Wall clock time and date at job start Tue Mar 31 2020 05:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.43203 * 179.97438 * 2 1 4 4 C 1.39570 * 120.45200 * 215.62290 * 3 2 1 5 5 C 1.37725 * 120.18024 * 179.74888 * 4 3 2 6 6 C 1.39814 * 121.17535 * 0.27978 * 5 4 3 7 7 C 1.48316 * 119.53488 * 179.97438 * 6 5 4 8 8 C 1.39800 * 120.91441 * 309.99445 * 7 6 5 9 9 C 1.37964 * 119.03389 * 180.02562 * 8 7 6 10 10 N 1.31932 * 120.91700 * 0.02562 * 9 8 7 11 11 C 1.31884 * 122.02449 * 359.97438 * 10 9 8 12 12 C 1.38152 * 120.86727 * 359.71573 * 11 10 9 13 13 Cl 1.73597 * 120.51051 * 180.29040 * 12 11 10 14 14 C 1.38593 * 120.92822 * 359.97438 * 6 5 4 15 15 C 1.40631 * 119.72963 * 359.97438 * 14 6 5 16 16 C 1.40837 * 120.55309 * 180.02562 * 15 14 6 17 17 H 1.07998 * 119.99819 * 150.11737 * 16 15 14 18 18 C 1.40242 * 119.99744 * 330.11297 * 16 15 14 19 19 N 1.30663 * 119.99685 * 161.90425 * 18 16 15 20 20 Si 1.86798 * 120.00186 * 341.90517 * 18 16 15 21 21 H 1.48504 * 109.47071 * 95.39306 * 20 18 16 22 22 H 1.48500 * 109.46902 * 215.38752 * 20 18 16 23 23 H 1.48497 * 109.47331 * 335.39026 * 20 18 16 24 24 H 1.07991 * 119.90696 * 0.02894 * 4 3 2 25 25 H 1.08008 * 119.41084 * 180.25841 * 5 4 3 26 26 H 1.08005 * 120.48142 * 359.97438 * 8 7 6 27 27 H 1.07999 * 119.54144 * 179.97438 * 9 8 7 28 28 H 1.08003 * 119.56704 * 180.02562 * 11 10 9 29 29 H 1.07999 * 120.13886 * 180.02562 * 14 6 5 30 30 H 0.96999 * 119.99896 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2749 0.9790 0.7008 5 6 4.6522 0.9712 0.7012 6 6 5.3707 -0.0033 0.0021 7 6 6.8534 0.0232 0.0269 8 6 7.5556 1.1983 -0.2563 9 6 8.9347 1.1789 -0.2226 10 7 9.5901 0.0722 0.0711 11 6 8.9673 -1.0577 0.3445 12 6 7.5875 -1.1257 0.3396 13 17 6.7772 -2.6161 0.7082 14 6 4.7169 -0.9937 -0.7137 15 6 3.3112 -1.0230 -0.7396 16 6 2.6290 -2.0219 -1.4610 17 1 1.6567 -2.3571 -1.1315 18 6 3.2124 -2.5810 -2.6072 19 7 2.7766 -3.7219 -3.0717 20 14 4.6123 -1.6948 -3.4699 21 1 5.9100 -2.2333 -2.9890 22 1 4.5021 -1.9045 -4.9359 23 1 4.5377 -0.2422 -3.1707 24 1 2.7405 1.7414 1.2478 25 1 5.1867 1.7318 1.2512 26 1 7.0262 2.1080 -0.4988 27 1 9.4855 2.0820 -0.4405 28 1 9.5435 -1.9403 0.5803 29 1 5.2846 -1.7405 -1.2489 30 1 3.1798 -4.1085 -3.8647 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243386319.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:53 Heat of formation + Delta-G solvation = 67.145431 kcal Electronic energy + Delta-G solvation = -18651.196358 eV Core-core repulsion = 15629.648115 eV Total energy + Delta-G solvation = -3021.548243 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.041 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.16848 -38.01821 -36.36592 -35.37550 -34.25047 -32.93375 -31.09021 -30.78450 -29.36406 -25.84608 -24.17603 -23.41696 -21.68651 -21.04977 -17.95734 -17.75476 -16.85200 -16.43212 -15.94039 -15.20308 -14.62685 -14.03560 -14.00077 -13.89642 -13.81592 -13.07127 -12.83605 -12.48282 -12.21748 -12.07160 -11.81118 -11.72068 -11.58207 -11.18011 -11.12419 -10.91130 -10.65282 -10.33755 -10.06941 -9.56804 -9.53772 -9.41873 -8.87554 -8.05168 -7.75610 -7.37634 -4.90322 0.90393 1.02504 1.89406 2.27072 2.37813 2.87436 2.96311 3.05659 3.63293 3.67111 3.76704 3.89650 4.32260 4.41347 4.65809 4.83324 4.98318 5.12498 5.19742 5.33499 5.63903 5.65581 5.82833 6.01318 6.09839 6.26822 6.43753 6.51341 6.75624 6.83873 7.15205 7.25028 7.40693 7.61392 7.84199 7.89346 8.16144 8.30684 8.65302 9.61381 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.015832 B = 0.007368 C = 0.006089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.143229 B = 3799.504181 C = 4597.136058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C 0.295 3.705 3 C -0.162 4.162 4 C -0.016 4.016 5 C -0.232 4.232 6 C -0.008 4.008 7 C 0.024 3.976 8 C -0.153 4.153 9 C 0.096 3.904 10 N -0.482 5.482 11 C 0.109 3.891 12 C -0.087 4.087 13 Cl -0.038 7.038 14 C -0.195 4.195 15 C 0.123 3.877 16 C -0.409 4.409 17 H 0.100 0.900 18 C 0.085 3.915 19 N -0.770 5.770 20 Si 0.901 3.099 21 H -0.260 1.260 22 H -0.281 1.281 23 H -0.236 1.236 24 H 0.108 0.892 25 H 0.105 0.895 26 H 0.146 0.854 27 H 0.160 0.840 28 H 0.162 0.838 29 H 0.114 0.886 30 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.570 5.270 2.727 13.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.173 5.173 2 C -0.016 4.016 3 C -0.168 4.168 4 C -0.037 4.037 5 C -0.252 4.252 6 C -0.009 4.009 7 C 0.015 3.985 8 C -0.173 4.173 9 C -0.060 4.060 10 N -0.191 5.191 11 C -0.048 4.048 12 C -0.116 4.116 13 Cl -0.009 7.009 14 C -0.214 4.214 15 C 0.117 3.883 16 C -0.435 4.435 17 H 0.118 0.882 18 C -0.140 4.140 19 N -0.391 5.391 20 Si 0.726 3.274 21 H -0.186 1.186 22 H -0.208 1.208 23 H -0.158 1.158 24 H 0.126 0.874 25 H 0.123 0.877 26 H 0.164 0.836 27 H 0.178 0.822 28 H 0.179 0.821 29 H 0.132 0.868 30 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 11.587 4.897 2.589 12.843 hybrid contribution -0.002 -0.092 -0.471 0.480 sum 11.585 4.805 2.118 12.720 Atomic orbital electron populations 1.81048 1.12633 1.10928 1.12666 1.25663 0.92618 0.91728 0.91543 1.16902 0.83458 1.01869 1.14562 1.20473 0.93449 0.95040 0.94723 1.20023 0.93093 1.02499 1.09555 1.18202 0.88185 0.96147 0.98324 1.19495 0.94631 0.91395 0.92946 1.22319 0.95089 0.98535 1.01338 1.22737 0.91601 0.96383 0.95310 1.67727 1.40362 0.98949 1.12089 1.22655 0.89521 0.96676 0.95992 1.22322 0.93964 0.89764 1.05585 1.98410 1.79236 1.30730 1.92563 1.21067 0.93828 1.00387 1.06107 1.18344 0.90444 0.89303 0.90193 1.19679 1.04963 1.12438 1.06447 0.88242 1.26352 0.97186 0.93389 0.97095 1.69586 1.36657 1.13314 1.19515 0.86423 0.80158 0.83196 0.77673 1.18580 1.20763 1.15817 0.87380 0.87684 0.83613 0.82235 0.82071 0.86818 0.89401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -11.60 18.54 41.84 0.78 -10.82 16 2 C 0.29 6.62 14.35 -22.47 -0.32 6.30 16 3 C -0.16 -3.45 5.95 -104.13 -0.62 -4.07 16 4 C -0.02 -0.29 9.74 -39.27 -0.38 -0.67 16 5 C -0.23 -3.99 9.45 -39.18 -0.37 -4.36 16 6 C -0.01 -0.14 5.17 -105.03 -0.54 -0.68 16 7 C 0.02 0.39 5.47 -104.55 -0.57 -0.19 16 8 C -0.15 -2.01 9.61 -39.10 -0.38 -2.39 16 9 C 0.10 1.14 11.17 -17.61 -0.20 0.95 16 10 N -0.48 -6.56 10.34 -13.31 -0.14 -6.69 16 11 C 0.11 1.49 10.98 -17.56 -0.19 1.30 16 12 C -0.09 -1.36 6.30 -39.00 -0.25 -1.61 16 13 Cl -0.04 -0.63 26.22 -51.86 -1.36 -1.99 16 14 C -0.19 -4.07 5.37 -38.55 -0.21 -4.27 16 15 C 0.12 2.79 5.26 -104.67 -0.55 2.24 16 16 C -0.41 -10.11 9.03 -37.85 -0.34 -10.46 16 17 H 0.10 2.68 7.65 -52.49 -0.40 2.28 16 18 C 0.08 2.01 5.41 -17.30 -0.09 1.92 16 19 N -0.77 -18.69 13.92 55.56 0.77 -17.92 16 20 Si 0.90 18.64 24.53 -169.99 -4.17 14.47 16 21 H -0.26 -5.23 6.72 56.52 0.38 -4.85 16 22 H -0.28 -5.61 7.11 56.52 0.40 -5.21 16 23 H -0.24 -4.89 6.86 56.52 0.39 -4.50 16 24 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 25 H 0.11 1.53 8.02 -52.48 -0.42 1.11 16 26 H 0.15 1.62 8.06 -52.48 -0.42 1.19 16 27 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 28 H 0.16 1.79 8.06 -52.48 -0.42 1.37 16 29 H 0.11 2.42 3.90 -52.49 -0.20 2.22 16 30 H 0.29 6.39 8.29 -40.82 -0.34 6.05 16 LS Contribution 287.59 15.07 4.33 4.33 Total: -1.00 -26.09 287.59 -6.69 -32.78 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: -1.89 Total: 1.83 kcal Atomic # 6 Polarization: -10.98 SS G_CDS: -5.01 Total: -15.99 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: 1.41 Total: -35.43 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -4.17 Total: 14.47 kcal Atomic # 17 Polarization: -0.63 SS G_CDS: -1.36 Total: -1.99 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.09 -6.69 -32.78 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243386319.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.923 kcal (2) G-P(sol) polarization free energy of solvation -26.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds