.14268 * 359.97438 * 7 5 4 9 9 C 1.47984 * 120.06365 * 179.97438 * 8 7 5 10 10 C 1.39889 * 119.45159 * 4.97630 * 9 8 7 11 11 C 1.36609 * 119.47304 * 180.02562 * 10 9 8 12 12 C 1.41307 * 118.40604 * 0.02562 * 11 10 9 13 13 C 1.41054 * 120.54744 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00161 * 203.67719 * 13 12 11 15 15 C 1.40027 * 120.00448 * 23.68231 * 13 12 11 16 16 N 1.30788 * 119.99687 * 17.63077 * 15 13 12 17 17 Si 1.86802 * 120.00253 * 197.62881 * 15 13 12 18 18 H 1.48499 * 109.46954 * 89.99606 * 17 15 13 19 19 H 1.48495 * 109.47137 * 209.99958 * 17 15 13 20 20 H 1.48501 * 109.47004 * 330.00302 * 17 15 13 21 21 C 1.40939 * 118.89589 * 359.97438 * 12 11 10 22 22 N 1.31275 * 120.40004 * 0.02562 * 21 12 11 23 23 C 1.39351 * 120.07072 * 133.44037 * 3 2 1 24 24 H 1.08002 * 119.93596 * 0.02562 * 4 3 2 25 25 H 1.07996 * 119.93085 * 179.97438 * 7 5 4 26 26 H 1.08005 * 120.26328 * 0.04746 * 10 9 8 27 27 H 1.07993 * 120.79556 * 180.02562 * 11 10 9 28 28 H 0.97005 * 119.99786 * 180.02562 * 16 15 13 29 29 H 1.07999 * 119.80529 * 180.27545 * 21 12 11 30 30 H 1.07999 * 120.13942 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2687 -0.8262 0.8823 5 6 4.6506 -0.8269 0.8828 6 17 5.5141 -1.8572 1.9812 7 6 5.3482 -0.0107 0.0127 8 6 4.6595 0.8202 -0.8740 9 6 5.4082 1.6939 -1.8046 10 6 6.8030 1.6034 -1.8611 11 6 7.4947 2.4100 -2.7197 12 6 6.7671 3.3145 -3.5256 13 6 7.4355 4.1680 -4.4281 14 1 6.9679 5.0870 -4.7493 15 6 8.7052 3.8237 -4.9078 16 7 9.1282 2.5899 -4.8112 17 14 9.7946 5.1266 -5.6857 18 1 10.6350 5.7592 -4.6375 19 1 10.6687 4.4956 -6.7070 20 1 8.9462 6.1606 -6.3307 21 6 5.3626 3.3488 -3.4133 22 7 4.7438 2.5528 -2.5727 23 6 3.2658 0.8302 -0.8756 24 1 2.7292 -1.4666 1.5644 25 1 6.4281 -0.0154 0.0182 26 1 7.3289 0.9011 -1.2312 27 1 8.5716 2.3577 -2.7810 28 1 10.0080 2.3515 -5.1432 29 1 4.7917 4.0313 -4.0254 30 1 2.7290 1.4747 -1.5559 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242568034.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:07 Heat of formation + Delta-G solvation = 52.629130 kcal Electronic energy + Delta-G solvation = -17777.287354 eV Core-core repulsion = 14755.109637 eV Total energy + Delta-G solvation = -3022.177717 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.041 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.90555 -39.73485 -37.79358 -37.24463 -36.06874 -33.49079 -32.76181 -31.88137 -30.84470 -27.40207 -25.27024 -24.52325 -23.09871 -22.38090 -19.83631 -19.34934 -17.62590 -17.29824 -16.94295 -16.50441 -16.08111 -15.55403 -15.46341 -15.31339 -14.50728 -14.44158 -14.29300 -13.97207 -13.94007 -13.61137 -13.53283 -13.22592 -12.87850 -12.69391 -12.47194 -12.35262 -12.20881 -11.92016 -11.69634 -11.26859 -10.43237 -10.23840 -9.98785 -9.82874 -9.14239 -8.76937 -6.45034 -0.39219 -0.07030 0.85389 1.02910 1.10113 1.41114 1.50130 1.54531 1.57069 1.89214 2.16129 2.58842 2.75653 2.89375 3.58534 3.74275 3.93173 4.01148 4.20244 4.22871 4.48678 4.54464 4.77381 4.82095 4.97643 5.05636 5.09785 5.16366 5.31284 5.46220 5.53480 5.81650 5.90776 5.99871 6.34877 6.44655 6.65706 6.72880 7.64569 8.12900 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.023041 B = 0.003818 C = 0.003312 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.908180 B = 7330.963409 C = 8452.755618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C 0.285 3.715 3 C -0.014 4.014 4 C -0.069 4.069 5 C -0.027 4.027 6 Cl -0.052 7.052 7 C -0.086 4.086 8 C 0.012 3.988 9 C -0.019 4.019 10 C -0.119 4.119 11 C -0.163 4.163 12 C 0.045 3.955 13 C -0.460 4.460 14 H 0.091 0.909 15 C 0.037 3.963 16 N -0.801 5.801 17 Si 0.988 3.012 18 H -0.260 1.260 19 H -0.267 1.267 20 H -0.255 1.255 21 C -0.035 4.035 22 N -0.456 5.456 23 C -0.060 4.060 24 H 0.165 0.835 25 H 0.149 0.851 26 H 0.133 0.867 27 H 0.120 0.880 28 H 0.297 0.703 29 H 0.139 0.861 30 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.094 -5.228 7.984 9.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.127 5.127 2 C -0.030 4.030 3 C -0.018 4.018 4 C -0.091 4.091 5 C -0.054 4.054 6 Cl -0.023 7.023 7 C -0.107 4.107 8 C 0.011 3.989 9 C -0.153 4.153 10 C -0.139 4.139 11 C -0.188 4.188 12 C 0.040 3.960 13 C -0.488 4.488 14 H 0.110 0.890 15 C -0.182 4.182 16 N -0.424 5.424 17 Si 0.808 3.192 18 H -0.185 1.185 19 H -0.192 1.192 20 H -0.179 1.179 21 C -0.199 4.199 22 N -0.164 5.164 23 C -0.081 4.081 24 H 0.183 0.817 25 H 0.166 0.834 26 H 0.151 0.849 27 H 0.137 0.863 28 H 0.108 0.892 29 H 0.156 0.844 30 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.483 -5.478 8.085 10.077 hybrid contribution 1.960 0.478 -0.669 2.126 sum -0.523 -5.000 7.416 8.959 Atomic orbital electron populations 1.81238 1.12759 1.09410 1.09311 1.25533 0.92335 0.92569 0.92571 1.15579 0.83738 1.01625 1.00809 1.21093 0.91846 0.98109 0.98007 1.20409 0.91994 0.97063 0.95910 1.98379 1.76567 1.65777 1.61535 1.21384 1.01481 0.94261 0.93554 1.18296 0.92077 0.94453 0.94057 1.19060 0.90403 1.02263 1.03584 1.21571 0.94263 0.99249 0.98809 1.21394 1.00066 0.99983 0.97325 1.18926 0.93056 0.92275 0.91755 1.20010 1.01146 1.06064 1.21540 0.89047 1.26906 0.98834 0.97796 0.94645 1.69798 1.19697 1.19371 1.33558 0.85086 0.77625 0.78065 0.78422 1.18471 1.19164 1.17882 1.22613 0.91650 1.03192 1.02456 1.66912 1.41522 1.03781 1.04140 1.21317 0.93448 0.96587 0.96781 0.81716 0.83387 0.84943 0.86259 0.89154 0.84394 0.84912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -13.65 18.54 19.00 0.35 -13.30 16 2 C 0.28 7.60 15.32 88.33 1.35 8.95 16 3 C -0.01 -0.34 5.73 -21.40 -0.12 -0.47 16 4 C -0.07 -1.44 9.53 22.63 0.22 -1.23 16 5 C -0.03 -0.61 6.31 22.25 0.14 -0.47 16 6 Cl -0.05 -1.01 28.94 -2.72 -0.08 -1.09 16 7 C -0.09 -2.32 9.18 22.61 0.21 -2.11 16 8 C 0.01 0.41 5.87 -20.07 -0.12 0.29 16 9 C -0.02 -0.77 6.73 41.95 0.28 -0.49 16 10 C -0.12 -4.93 9.37 22.29 0.21 -4.72 16 11 C -0.16 -7.66 8.74 22.64 0.20 -7.47 16 12 C 0.04 2.19 5.59 -21.17 -0.12 2.07 16 13 C -0.46 -21.91 9.06 23.39 0.21 -21.70 16 14 H 0.09 4.13 7.91 -2.91 -0.02 4.10 16 15 C 0.04 1.64 5.17 85.28 0.44 2.08 16 16 N -0.80 -36.80 10.92 21.84 0.24 -36.57 16 17 Si 0.99 33.24 29.60 68.60 2.03 35.27 16 18 H -0.26 -8.54 7.11 99.48 0.71 -7.84 16 19 H -0.27 -8.60 7.11 99.48 0.71 -7.89 16 20 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 21 C -0.03 -1.62 10.97 85.44 0.94 -0.68 16 22 N -0.46 -20.52 9.39 -182.70 -1.72 -22.24 16 23 C -0.06 -1.81 9.27 22.81 0.21 -1.60 16 24 H 0.17 2.53 8.06 -2.91 -0.02 2.51 16 25 H 0.15 3.69 6.16 -2.91 -0.02 3.67 16 26 H 0.13 4.53 6.17 -2.91 -0.02 4.51 16 27 H 0.12 5.74 6.19 -2.91 -0.02 5.72 16 28 H 0.30 12.18 8.30 -92.70 -0.77 11.41 16 29 H 0.14 6.02 8.06 -2.91 -0.02 5.99 16 30 H 0.13 4.35 7.52 -2.91 -0.02 4.32 16 Total: -1.00 -52.72 293.92 6.08 -46.64 By element: Atomic # 1 Polarization: 17.62 SS G_CDS: 1.21 Total: 18.82 kcal Atomic # 6 Polarization: -31.59 SS G_CDS: 4.05 Total: -27.54 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -1.12 Total: -72.11 kcal Atomic # 14 Polarization: 33.24 SS G_CDS: 2.03 Total: 35.27 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal Total: -52.72 6.08 -46.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242568034.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.267 kcal (2) G-P(sol) polarization free energy of solvation -52.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.638 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds