Wall clock time and date at job start Tue Mar 31 2020 05:37:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39695 * 120.09029 * 44.71179 * 3 2 1 5 5 C 1.38125 * 120.08647 * 180.02562 * 4 3 2 6 6 Cl 1.73594 * 119.87765 * 179.97438 * 5 4 3 7 7 C 1.38277 * 120.24942 * 359.72740 * 5 4 3 8 8 C 1.39411 * 120.17183 * 0.55401 * 7 5 4 9 9 C 1.48398 * 120.04445 * 179.72115 * 8 7 5 10 10 C 1.40032 * 120.82306 * 179.44560 * 9 8 7 11 11 C 1.38501 * 119.42422 * 180.25028 * 10 9 8 12 12 N 1.31474 * 121.14994 * 0.02680 * 11 10 9 13 13 C 1.33646 * 121.78969 * 359.97438 * 12 11 10 14 14 C 1.41426 * 119.77965 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99697 * 179.97438 * 14 13 12 16 16 C 1.40031 * 119.99959 * 359.97438 * 14 13 12 17 17 N 1.30733 * 119.99848 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99943 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.46935 * 59.99375 * 18 16 14 20 20 H 1.48497 * 109.47048 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46985 * 299.99820 * 18 16 14 22 22 C 1.39305 * 120.81992 * 359.72563 * 9 8 7 23 23 C 1.39102 * 119.91245 * 359.44242 * 8 7 5 24 24 H 1.08006 * 119.95639 * 0.02562 * 4 3 2 25 25 H 1.08005 * 119.91542 * 180.27652 * 7 5 4 26 26 H 1.08003 * 120.28539 * 0.24735 * 10 9 8 27 27 H 1.08005 * 119.42784 * 180.02562 * 11 10 9 28 28 H 0.97005 * 119.99610 * 180.02562 * 17 16 14 29 29 H 1.07997 * 120.57847 * 359.74973 * 22 9 8 30 30 H 1.08004 * 120.12010 * 180.29820 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2688 -0.8580 -0.8504 5 6 4.6500 -0.8577 -0.8499 6 17 5.5153 -1.9274 -1.9084 7 6 5.3461 -0.0049 -0.0132 8 6 4.6576 0.8523 0.8440 9 6 5.4075 1.7619 1.7452 10 6 4.7325 2.6377 2.6044 11 6 5.4614 3.4779 3.4296 12 7 6.7761 3.4679 3.4200 13 6 7.4681 2.6518 2.6192 14 6 8.8819 2.6761 2.6440 15 1 9.4446 2.0177 1.9987 16 6 9.5521 3.5536 3.5051 17 7 8.8709 4.3508 4.2858 18 14 11.4197 3.5862 3.5372 19 1 11.9317 3.9443 2.1901 20 1 11.8802 4.5943 4.5256 21 1 11.9315 2.2461 3.9211 22 6 6.8005 1.7699 1.7532 23 6 3.2666 0.8578 0.8492 24 1 2.7298 -1.5230 -1.5090 25 1 6.4262 -0.0060 -0.0205 26 1 3.6528 2.6578 2.6234 27 1 4.9408 4.1531 4.0927 28 1 9.3352 4.9590 4.8821 29 1 7.3574 1.1096 1.1049 30 1 2.7297 1.5239 1.5084 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242571011.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:31 Heat of formation + Delta-G solvation = 75.507911 kcal Electronic energy + Delta-G solvation = -17835.479082 eV Core-core repulsion = 14814.293463 eV Total energy + Delta-G solvation = -3021.185619 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.041 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.78287 -38.10656 -36.84229 -36.26814 -33.89337 -32.63969 -31.30701 -30.09513 -28.96944 -25.96337 -24.28245 -23.26893 -21.58329 -20.79432 -18.87103 -17.06877 -16.67773 -15.96349 -15.51970 -14.99484 -14.66384 -14.30915 -14.05823 -13.94379 -13.32299 -13.16960 -12.95847 -12.82571 -12.46573 -12.43368 -11.93982 -11.66859 -11.54164 -11.22632 -11.22261 -10.98179 -10.82623 -10.50899 -10.00510 -9.79652 -9.30276 -8.90505 -7.85270 -7.78536 -7.72902 -6.53203 -4.67165 0.58488 0.91597 1.93247 2.45999 2.56260 2.63579 3.02539 3.04103 3.06924 3.17815 3.72089 3.85053 3.85656 4.64377 4.64797 4.92111 4.97214 5.16637 5.36857 5.59535 5.75972 5.89160 5.97256 6.04999 6.17736 6.28241 6.51608 6.59110 6.75053 6.98517 7.14407 7.32643 7.33522 7.47152 7.80846 8.07972 8.50142 8.75365 9.96073 10.18636 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.019834 B = 0.004213 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.387425 B = 6645.183070 C = 8046.722056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C 0.263 3.737 3 C -0.019 4.019 4 C -0.080 4.080 5 C -0.033 4.033 6 Cl -0.065 7.065 7 C -0.076 4.076 8 C 0.002 3.998 9 C -0.009 4.009 10 C -0.304 4.304 11 C 0.128 3.872 12 N -0.480 5.480 13 C 0.253 3.747 14 C -0.427 4.427 15 H 0.085 0.915 16 C 0.068 3.932 17 N -0.712 5.712 18 Si 0.908 3.092 19 H -0.264 1.264 20 H -0.277 1.277 21 H -0.264 1.264 22 C -0.247 4.247 23 C -0.061 4.061 24 H 0.139 0.861 25 H 0.147 0.853 26 H 0.099 0.901 27 H 0.122 0.878 28 H 0.275 0.725 29 H 0.105 0.895 30 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.009 -7.078 -6.990 10.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.052 4.052 3 C -0.023 4.023 4 C -0.101 4.101 5 C -0.060 4.060 6 Cl -0.036 7.036 7 C -0.096 4.096 8 C 0.001 3.999 9 C -0.015 4.015 10 C -0.327 4.327 11 C -0.038 4.038 12 N -0.192 5.192 13 C 0.129 3.871 14 C -0.458 4.458 15 H 0.103 0.897 16 C -0.158 4.158 17 N -0.333 5.333 18 Si 0.732 3.268 19 H -0.188 1.188 20 H -0.201 1.201 21 H -0.188 1.188 22 C -0.270 4.270 23 C -0.082 4.082 24 H 0.157 0.843 25 H 0.165 0.835 26 H 0.117 0.883 27 H 0.139 0.861 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -5.167 -6.442 -6.369 10.429 hybrid contribution 0.796 -0.629 -0.618 1.188 sum -4.370 -7.072 -6.987 10.859 Atomic orbital electron populations 1.81241 1.11909 1.08153 1.08171 1.25540 0.92427 0.93628 0.93625 1.15668 0.84333 1.01071 1.01206 1.20882 0.92090 0.98562 0.98574 1.20539 0.91793 0.96697 0.96953 1.98377 1.76670 1.63924 1.64631 1.21508 1.01656 0.93156 0.93248 1.18884 0.91930 0.94563 0.94516 1.18404 0.93032 0.94957 0.95104 1.21311 0.98321 1.06259 1.06808 1.22480 0.91687 0.94815 0.94775 1.68733 1.05444 1.22646 1.22415 1.18544 0.93832 0.87352 0.87397 1.19637 0.90116 1.17560 1.18498 0.89661 1.26075 1.00734 0.94500 0.94465 1.70108 1.37114 1.12719 1.13327 0.86369 0.82104 0.79141 0.79175 1.18829 1.20142 1.18824 1.21868 0.92400 1.06214 1.06503 1.21449 0.93760 0.96500 0.96504 0.84326 0.83548 0.88319 0.86081 0.91353 0.87689 0.83940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.05 18.54 41.84 0.78 -5.28 16 2 C 0.26 3.34 15.32 -22.47 -0.34 2.99 16 3 C -0.02 -0.23 5.73 -106.99 -0.61 -0.84 16 4 C -0.08 -0.87 9.52 -39.08 -0.37 -1.25 16 5 C -0.03 -0.40 6.31 -39.61 -0.25 -0.65 16 6 Cl -0.06 -0.71 28.94 -51.86 -1.50 -2.21 16 7 C -0.08 -1.05 9.22 -39.13 -0.36 -1.42 16 8 C 0.00 0.02 5.87 -104.96 -0.62 -0.59 16 9 C -0.01 -0.17 5.91 -104.64 -0.62 -0.79 16 10 C -0.30 -6.02 9.51 -38.81 -0.37 -6.39 16 11 C 0.13 2.85 11.17 -17.61 -0.20 2.65 16 12 N -0.48 -12.36 7.85 -11.21 -0.09 -12.45 16 13 C 0.25 6.39 6.55 -85.02 -0.56 5.83 16 14 C -0.43 -10.65 9.14 -37.70 -0.34 -10.99 16 15 H 0.09 1.95 7.85 -52.49 -0.41 1.54 16 16 C 0.07 1.64 5.50 -17.35 -0.10 1.54 16 17 N -0.71 -18.01 11.46 55.55 0.64 -17.37 16 18 Si 0.91 17.54 29.56 -169.99 -5.02 12.52 16 19 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 20 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.26 -5.02 7.11 56.52 0.40 -4.62 16 22 C -0.25 -5.37 9.22 -38.34 -0.35 -5.73 16 23 C -0.06 -0.82 9.15 -38.82 -0.36 -1.18 16 24 H 0.14 1.22 8.06 -52.48 -0.42 0.80 16 25 H 0.15 2.01 6.27 -52.48 -0.33 1.68 16 26 H 0.10 1.66 6.32 -52.48 -0.33 1.32 16 27 H 0.12 2.39 8.06 -52.48 -0.42 1.96 16 28 H 0.28 6.32 8.29 -40.82 -0.34 5.99 16 29 H 0.11 2.05 6.32 -52.49 -0.33 1.72 16 30 H 0.14 1.80 6.28 -52.48 -0.33 1.47 16 LS Contribution 293.22 15.07 4.42 4.42 Total: -1.00 -26.84 293.22 -7.94 -34.78 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -1.71 Total: 2.40 kcal Atomic # 6 Polarization: -11.36 SS G_CDS: -5.45 Total: -16.80 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 1.32 Total: -35.10 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.02 Total: 12.52 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.50 Total: -2.21 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -26.84 -7.94 -34.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242571011.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.286 kcal (2) G-P(sol) polarization free energy of solvation -26.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds