Wall clock time and date at job start Tue Mar 31 2020 05:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13608 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39770 * 120.06670 * 222.63582 * 3 2 1 5 5 C 1.38211 * 120.13156 * 179.97438 * 4 3 2 6 6 Cl 1.73595 * 119.85346 * 180.02562 * 5 4 3 7 7 C 1.38172 * 120.28681 * 359.97438 * 5 4 3 8 8 C 1.39719 * 120.14473 * 0.02562 * 7 5 4 9 9 C 1.47868 * 120.07409 * 180.02562 * 8 7 5 10 10 C 1.39289 * 120.78665 * 130.01937 * 9 8 7 11 11 N 1.31672 * 120.66832 * 179.97438 * 10 9 8 12 12 C 1.32209 * 122.50281 * 0.02562 * 11 10 9 13 13 C 1.36489 * 121.50235 * 359.97438 * 12 11 10 14 14 C 1.41125 * 119.10484 * 0.02562 * 13 12 11 15 15 C 1.40931 * 121.10592 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00368 * 154.59577 * 15 14 13 17 17 C 1.40186 * 120.00267 * 334.59403 * 15 14 13 18 18 N 1.30687 * 119.99922 * 344.34605 * 17 15 14 19 19 Si 1.86796 * 120.00233 * 164.34453 * 17 15 14 20 20 H 1.48496 * 109.47395 * 89.99922 * 19 17 15 21 21 H 1.48502 * 109.47146 * 210.00194 * 19 17 15 22 22 H 1.48507 * 109.47246 * 329.99974 * 19 17 15 23 23 C 1.39331 * 120.07137 * 42.88918 * 3 2 1 24 24 H 1.07991 * 119.93432 * 359.97438 * 4 3 2 25 25 H 1.08000 * 119.92579 * 180.02562 * 7 5 4 26 26 H 1.08004 * 119.66709 * 359.97438 * 10 9 8 27 27 H 1.07996 * 119.25112 * 179.97438 * 12 11 10 28 28 H 1.08001 * 120.44904 * 179.97438 * 13 12 11 29 29 H 0.96994 * 119.99856 * 180.02562 * 18 17 15 30 30 H 1.07997 * 120.13890 * 0.02562 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2680 0.8908 0.8193 5 6 4.6501 0.8923 0.8208 6 17 5.5120 2.0005 1.8417 7 6 5.3487 0.0147 0.0140 8 6 4.6610 -0.8802 -0.8097 9 6 5.4102 -1.8191 -1.6721 10 6 5.1072 -3.1786 -1.6776 11 7 5.7755 -4.0125 -2.4468 12 6 6.7539 -3.6160 -3.2427 13 6 7.1298 -2.3058 -3.3125 14 6 6.4570 -1.3552 -2.5154 15 6 6.8102 0.0086 -2.5547 16 1 6.0824 0.7626 -2.2935 17 6 8.1061 0.3865 -2.9328 18 7 9.0659 -0.5002 -2.9520 19 14 8.4610 2.1575 -3.4091 20 1 8.8573 2.9251 -2.2013 21 1 9.5652 2.1914 -4.4015 22 1 7.2426 2.7640 -4.0034 23 6 3.2667 -0.8825 -0.8206 24 1 2.7277 1.5789 1.4525 25 1 6.4286 0.0205 0.0200 26 1 4.3161 -3.5526 -1.0445 27 1 7.2675 -4.3454 -3.8513 28 1 7.9318 -2.0007 -3.9683 29 1 9.9626 -0.2386 -3.2132 30 1 2.7304 -1.5691 -1.4588 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242570653.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:34 Heat of formation + Delta-G solvation = 61.352769 kcal Electronic energy + Delta-G solvation = -18447.599491 eV Core-core repulsion = 15425.800059 eV Total energy + Delta-G solvation = -3021.799432 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.041 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.49458 -38.18164 -36.57604 -35.98602 -34.41564 -32.44924 -30.87695 -30.40996 -28.58486 -26.25148 -23.70258 -23.12510 -21.57943 -20.84807 -18.31519 -17.74441 -16.04926 -15.83971 -15.46123 -15.00252 -14.64901 -14.42390 -14.00411 -13.90286 -13.05937 -12.85550 -12.84379 -12.77024 -12.56765 -12.40273 -11.66975 -11.58067 -11.48273 -11.26731 -11.23935 -11.01134 -10.80524 -10.50433 -10.04044 -9.65409 -8.92162 -8.57089 -8.20614 -8.07291 -7.62733 -7.09523 -4.84439 0.94843 1.31685 2.22664 2.48555 2.63972 2.77887 2.90765 2.94331 3.07522 3.16119 3.67864 3.98127 4.04839 4.41856 4.99644 5.25328 5.37313 5.39070 5.56686 5.65374 5.85562 5.98120 6.19494 6.33161 6.41933 6.59664 6.67220 6.76838 6.93388 7.00588 7.12672 7.27668 7.54377 7.60229 7.84523 8.19374 8.45172 8.47973 9.42141 9.78226 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.012259 B = 0.007192 C = 0.005203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2283.440746 B = 3892.537799 C = 5380.202233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.268 3.732 3 C -0.025 4.025 4 C -0.089 4.089 5 C -0.037 4.037 6 Cl -0.074 7.074 7 C -0.060 4.060 8 C 0.041 3.959 9 C -0.250 4.250 10 C 0.139 3.861 11 N -0.577 5.577 12 C 0.085 3.915 13 C -0.205 4.205 14 C 0.149 3.851 15 C -0.440 4.440 16 H 0.088 0.912 17 C 0.079 3.921 18 N -0.772 5.772 19 Si 0.907 3.093 20 H -0.263 1.263 21 H -0.273 1.273 22 H -0.256 1.256 23 C -0.077 4.077 24 H 0.133 0.867 25 H 0.148 0.852 26 H 0.124 0.876 27 H 0.120 0.880 28 H 0.127 0.873 29 H 0.288 0.712 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.934 4.201 4.128 6.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.047 4.047 3 C -0.029 4.029 4 C -0.111 4.111 5 C -0.064 4.064 6 Cl -0.045 7.045 7 C -0.080 4.080 8 C 0.040 3.960 9 C -0.256 4.256 10 C -0.021 4.021 11 N -0.291 5.291 12 C -0.062 4.062 13 C -0.227 4.227 14 C 0.141 3.859 15 C -0.470 4.470 16 H 0.106 0.894 17 C -0.143 4.143 18 N -0.395 5.395 19 Si 0.730 3.270 20 H -0.188 1.188 21 H -0.197 1.197 22 H -0.180 1.180 23 C -0.098 4.098 24 H 0.151 0.849 25 H 0.166 0.834 26 H 0.141 0.859 27 H 0.137 0.863 28 H 0.145 0.855 29 H 0.099 0.901 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -3.523 3.342 4.133 6.377 hybrid contribution 1.144 1.837 -0.176 2.171 sum -2.379 5.179 3.957 6.938 Atomic orbital electron populations 1.81212 1.12052 1.08618 1.08782 1.25663 0.92548 0.93261 0.93233 1.15635 0.83996 1.01089 1.02139 1.20782 0.92069 0.98870 0.99341 1.20572 0.91659 0.96258 0.97869 1.98357 1.77095 1.61906 1.67173 1.21658 1.01913 0.92401 0.92015 1.18490 0.90939 0.93618 0.92942 1.19328 1.07148 0.93140 1.05943 1.22109 0.96180 0.88891 0.94888 1.67351 1.11320 1.38770 1.11643 1.21765 0.93853 0.94465 0.96110 1.21932 1.04316 0.93365 1.03115 1.17698 0.87716 0.93477 0.87012 1.19650 0.96534 0.92574 1.38196 0.89366 1.26037 0.95817 1.00287 0.92140 1.69720 1.02238 1.36341 1.31206 0.86290 0.79496 0.81541 0.79675 1.18812 1.19742 1.17989 1.21477 0.93831 0.97341 0.97149 0.84895 0.83398 0.85873 0.86265 0.85522 0.90064 0.84846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.87 18.54 41.84 0.78 -6.10 16 2 C 0.27 3.86 15.32 -22.47 -0.34 3.51 16 3 C -0.02 -0.35 5.73 -106.99 -0.61 -0.96 16 4 C -0.09 -1.18 9.53 -39.02 -0.37 -1.55 16 5 C -0.04 -0.54 6.31 -39.62 -0.25 -0.79 16 6 Cl -0.07 -1.01 28.94 -51.86 -1.50 -2.51 16 7 C -0.06 -1.02 7.84 -39.05 -0.31 -1.32 16 8 C 0.04 0.73 4.99 -104.96 -0.52 0.20 16 9 C -0.25 -5.15 5.53 -104.04 -0.58 -5.73 16 10 C 0.14 2.84 10.71 -17.23 -0.18 2.66 16 11 N -0.58 -12.74 10.32 -13.37 -0.14 -12.87 16 12 C 0.08 1.85 11.09 -18.02 -0.20 1.65 16 13 C -0.21 -4.71 8.72 -39.12 -0.34 -5.05 16 14 C 0.15 3.39 5.59 -106.26 -0.59 2.80 16 15 C -0.44 -9.79 7.29 -37.83 -0.28 -10.07 16 16 H 0.09 1.91 6.70 -52.49 -0.35 1.55 16 17 C 0.08 1.71 5.21 -17.31 -0.09 1.62 16 18 N -0.77 -17.20 10.95 55.56 0.61 -16.59 16 19 Si 0.91 16.42 29.59 -169.99 -5.03 11.39 16 20 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 21 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 22 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 23 C -0.08 -1.17 9.25 -38.73 -0.36 -1.53 16 24 H 0.13 1.48 8.06 -52.49 -0.42 1.06 16 25 H 0.15 2.70 7.35 -52.49 -0.39 2.32 16 26 H 0.12 2.18 8.05 -52.48 -0.42 1.75 16 27 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 28 H 0.13 2.96 6.26 -52.49 -0.33 2.63 16 29 H 0.29 5.84 8.29 -40.82 -0.34 5.50 16 30 H 0.13 1.90 8.05 -52.49 -0.42 1.48 16 LS Contribution 293.58 15.07 4.42 4.42 Total: -1.00 -23.94 293.58 -7.78 -31.72 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -1.89 Total: 5.09 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -5.03 Total: -14.56 kcal Atomic # 7 Polarization: -36.80 SS G_CDS: 1.25 Total: -35.56 kcal Atomic # 14 Polarization: 16.42 SS G_CDS: -5.03 Total: 11.39 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -23.94 -7.78 -31.72 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242570653.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.076 kcal (2) G-P(sol) polarization free energy of solvation -23.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds