Wall clock time and date at job start Tue Mar 31 2020 05:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.39766 * 120.07058 * 26.69796 * 3 2 1 5 5 C 1.38199 * 120.14072 * 180.02562 * 4 3 2 6 6 Cl 1.73609 * 119.85771 * 179.97438 * 5 4 3 7 7 C 1.38182 * 120.28621 * 359.69558 * 5 4 3 8 8 C 1.39731 * 120.13629 * 0.56027 * 7 5 4 9 9 C 1.47841 * 120.06924 * 179.74251 * 8 7 5 10 10 N 1.32569 * 119.99200 * 136.03293 * 9 8 7 11 11 C 1.31744 * 121.72507 * 179.67909 * 10 9 8 12 12 C 1.38869 * 121.50134 * 0.63190 * 11 10 9 13 13 C 1.36887 * 119.79476 * 359.40298 * 12 11 10 14 14 C 1.41126 * 118.39523 * 0.27080 * 13 12 11 15 15 C 1.40890 * 120.71829 * 180.02562 * 14 13 12 16 16 H 1.07992 * 120.00601 * 152.85704 * 15 14 13 17 17 C 1.40081 * 119.99901 * 332.85455 * 15 14 13 18 18 N 1.30776 * 119.99625 * 345.60223 * 17 15 14 19 19 Si 1.86798 * 120.00179 * 165.60248 * 17 15 14 20 20 H 1.48502 * 109.46842 * 59.99791 * 19 17 15 21 21 H 1.48493 * 109.47250 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.46730 * 300.00183 * 19 17 15 23 23 C 1.39323 * 120.07019 * 206.71865 * 3 2 1 24 24 H 1.08007 * 119.93170 * 0.02562 * 4 3 2 25 25 H 1.07999 * 119.92853 * 180.27446 * 7 5 4 26 26 H 1.08003 * 119.24839 * 180.31531 * 11 10 9 27 27 H 1.07993 * 120.09912 * 179.67121 * 12 11 10 28 28 H 1.08001 * 120.80298 * 180.30111 * 13 12 11 29 29 H 0.97002 * 119.99625 * 180.02562 * 18 17 15 30 30 H 1.07998 * 120.14328 * 359.95567 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -1.0796 -0.5434 5 6 4.6507 -1.0808 -0.5437 6 17 5.5138 -2.4268 -1.2201 7 6 5.3486 -0.0126 -0.0132 8 6 4.6599 1.0711 0.5380 9 6 5.4081 2.2105 1.1103 10 7 5.0273 3.4527 0.8469 11 6 5.6651 4.4930 1.3437 12 6 6.7784 4.3397 2.1594 13 6 7.2256 3.0841 2.4712 14 6 6.5335 1.9743 1.9409 15 6 6.9511 0.6603 2.2306 16 1 6.2358 -0.1487 2.2189 17 6 8.2943 0.4031 2.5338 18 7 9.2065 1.3049 2.2788 19 14 8.7826 -1.2280 3.3022 20 1 8.4013 -2.3378 2.3921 21 1 10.2509 -1.2515 3.5226 22 1 8.0837 -1.3916 4.6022 23 6 3.2656 1.0779 0.5421 24 1 2.7291 -1.9154 -0.9641 25 1 6.4286 -0.0175 -0.0204 26 1 5.3171 5.4876 1.1070 27 1 7.2873 5.2085 2.5501 28 1 8.0868 2.9460 3.1081 29 1 10.1366 1.1266 2.4884 30 1 2.7287 1.9152 0.9629 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242568511.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:42 Heat of formation + Delta-G solvation = 63.754785 kcal Electronic energy + Delta-G solvation = -18490.850583 eV Core-core repulsion = 15469.155310 eV Total energy + Delta-G solvation = -3021.695272 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.041 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.46806 -38.15751 -36.51759 -35.90355 -34.36785 -32.19853 -31.02079 -30.50009 -28.91894 -25.94017 -23.62990 -23.17561 -21.57816 -20.81239 -18.35777 -17.59768 -16.00508 -15.84549 -15.39268 -15.24198 -14.60716 -14.33279 -13.94775 -13.84750 -13.02191 -12.89424 -12.81332 -12.69064 -12.41787 -12.15507 -11.72918 -11.58804 -11.36424 -11.21530 -11.16804 -11.02020 -10.82057 -10.67355 -10.02681 -9.58208 -8.91531 -8.49109 -8.32267 -8.27237 -7.62437 -7.08770 -4.73205 1.00712 1.36586 2.27929 2.43227 2.72137 2.83914 2.90872 2.93663 3.04576 3.22137 3.68709 4.05999 4.09279 4.38164 4.99006 5.27192 5.38012 5.39619 5.65826 5.81617 5.91719 6.09181 6.22771 6.39470 6.47125 6.51879 6.68963 6.80214 6.92228 6.98278 7.03568 7.51315 7.60454 7.61094 7.70371 8.16242 8.39548 8.45525 9.35774 9.79752 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.012434 B = 0.007446 C = 0.005179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.275687 B = 3759.733969 C = 5404.785794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.270 3.730 3 C -0.031 4.031 4 C -0.085 4.085 5 C -0.041 4.041 6 Cl -0.074 7.074 7 C -0.056 4.056 8 C 0.041 3.959 9 C -0.004 4.004 10 N -0.448 5.448 11 C -0.028 4.028 12 C -0.145 4.145 13 C -0.126 4.126 14 C 0.090 3.910 15 C -0.441 4.441 16 H 0.090 0.910 17 C 0.077 3.923 18 N -0.779 5.779 19 Si 0.907 3.093 20 H -0.257 1.257 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.057 4.057 24 H 0.134 0.866 25 H 0.154 0.846 26 H 0.123 0.877 27 H 0.101 0.899 28 H 0.128 0.872 29 H 0.288 0.712 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.996 -4.049 -1.790 4.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.045 4.045 3 C -0.035 4.035 4 C -0.106 4.106 5 C -0.067 4.067 6 Cl -0.045 7.045 7 C -0.076 4.076 8 C 0.040 3.960 9 C -0.141 4.141 10 N -0.155 5.155 11 C -0.191 4.191 12 C -0.165 4.165 13 C -0.152 4.152 14 C 0.085 3.915 15 C -0.469 4.469 16 H 0.108 0.892 17 C -0.144 4.144 18 N -0.402 5.402 19 Si 0.730 3.270 20 H -0.181 1.181 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.079 4.079 24 H 0.151 0.849 25 H 0.172 0.828 26 H 0.141 0.859 27 H 0.119 0.881 28 H 0.145 0.855 29 H 0.100 0.900 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.123 -3.996 -2.377 5.601 hybrid contribution 1.751 -0.800 0.876 2.115 sum -1.372 -4.797 -1.501 5.210 Atomic orbital electron populations 1.81195 1.12047 1.08233 1.09396 1.25633 0.92522 0.93201 0.93126 1.15638 0.84062 0.97341 1.06419 1.20791 0.92060 0.97821 0.99954 1.20493 0.91585 0.91357 1.03286 1.98354 1.77062 1.45085 1.84008 1.21687 1.02262 0.90677 0.93011 1.18206 0.90967 0.92684 0.94138 1.19182 1.00938 0.89017 1.04934 1.66970 1.29581 0.98814 1.20140 1.21673 0.97539 0.95750 1.04103 1.21474 0.97617 0.97493 0.99930 1.21427 1.01447 0.91192 1.01123 1.18290 0.90101 0.94284 0.88778 1.19638 0.93870 0.94242 1.39144 0.89160 1.26014 0.96335 0.99208 0.92874 1.69731 1.02980 1.34859 1.32671 0.86326 0.78196 0.81527 0.80922 1.18083 1.19993 1.18416 1.21426 0.93800 0.96116 0.96514 0.84855 0.82827 0.85898 0.88094 0.85453 0.90035 0.84695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -7.21 18.54 41.84 0.78 -6.43 16 2 C 0.27 4.12 15.32 -22.48 -0.34 3.78 16 3 C -0.03 -0.46 5.72 -107.00 -0.61 -1.07 16 4 C -0.08 -1.18 9.53 -39.03 -0.37 -1.55 16 5 C -0.04 -0.62 6.31 -39.62 -0.25 -0.87 16 6 Cl -0.07 -1.04 28.94 -51.86 -1.50 -2.54 16 7 C -0.06 -1.00 7.59 -39.04 -0.30 -1.30 16 8 C 0.04 0.79 5.24 -104.96 -0.55 0.24 16 9 C 0.00 -0.08 6.42 -82.24 -0.53 -0.61 16 10 N -0.45 -9.90 10.15 -9.17 -0.09 -10.00 16 11 C -0.03 -0.59 11.16 -17.36 -0.19 -0.79 16 12 C -0.14 -3.00 10.03 -39.84 -0.40 -3.40 16 13 C -0.13 -2.87 8.73 -38.98 -0.34 -3.21 16 14 C 0.09 2.09 5.55 -106.41 -0.59 1.50 16 15 C -0.44 -9.82 6.77 -37.89 -0.26 -10.07 16 16 H 0.09 1.94 6.42 -52.49 -0.34 1.60 16 17 C 0.08 1.64 5.21 -17.31 -0.09 1.55 16 18 N -0.78 -17.34 10.97 55.55 0.61 -16.73 16 19 Si 0.91 16.39 29.58 -169.99 -5.03 11.36 16 20 H -0.26 -4.61 7.11 56.52 0.40 -4.21 16 21 H -0.28 -4.89 7.11 56.52 0.40 -4.49 16 22 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 23 C -0.06 -0.96 9.36 -38.73 -0.36 -1.33 16 24 H 0.13 1.55 8.06 -52.48 -0.42 1.13 16 25 H 0.15 2.94 6.76 -52.49 -0.35 2.58 16 26 H 0.12 2.21 8.06 -52.48 -0.42 1.79 16 27 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 28 H 0.13 2.94 6.34 -52.49 -0.33 2.61 16 29 H 0.29 5.87 8.29 -40.82 -0.34 5.53 16 30 H 0.14 2.26 8.06 -52.49 -0.42 1.84 16 LS Contribution 292.49 15.07 4.41 4.41 Total: -1.00 -23.77 292.49 -7.87 -31.64 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -1.85 Total: 5.44 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: -5.19 Total: -17.14 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 1.29 Total: -33.16 kcal Atomic # 14 Polarization: 16.39 SS G_CDS: -5.03 Total: 11.36 kcal Atomic # 17 Polarization: -1.04 SS G_CDS: -1.50 Total: -2.54 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -23.77 -7.87 -31.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242568511.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.392 kcal (2) G-P(sol) polarization free energy of solvation -23.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds