Wall clock time and date at job start Tue Mar 31 2020 05:37:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39765 * 120.07686 * 4.25524 * 3 2 1 5 5 C 1.38195 * 120.12982 * 179.72503 * 4 3 2 6 6 Cl 1.73599 * 119.85899 * 179.97438 * 5 4 3 7 7 C 1.38196 * 120.28139 * 359.97438 * 5 4 3 8 8 C 1.39673 * 120.14229 * 359.97438 * 7 5 4 9 9 C 1.47985 * 120.06201 * 179.97438 * 8 7 5 10 10 C 1.40256 * 120.34774 * 359.97438 * 9 8 7 11 11 C 1.36693 * 118.60625 * 179.97438 * 10 9 8 12 12 C 1.40867 * 119.25420 * 359.97438 * 11 10 9 13 13 C 1.40989 * 119.68243 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00335 * 0.02562 * 13 12 11 15 15 C 1.40111 * 119.99899 * 180.02562 * 13 12 11 16 16 N 1.30707 * 119.99924 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99600 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47482 * 89.99925 * 17 15 13 19 19 H 1.48508 * 109.46628 * 209.99571 * 17 15 13 20 20 H 1.48493 * 109.47450 * 329.99532 * 17 15 13 21 21 N 1.33780 * 120.63441 * 359.97438 * 12 11 10 22 22 C 1.31190 * 121.50646 * 359.76636 * 21 12 11 23 23 C 1.39347 * 120.07214 * 183.97887 * 3 2 1 24 24 H 1.08001 * 119.93143 * 359.69827 * 4 3 2 25 25 H 1.08001 * 119.92277 * 179.97438 * 7 5 4 26 26 H 1.08001 * 120.69634 * 359.97438 * 10 9 8 27 27 H 1.08003 * 120.37227 * 179.97438 * 11 10 9 28 28 H 0.97001 * 119.99872 * 180.02562 * 16 15 13 29 29 H 1.07997 * 119.65713 * 180.24243 * 22 21 12 30 30 H 1.07995 * 120.13615 * 0.25128 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2690 -1.2052 -0.0897 5 6 4.6509 -1.2054 -0.0956 6 17 5.5145 -2.7073 -0.2066 7 6 5.3483 -0.0152 -0.0133 8 6 4.6595 1.1966 0.0757 9 6 5.4081 2.4701 0.1642 10 6 6.8106 2.4694 0.1599 11 6 7.4659 3.6661 0.2427 12 6 6.7174 4.8564 0.3288 13 6 7.3841 6.0958 0.4140 14 1 8.4635 6.1296 0.4127 15 6 6.6461 7.2837 0.5004 16 7 5.3397 7.2428 0.5015 17 14 7.5295 8.9258 0.6126 18 1 7.7583 9.4593 -0.7542 19 1 6.6977 9.8835 1.3849 20 1 8.8344 8.7402 1.2964 21 7 5.3800 4.8221 0.3294 22 6 4.7232 3.6895 0.2460 23 6 3.2657 1.2039 0.0837 24 1 2.7295 -2.1386 -0.1542 25 1 6.4283 -0.0221 -0.0179 26 1 7.3613 1.5428 0.0926 27 1 8.5455 3.6988 0.2422 28 1 4.8288 8.0652 0.5609 29 1 3.6433 3.6968 0.2451 30 1 2.7287 2.1384 0.1528 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242569901.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:00 Heat of formation + Delta-G solvation = 71.495275 kcal Electronic energy + Delta-G solvation = -17798.277628 eV Core-core repulsion = 14776.918008 eV Total energy + Delta-G solvation = -3021.359620 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.041 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.53729 -38.15374 -36.68408 -36.10529 -34.11012 -32.22385 -31.21987 -30.55727 -29.07908 -25.90374 -24.06665 -22.95197 -21.64451 -20.79459 -18.38959 -17.86150 -16.43352 -15.84035 -15.43168 -15.12274 -14.55792 -14.10042 -14.04324 -13.86312 -13.18604 -13.01048 -12.95677 -12.72134 -12.49835 -12.34607 -11.93407 -11.53139 -11.30853 -11.20991 -11.14515 -11.10962 -10.94463 -10.57086 -10.22638 -9.82719 -9.13061 -8.70382 -8.46999 -7.86216 -7.48313 -6.75212 -4.81474 0.81977 1.17431 2.10336 2.42279 2.73546 2.83434 2.90720 2.91353 2.94706 3.24458 3.68840 3.93251 3.99028 4.51292 4.93989 5.17037 5.20795 5.43027 5.61221 5.64174 5.80221 5.86186 6.03513 6.24878 6.33243 6.34059 6.50554 6.70343 6.76533 6.83439 7.09167 7.31936 7.48009 7.50791 7.71956 7.87859 8.27679 8.57039 9.78074 9.93938 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.023355 B = 0.003823 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.596479 B = 7322.757359 C = 8511.508237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.426 5.426 2 C 0.265 3.735 3 C -0.005 4.005 4 C -0.114 4.114 5 C -0.017 4.017 6 Cl -0.077 7.077 7 C -0.117 4.117 8 C 0.053 3.947 9 C -0.289 4.289 10 C -0.031 4.031 11 C -0.268 4.268 12 C 0.249 3.751 13 C -0.394 4.394 14 H 0.091 0.909 15 C 0.060 3.940 16 N -0.691 5.691 17 Si 0.914 3.086 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.258 1.258 21 N -0.488 5.488 22 C 0.165 3.835 23 C -0.097 4.097 24 H 0.132 0.868 25 H 0.136 0.864 26 H 0.102 0.898 27 H 0.103 0.897 28 H 0.280 0.720 29 H 0.124 0.876 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 -8.818 -0.632 8.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.102 5.102 2 C -0.050 4.050 3 C -0.009 4.009 4 C -0.136 4.136 5 C -0.044 4.044 6 Cl -0.048 7.048 7 C -0.136 4.136 8 C 0.052 3.948 9 C -0.295 4.295 10 C -0.054 4.054 11 C -0.291 4.291 12 C 0.127 3.873 13 C -0.423 4.423 14 H 0.109 0.891 15 C -0.168 4.168 16 N -0.310 5.310 17 Si 0.737 3.263 18 H -0.190 1.190 19 H -0.197 1.197 20 H -0.182 1.182 21 N -0.199 5.199 22 C -0.006 4.006 23 C -0.118 4.118 24 H 0.150 0.850 25 H 0.153 0.847 26 H 0.119 0.881 27 H 0.121 0.879 28 H 0.092 0.908 29 H 0.142 0.858 30 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.081 -7.932 -0.562 8.025 hybrid contribution 1.331 -0.322 -0.031 1.370 sum 0.251 -8.254 -0.593 8.279 Atomic orbital electron populations 1.81216 1.12051 1.07676 1.09231 1.25668 0.92580 0.93386 0.93373 1.15644 0.83989 0.94307 1.06938 1.20667 0.91965 0.97137 1.03799 1.20485 0.91721 0.86974 1.05212 1.98356 1.77001 1.32699 1.96719 1.21269 1.00754 0.89890 1.01726 1.18632 0.91482 0.92575 0.92156 1.18855 0.93332 0.91664 1.25621 1.20642 0.92966 0.96794 0.94950 1.21446 0.99118 0.93487 1.15013 1.18693 0.88409 0.92190 0.88016 1.19925 0.94920 0.89818 1.37604 0.89094 1.26250 0.94986 1.01801 0.93811 1.70097 1.06468 1.29789 1.24665 0.86198 0.80430 0.80100 0.79563 1.19016 1.19730 1.18189 1.68817 1.08215 1.25096 1.17784 1.22780 0.98671 0.87862 0.91250 1.21323 0.93818 0.96573 1.00087 0.84983 0.84662 0.88052 0.87874 0.90830 0.85846 0.84549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.73 18.54 41.84 0.78 -5.96 16 2 C 0.27 3.75 15.32 -22.47 -0.34 3.40 16 3 C -0.01 -0.07 5.73 -106.99 -0.61 -0.68 16 4 C -0.11 -1.41 9.53 -39.03 -0.37 -1.78 16 5 C -0.02 -0.22 6.31 -39.61 -0.25 -0.47 16 6 Cl -0.08 -0.89 28.94 -51.86 -1.50 -2.39 16 7 C -0.12 -1.67 9.21 -39.06 -0.36 -2.03 16 8 C 0.05 0.86 5.87 -104.94 -0.62 0.24 16 9 C -0.29 -5.60 5.92 -104.45 -0.62 -6.22 16 10 C -0.03 -0.60 9.46 -39.38 -0.37 -0.97 16 11 C -0.27 -5.82 9.76 -39.15 -0.38 -6.20 16 12 C 0.25 6.10 6.55 -84.98 -0.56 5.55 16 13 C -0.39 -9.40 9.12 -37.84 -0.35 -9.75 16 14 H 0.09 1.99 7.85 -52.49 -0.41 1.58 16 15 C 0.06 1.37 5.50 -17.33 -0.10 1.27 16 16 N -0.69 -16.63 11.44 55.56 0.64 -15.99 16 17 Si 0.91 16.59 29.56 -169.99 -5.02 11.56 16 18 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 19 H -0.27 -4.88 7.11 56.52 0.40 -4.48 16 20 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 21 N -0.49 -12.12 7.83 -10.85 -0.08 -12.21 16 22 C 0.17 3.54 10.60 -17.13 -0.18 3.36 16 23 C -0.10 -1.42 9.14 -38.74 -0.35 -1.77 16 24 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 25 H 0.14 1.83 6.23 -52.49 -0.33 1.50 16 26 H 0.10 1.66 6.29 -52.49 -0.33 1.33 16 27 H 0.10 2.04 8.06 -52.48 -0.42 1.62 16 28 H 0.28 6.06 8.29 -40.82 -0.34 5.72 16 29 H 0.12 2.34 6.21 -52.49 -0.33 2.01 16 30 H 0.14 1.92 6.21 -52.49 -0.33 1.59 16 LS Contribution 292.84 15.07 4.41 4.41 Total: -1.00 -25.41 292.84 -7.95 -33.36 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -1.70 Total: 3.26 kcal Atomic # 6 Polarization: -10.59 SS G_CDS: -5.46 Total: -16.05 kcal Atomic # 7 Polarization: -35.48 SS G_CDS: 1.33 Total: -34.15 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -5.02 Total: 11.56 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -25.41 -7.95 -33.36 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242569901.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.854 kcal (2) G-P(sol) polarization free energy of solvation -25.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds