Wall clock time and date at job start Tue Mar 31 2020 05:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43191 * 179.97438 * 2 1 4 4 C 1.39698 * 120.08967 * 25.49501 * 3 2 1 5 5 C 1.38128 * 120.07324 * 179.97438 * 4 3 2 6 6 Cl 1.73602 * 119.87014 * 180.02562 * 5 4 3 7 7 C 1.38277 * 120.25739 * 359.97438 * 5 4 3 8 8 C 1.39395 * 120.16887 * 0.02562 * 7 5 4 9 9 C 1.48435 * 120.03578 * 179.97438 * 8 7 5 10 10 C 1.39698 * 120.40343 * 180.02562 * 9 8 7 11 11 N 1.31917 * 121.14582 * 179.97438 * 10 9 8 12 12 C 1.31518 * 122.12136 * 0.02562 * 11 10 9 13 13 C 1.40764 * 120.66648 * 359.97438 * 12 11 10 14 14 C 1.41435 * 120.60854 * 180.02562 * 13 12 11 15 15 H 1.08003 * 119.99940 * 23.39409 * 14 13 12 16 16 C 1.39937 * 120.00299 * 203.39459 * 14 13 12 17 17 N 1.30825 * 119.99525 * 17.50596 * 16 14 13 18 18 Si 1.86799 * 119.99915 * 197.50836 * 16 14 13 19 19 H 1.48500 * 109.47157 * 89.99977 * 18 16 14 20 20 H 1.48503 * 109.47008 * 209.99788 * 18 16 14 21 21 H 1.48492 * 109.47388 * 329.99618 * 18 16 14 22 22 C 1.39127 * 120.41197 * 359.97438 * 9 8 7 23 23 C 1.39086 * 119.91981 * 0.25320 * 8 7 5 24 24 H 1.07997 * 119.96136 * 0.02562 * 4 3 2 25 25 H 1.07995 * 119.91492 * 179.97438 * 7 5 4 26 26 H 1.07999 * 119.43166 * 359.97423 * 10 9 8 27 27 H 1.08007 * 119.66600 * 180.02562 * 12 11 10 28 28 H 0.97006 * 119.99857 * 179.97438 * 17 16 14 29 29 H 1.08000 * 120.94885 * 359.75110 * 22 9 8 30 30 H 1.08001 * 120.11967 * 179.72063 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2688 -1.0901 -0.5203 5 6 4.6501 -1.0889 -0.5206 6 17 5.5157 -2.4468 -1.1691 7 6 5.3460 -0.0098 -0.0074 8 6 4.6572 1.0840 0.5144 9 6 5.4072 2.2405 1.0651 10 6 4.7247 3.3404 1.5903 11 7 5.3765 4.3757 2.0839 12 6 6.6904 4.4283 2.1076 13 6 7.4608 3.3652 1.5998 14 6 8.8737 3.4228 1.6264 15 1 9.3749 4.0588 2.3411 16 6 9.6224 2.6557 0.7268 17 7 9.0533 2.1611 -0.3424 18 14 11.4341 2.3380 1.0526 19 1 11.5829 1.0950 1.8513 20 1 12.1499 2.1848 -0.2395 21 1 12.0098 3.4816 1.8047 22 6 6.7985 2.2419 1.0655 23 6 3.2664 1.0878 0.5236 24 1 2.7300 -1.9348 -0.9234 25 1 6.4260 -0.0149 -0.0100 26 1 3.6448 3.3433 1.5924 27 1 7.1833 5.2956 2.5216 28 1 9.5723 1.6296 -0.9662 29 1 7.3549 1.4046 0.6710 30 1 2.7295 1.9317 0.9312 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242569583.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:45 Heat of formation + Delta-G solvation = 63.257163 kcal Electronic energy + Delta-G solvation = -18104.963993 eV Core-core repulsion = 15083.247142 eV Total energy + Delta-G solvation = -3021.716851 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.041 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.73334 -38.23623 -36.75078 -36.17872 -34.28090 -32.76225 -31.18674 -30.48143 -28.67141 -25.92516 -24.19813 -23.17014 -21.73342 -20.85325 -18.56052 -17.28964 -16.67226 -15.88971 -15.52505 -15.20641 -14.99864 -14.22823 -14.11759 -13.90787 -13.27484 -13.10587 -12.99500 -12.87473 -12.57072 -12.20120 -11.89583 -11.55496 -11.48053 -11.42162 -11.31923 -11.06139 -10.90452 -10.68451 -10.06578 -9.58812 -9.51222 -8.80155 -8.32305 -8.09829 -7.54733 -7.03041 -4.67681 0.68385 0.99670 2.03924 2.35564 2.63260 2.65172 2.94226 2.96985 3.04648 3.11687 3.72914 3.80225 3.86631 4.43843 4.74428 4.98861 5.09621 5.27408 5.45773 5.47947 5.68870 5.80388 6.08349 6.16502 6.24654 6.30163 6.55331 6.66728 6.82067 6.90759 6.99973 7.38920 7.42603 7.63519 7.69026 8.21001 8.46910 8.49912 9.41686 9.87542 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.015769 B = 0.005437 C = 0.004091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.227557 B = 5148.207477 C = 6842.606203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.265 3.735 3 C -0.019 4.019 4 C -0.083 4.083 5 C -0.031 4.031 6 Cl -0.066 7.066 7 C -0.076 4.076 8 C 0.010 3.990 9 C -0.101 4.101 10 C -0.022 4.022 11 N -0.467 5.467 12 C -0.011 4.011 13 C 0.061 3.939 14 C -0.446 4.446 15 H 0.086 0.914 16 C 0.075 3.925 17 N -0.787 5.787 18 Si 0.913 3.087 19 H -0.265 1.265 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.111 4.111 23 C -0.068 4.068 24 H 0.138 0.862 25 H 0.149 0.851 26 H 0.123 0.877 27 H 0.129 0.871 28 H 0.286 0.714 29 H 0.135 0.865 30 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.453 -7.450 -1.703 8.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.051 4.051 3 C -0.023 4.023 4 C -0.104 4.104 5 C -0.058 4.058 6 Cl -0.037 7.037 7 C -0.095 4.095 8 C 0.009 3.991 9 C -0.103 4.103 10 C -0.180 4.180 11 N -0.174 5.174 12 C -0.172 4.172 13 C 0.056 3.944 14 C -0.475 4.475 15 H 0.104 0.896 16 C -0.144 4.144 17 N -0.412 5.412 18 Si 0.737 3.263 19 H -0.190 1.190 20 H -0.201 1.201 21 H -0.183 1.183 22 C -0.137 4.137 23 C -0.089 4.089 24 H 0.156 0.844 25 H 0.166 0.834 26 H 0.141 0.859 27 H 0.146 0.854 28 H 0.097 0.903 29 H 0.152 0.848 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -4.565 -7.006 -1.656 8.524 hybrid contribution 1.890 -1.034 -0.474 2.206 sum -2.675 -8.040 -2.131 8.737 Atomic orbital electron populations 1.81233 1.11933 1.07738 1.08827 1.25555 0.92440 0.93580 0.93496 1.15642 0.84253 0.96785 1.05582 1.20851 0.92059 0.97890 0.99609 1.20543 0.91733 0.90962 1.02573 1.98373 1.76733 1.43753 1.84882 1.21557 1.01888 0.90849 0.95226 1.18784 0.91778 0.93381 0.95140 1.19291 0.94283 0.94007 1.02746 1.21762 0.97829 0.91892 1.06506 1.66964 1.10986 1.25730 1.13717 1.22601 0.88675 0.98364 1.07593 1.18465 0.94519 0.90724 0.90667 1.19613 0.90731 1.21997 1.15154 0.89588 1.25980 1.01717 0.93356 0.93358 1.69755 1.39174 1.24902 1.07341 0.86211 0.80979 0.80154 0.78981 1.18990 1.20060 1.18343 1.21851 0.91028 0.99062 1.01711 1.21396 0.93705 0.96863 0.96890 0.84436 0.83353 0.85932 0.85355 0.90256 0.84765 0.84059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.30 18.54 41.84 0.78 -5.52 16 2 C 0.26 3.51 15.32 -22.48 -0.34 3.16 16 3 C -0.02 -0.24 5.73 -106.99 -0.61 -0.85 16 4 C -0.08 -0.98 9.52 -39.08 -0.37 -1.36 16 5 C -0.03 -0.42 6.31 -39.61 -0.25 -0.66 16 6 Cl -0.07 -0.81 28.94 -51.86 -1.50 -2.31 16 7 C -0.08 -1.17 9.21 -39.14 -0.36 -1.53 16 8 C 0.01 0.17 5.87 -104.95 -0.62 -0.44 16 9 C -0.10 -2.04 5.88 -104.82 -0.62 -2.66 16 10 C -0.02 -0.45 10.60 -16.97 -0.18 -0.63 16 11 N -0.47 -10.63 10.32 -12.29 -0.13 -10.76 16 12 C -0.01 -0.26 10.96 -16.73 -0.18 -0.44 16 13 C 0.06 1.45 5.59 -106.71 -0.60 0.85 16 14 C -0.45 -10.46 9.08 -37.73 -0.34 -10.81 16 15 H 0.09 1.93 7.90 -52.48 -0.41 1.51 16 16 C 0.08 1.67 5.18 -17.34 -0.09 1.58 16 17 N -0.79 -17.82 10.91 55.55 0.61 -17.22 16 18 Si 0.91 16.67 29.59 -169.99 -5.03 11.64 16 19 H -0.27 -4.81 7.11 56.52 0.40 -4.41 16 20 H -0.28 -4.98 7.11 56.52 0.40 -4.58 16 21 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 22 C -0.11 -2.51 8.16 -38.24 -0.31 -2.82 16 23 C -0.07 -0.95 9.14 -38.82 -0.35 -1.31 16 24 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 25 H 0.15 2.42 6.24 -52.49 -0.33 2.10 16 26 H 0.12 2.17 6.19 -52.49 -0.33 1.85 16 27 H 0.13 2.75 8.06 -52.48 -0.42 2.32 16 28 H 0.29 5.89 8.30 -40.82 -0.34 5.55 16 29 H 0.13 3.00 4.43 -52.49 -0.23 2.77 16 30 H 0.14 1.83 6.21 -52.49 -0.33 1.51 16 LS Contribution 291.58 15.07 4.39 4.39 Total: -1.00 -24.76 291.58 -7.72 -32.48 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -1.61 Total: 5.21 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -5.23 Total: -17.92 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 1.25 Total: -33.50 kcal Atomic # 14 Polarization: 16.67 SS G_CDS: -5.03 Total: 11.64 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -1.50 Total: -2.31 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -24.76 -7.72 -32.48 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242569583.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.741 kcal (2) G-P(sol) polarization free energy of solvation -24.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.484 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds