Wall clock time and date at job start Tue Mar 31 2020 05:36:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13595 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39764 * 120.07186 * 259.84387 * 3 2 1 5 5 C 1.38211 * 120.14500 * 179.97438 * 4 3 2 6 6 Cl 1.73601 * 119.85960 * 180.02562 * 5 4 3 7 7 C 1.38170 * 120.28443 * 0.02562 * 5 4 3 8 8 C 1.39740 * 120.13934 * 359.96346 * 7 5 4 9 9 C 1.47842 * 120.07207 * 180.02562 * 8 7 5 10 10 C 1.39669 * 120.65140 * 130.27769 * 9 8 7 11 11 C 1.38387 * 118.48088 * 180.24513 * 10 9 8 12 12 C 1.39058 * 119.72248 * 359.75285 * 11 10 9 13 13 N 1.31277 * 121.33895 * 359.97162 * 12 11 10 14 14 C 1.33701 * 121.63354 * 0.02562 * 13 12 11 15 15 C 1.40826 * 119.93903 * 179.97438 * 14 13 12 16 16 H 1.08000 * 120.00240 * 187.42287 * 15 14 13 17 17 C 1.40151 * 119.99781 * 7.43102 * 15 14 13 18 18 N 1.30689 * 119.99736 * 196.32923 * 17 15 14 19 19 Si 1.86805 * 119.99927 * 16.32742 * 17 15 14 20 20 H 1.48500 * 109.46884 * 269.99985 * 19 17 15 21 21 H 1.48496 * 109.47430 * 30.00384 * 19 17 15 22 22 H 1.48507 * 109.46856 * 150.00375 * 19 17 15 23 23 C 1.39324 * 120.06940 * 80.08424 * 3 2 1 24 24 H 1.08006 * 119.92696 * 0.02759 * 4 3 2 25 25 H 1.08001 * 119.92970 * 180.02562 * 7 5 4 26 26 H 1.08006 * 120.75352 * 359.97438 * 10 9 8 27 27 H 1.08002 * 120.13916 * 179.72415 * 11 10 9 28 28 H 1.08005 * 119.33064 * 180.02562 * 12 11 10 29 29 H 0.96997 * 120.00363 * 355.75864 * 18 17 15 30 30 H 1.08005 * 120.14484 * 359.97438 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2682 0.2142 1.1906 5 6 4.6504 0.2146 1.1924 6 17 5.5126 0.4800 2.6756 7 6 5.3488 0.0047 0.0188 8 6 4.6607 -0.2103 -1.1783 9 6 5.4095 -0.4353 -2.4330 10 6 5.1005 -1.5156 -3.2626 11 6 5.8335 -1.6866 -4.4239 12 6 6.8462 -0.7872 -4.7387 13 7 7.1254 0.2283 -3.9551 14 6 6.4517 0.4447 -2.8207 15 6 6.7815 1.5453 -2.0064 16 1 6.3230 1.6547 -1.0347 17 6 7.7047 2.4986 -2.4570 18 7 8.2527 3.3291 -1.6096 19 14 8.1520 2.5822 -4.2687 20 1 9.3138 1.6959 -4.5331 21 1 6.9943 2.1377 -5.0855 22 1 8.5036 3.9797 -4.6278 23 6 3.2662 -0.2067 -1.1877 24 1 2.7281 0.3785 2.1113 25 1 6.4287 0.0058 0.0269 26 1 4.3105 -2.2042 -3.0015 27 1 5.6202 -2.5155 -5.0827 28 1 7.4141 -0.9265 -5.6468 29 1 7.9754 3.3269 -0.6801 30 1 2.7297 -0.3687 -2.1110 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242570051.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:48 Heat of formation + Delta-G solvation = 57.211875 kcal Electronic energy + Delta-G solvation = -18517.014570 eV Core-core repulsion = 15495.035576 eV Total energy + Delta-G solvation = -3021.978994 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.041 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.67659 -38.38982 -36.65724 -36.07961 -34.09366 -32.71197 -31.31851 -30.74238 -29.00674 -25.83323 -23.76975 -23.45449 -21.45652 -20.94403 -18.62423 -18.41232 -16.22223 -15.90689 -15.61210 -15.11890 -14.89949 -14.22116 -14.04993 -13.92411 -13.16584 -12.99409 -12.93862 -12.80839 -12.68686 -12.39257 -12.12680 -11.73162 -11.47411 -11.26635 -11.02908 -10.93160 -10.65591 -10.17230 -9.97779 -9.31658 -9.15318 -8.63750 -8.56562 -8.05238 -7.78261 -7.46654 -4.98913 0.83458 1.20736 2.12674 2.30443 2.48213 2.70356 3.04528 3.44108 3.52117 3.82166 3.88369 3.94828 4.23276 4.40611 4.89337 5.14160 5.23936 5.28911 5.42778 5.58035 5.67847 5.74368 5.95925 6.09871 6.22084 6.29280 6.34263 6.61741 6.70001 6.85134 7.10396 7.20337 7.27155 7.46051 7.47881 7.85857 8.06185 8.39413 9.27839 9.75503 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.014547 B = 0.006521 C = 0.005211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.361195 B = 4292.993039 C = 5371.535554 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.428 5.428 2 C 0.267 3.733 3 C -0.022 4.022 4 C -0.089 4.089 5 C -0.034 4.034 6 Cl -0.070 7.070 7 C -0.070 4.070 8 C 0.039 3.961 9 C -0.239 4.239 10 C -0.013 4.013 11 C -0.319 4.319 12 C 0.163 3.837 13 N -0.564 5.564 14 C 0.260 3.740 15 C -0.463 4.463 16 H 0.096 0.904 17 C 0.048 3.952 18 N -0.783 5.783 19 Si 1.141 2.859 20 H -0.283 1.283 21 H -0.278 1.278 22 H -0.325 1.325 23 C -0.075 4.075 24 H 0.135 0.865 25 H 0.145 0.855 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.129 0.871 29 H 0.288 0.712 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.731 -5.476 2.856 7.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.103 5.103 2 C -0.048 4.048 3 C -0.026 4.026 4 C -0.110 4.110 5 C -0.060 4.060 6 Cl -0.041 7.041 7 C -0.090 4.090 8 C 0.037 3.963 9 C -0.244 4.244 10 C -0.037 4.037 11 C -0.342 4.342 12 C -0.003 4.003 13 N -0.281 5.281 14 C 0.139 3.861 15 C -0.493 4.493 16 H 0.114 0.886 17 C -0.177 4.177 18 N -0.402 5.402 19 Si 0.973 3.027 20 H -0.210 1.210 21 H -0.206 1.206 22 H -0.257 1.257 23 C -0.096 4.096 24 H 0.153 0.847 25 H 0.163 0.837 26 H 0.123 0.877 27 H 0.124 0.876 28 H 0.147 0.853 29 H 0.100 0.900 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.795 -4.019 1.922 5.852 hybrid contribution -1.161 -1.388 1.671 2.462 sum -4.956 -5.407 3.592 8.167 Atomic orbital electron populations 1.81212 1.11994 1.09438 1.07688 1.25625 0.92509 0.93278 0.93411 1.15631 0.84081 1.08213 0.94672 1.20802 0.92042 1.00807 0.97354 1.20553 0.91734 1.05801 0.87958 1.98364 1.76979 1.95052 1.33752 1.21609 1.01623 0.96094 0.89635 1.18445 0.91133 0.94214 0.92477 1.18967 1.04816 1.03122 0.97461 1.21003 0.95739 0.94323 0.92597 1.21105 1.05571 1.05717 1.01780 1.22285 0.92750 0.89105 0.96122 1.66860 1.31594 1.22031 1.07572 1.18425 0.87009 0.92223 0.88465 1.21028 1.20397 1.04496 1.03352 0.88604 1.27828 0.90529 0.90401 1.08930 1.70597 1.31121 1.31897 1.06591 0.82155 0.77908 0.71954 0.70719 1.20991 1.20555 1.25737 1.21431 0.93671 0.98107 0.96381 0.84723 0.83681 0.87650 0.87580 0.85311 0.90020 0.84831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.76 18.54 41.84 0.78 -5.99 16 2 C 0.27 3.82 15.32 -22.47 -0.34 3.48 16 3 C -0.02 -0.31 5.72 -106.99 -0.61 -0.92 16 4 C -0.09 -1.18 9.53 -39.02 -0.37 -1.56 16 5 C -0.03 -0.50 6.31 -39.62 -0.25 -0.75 16 6 Cl -0.07 -0.97 28.94 -51.86 -1.50 -2.47 16 7 C -0.07 -1.19 7.31 -39.05 -0.29 -1.47 16 8 C 0.04 0.67 5.07 -104.95 -0.53 0.14 16 9 C -0.24 -4.78 5.53 -104.07 -0.58 -5.36 16 10 C -0.01 -0.23 9.66 -38.99 -0.38 -0.60 16 11 C -0.32 -5.72 10.10 -39.22 -0.40 -6.12 16 12 C 0.16 3.19 11.17 -17.48 -0.20 3.00 16 13 N -0.56 -12.86 4.98 -10.91 -0.05 -12.92 16 14 C 0.26 5.96 6.30 -84.71 -0.53 5.43 16 15 C -0.46 -11.05 8.47 -37.89 -0.32 -11.37 16 16 H 0.10 2.23 5.18 -52.49 -0.27 1.96 16 17 C 0.05 1.17 5.52 -17.32 -0.10 1.08 16 18 N -0.78 -19.43 13.65 55.56 0.76 -18.67 16 19 Si 1.14 25.68 25.94 -169.99 -4.41 21.27 16 20 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 21 H -0.28 -6.30 6.52 56.52 0.37 -5.93 16 22 H -0.33 -7.28 7.11 56.52 0.40 -6.87 16 23 C -0.08 -1.14 9.25 -38.73 -0.36 -1.50 16 24 H 0.13 1.51 8.06 -52.48 -0.42 1.09 16 25 H 0.15 2.64 7.15 -52.49 -0.38 2.27 16 26 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 27 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 28 H 0.13 2.11 8.06 -52.48 -0.42 1.69 16 29 H 0.29 6.84 8.72 -40.82 -0.36 6.48 16 30 H 0.13 1.87 8.05 -52.48 -0.42 1.45 16 LS Contribution 289.36 15.07 4.36 4.36 Total: -1.00 -25.12 289.36 -7.26 -32.38 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -1.95 Total: -1.44 kcal Atomic # 6 Polarization: -11.28 SS G_CDS: -5.25 Total: -16.53 kcal Atomic # 7 Polarization: -39.06 SS G_CDS: 1.48 Total: -37.58 kcal Atomic # 14 Polarization: 25.68 SS G_CDS: -4.41 Total: 21.27 kcal Atomic # 17 Polarization: -0.97 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -25.12 -7.26 -32.38 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242570051.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.591 kcal (2) G-P(sol) polarization free energy of solvation -25.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds