Wall clock time and date at job start Tue Mar 31 2020 05:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13593 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39769 * 120.02100 * 283.11524 * 3 2 1 5 5 C 1.37653 * 119.99475 * 179.70488 * 4 3 2 6 6 C 1.39506 * 120.05047 * 0.54650 * 5 4 3 7 7 C 1.48275 * 119.98160 * 179.72169 * 6 5 4 8 8 C 1.40095 * 120.82886 * 129.73094 * 7 6 5 9 9 C 1.38498 * 119.42270 * 180.02562 * 8 7 6 10 10 N 1.31478 * 121.14915 * 359.97438 * 9 8 7 11 11 C 1.33643 * 121.81045 * 359.97438 * 10 9 8 12 12 C 1.41421 * 119.77653 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99993 * 188.93971 * 12 11 10 14 14 C 1.40038 * 120.00181 * 8.94260 * 12 11 10 15 15 N 1.30736 * 119.99636 * 195.80027 * 14 12 11 16 16 Si 1.86799 * 119.99856 * 15.79196 * 14 12 11 17 17 H 1.48495 * 109.47643 * 270.00278 * 16 14 12 18 18 H 1.48499 * 109.46860 * 30.00590 * 16 14 12 19 19 H 1.48506 * 109.46947 * 150.00264 * 16 14 12 20 20 C 1.39359 * 120.83175 * 310.03346 * 7 6 5 21 21 C 1.39583 * 120.04069 * 359.45543 * 6 5 4 22 22 Cl 1.73595 * 120.00098 * 180.29186 * 21 6 5 23 23 C 1.37837 * 119.99785 * 0.26661 * 21 6 5 24 24 H 1.07999 * 120.00608 * 0.02562 * 4 3 2 25 25 H 1.08003 * 119.97979 * 180.27477 * 5 4 3 26 26 H 1.08004 * 120.28407 * 359.97438 * 8 7 6 27 27 H 1.07994 * 119.42861 * 179.97438 * 9 8 7 28 28 H 0.96995 * 120.00523 * 354.79192 * 15 14 12 29 29 H 1.07998 * 120.58677 * 359.96095 * 20 7 6 30 30 H 1.08002 * 120.02369 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2674 -0.2736 1.1786 5 6 4.6439 -0.2789 1.1766 6 6 5.3418 0.0007 0.0015 7 6 6.8246 0.0007 0.0025 8 6 7.5432 -0.7215 -0.9591 9 6 8.9278 -0.7015 -0.9306 10 7 9.5794 -0.0162 -0.0172 11 6 8.9421 0.6901 0.9215 12 6 9.6862 1.4122 1.8832 13 1 9.1845 1.8644 2.7260 14 6 11.0735 1.5411 1.7428 15 7 11.8003 1.9271 2.7586 16 14 11.8857 1.1612 0.1040 17 1 12.2643 -0.2740 0.0600 18 1 10.9364 1.4567 -0.9991 19 1 13.1019 1.9990 -0.0517 20 6 7.5382 0.7140 0.9638 21 6 4.6452 0.2749 -1.1766 22 17 5.5148 0.6151 -2.6400 23 6 3.2668 0.2750 -1.1780 24 1 2.7279 -0.4866 2.0897 25 1 5.1841 -0.4952 2.0865 26 1 7.0220 -1.2896 -1.7155 27 1 9.4818 -1.2585 -1.6716 28 1 11.3726 2.1967 3.5864 29 1 7.0209 1.2799 1.7245 30 1 2.7274 0.4875 -2.0892 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244329256.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:47 Heat of formation + Delta-G solvation = 59.598065 kcal Electronic energy + Delta-G solvation = -18111.923677 eV Core-core repulsion = 15090.048156 eV Total energy + Delta-G solvation = -3021.875521 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.041 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.87287 -38.46369 -36.82282 -36.21907 -34.02799 -32.96754 -31.14703 -30.46836 -29.62671 -25.65013 -24.56091 -22.96274 -21.68273 -20.82130 -19.23333 -18.44810 -16.37157 -16.03920 -15.25907 -15.07715 -14.86140 -14.34397 -14.28272 -14.00219 -13.69643 -13.20572 -13.11025 -12.91200 -12.68411 -12.43962 -12.24352 -11.77503 -11.63695 -11.49414 -11.01328 -10.83492 -10.59158 -10.07755 -9.82735 -9.38240 -9.21929 -9.01686 -8.26679 -8.08305 -7.86402 -7.35013 -4.85951 0.40816 0.99012 2.05630 2.24302 2.46151 2.49685 2.82973 3.51036 3.57688 3.62723 3.64513 3.90407 4.32963 4.45884 4.58087 4.70138 4.77986 5.10573 5.30098 5.41959 5.59065 5.64261 5.79240 5.95981 6.04897 6.16296 6.33921 6.41774 6.47028 6.82934 7.10232 7.23232 7.24267 7.36468 7.51061 7.98234 8.17921 8.53326 9.41037 9.90391 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.028145 B = 0.004497 C = 0.004048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.624970 B = 6224.349722 C = 6916.103768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C 0.262 3.738 3 C -0.035 4.035 4 C -0.064 4.064 5 C -0.100 4.100 6 C 0.023 3.977 7 C -0.004 4.004 8 C -0.285 4.285 9 C 0.148 3.852 10 N -0.566 5.566 11 C 0.249 3.751 12 C -0.476 4.476 13 H 0.082 0.918 14 C 0.049 3.951 15 N -0.799 5.799 16 Si 1.142 2.858 17 H -0.284 1.284 18 H -0.279 1.279 19 H -0.327 1.327 20 C -0.231 4.231 21 C -0.033 4.033 22 Cl -0.045 7.045 23 C -0.063 4.063 24 H 0.138 0.862 25 H 0.146 0.854 26 H 0.108 0.892 27 H 0.129 0.871 28 H 0.285 0.715 29 H 0.108 0.892 30 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.418 -3.404 -5.305 13.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.097 5.097 2 C -0.053 4.053 3 C -0.039 4.039 4 C -0.084 4.084 5 C -0.118 4.118 6 C 0.021 3.979 7 C -0.010 4.010 8 C -0.308 4.308 9 C -0.013 4.013 10 N -0.284 5.284 11 C 0.126 3.874 12 C -0.507 4.507 13 H 0.100 0.900 14 C -0.174 4.174 15 N -0.420 5.420 16 Si 0.975 3.025 17 H -0.211 1.211 18 H -0.206 1.206 19 H -0.259 1.259 20 C -0.253 4.253 21 C -0.060 4.060 22 Cl -0.015 7.015 23 C -0.084 4.084 24 H 0.156 0.844 25 H 0.163 0.837 26 H 0.126 0.874 27 H 0.147 0.853 28 H 0.096 0.904 29 H 0.126 0.874 30 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.772 -3.416 -5.996 12.793 hybrid contribution -2.068 0.173 0.867 2.249 sum -12.840 -3.244 -5.129 14.202 Atomic orbital electron populations 1.81250 1.11961 1.09144 1.07362 1.25571 0.92448 0.93515 0.93738 1.15778 0.84303 1.08704 0.95077 1.21172 0.94092 0.96478 0.96678 1.21241 0.93053 0.99490 0.98026 1.19201 0.94120 0.93342 0.91220 1.18518 0.88645 0.97588 0.96286 1.21180 0.94748 1.10863 1.03983 1.22048 0.91226 0.93637 0.94416 1.66780 1.39233 1.14397 1.08018 1.18478 0.89350 0.89835 0.89693 1.20741 0.94666 1.28126 1.07173 0.89966 1.27728 0.94753 0.90079 1.04794 1.70619 1.40356 1.27759 1.03255 0.82134 0.71985 0.76180 0.72228 1.21071 1.20593 1.25918 1.21698 0.94828 1.07103 1.01712 1.20784 0.91490 1.04692 0.89056 1.98395 1.76352 1.93264 1.33517 1.20895 0.91929 0.97896 0.97668 0.84391 0.83666 0.87421 0.85331 0.90399 0.87403 0.84097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -5.58 18.54 41.83 0.78 -4.80 16 2 C 0.26 2.96 15.32 -22.47 -0.34 2.61 16 3 C -0.03 -0.36 5.74 -106.85 -0.61 -0.98 16 4 C -0.06 -0.63 9.74 -39.22 -0.38 -1.01 16 5 C -0.10 -1.20 9.52 -39.32 -0.37 -1.57 16 6 C 0.02 0.33 5.52 -104.80 -0.58 -0.25 16 7 C 0.00 -0.08 5.11 -104.66 -0.53 -0.62 16 8 C -0.28 -5.26 8.30 -38.79 -0.32 -5.58 16 9 C 0.15 3.01 11.17 -17.61 -0.20 2.82 16 10 N -0.57 -13.47 5.02 -11.21 -0.06 -13.53 16 11 C 0.25 6.04 6.27 -85.02 -0.53 5.50 16 12 C -0.48 -12.21 9.51 -37.70 -0.36 -12.57 16 13 H 0.08 2.10 8.06 -52.49 -0.42 1.67 16 14 C 0.05 1.27 5.51 -17.34 -0.10 1.18 16 15 N -0.80 -20.92 13.65 55.55 0.76 -20.16 16 16 Si 1.14 26.82 25.94 -169.99 -4.41 22.41 16 17 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.28 -6.56 6.54 56.52 0.37 -6.19 16 19 H -0.33 -7.56 7.11 56.52 0.40 -7.16 16 20 C -0.23 -4.85 9.36 -38.32 -0.36 -5.21 16 21 C -0.03 -0.44 6.29 -39.23 -0.25 -0.68 16 22 Cl -0.04 -0.61 26.00 -51.86 -1.35 -1.96 16 23 C -0.06 -0.68 9.52 -39.18 -0.37 -1.05 16 24 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 25 H 0.15 1.65 8.05 -52.48 -0.42 1.22 16 26 H 0.11 1.76 7.21 -52.48 -0.38 1.39 16 27 H 0.13 2.23 8.06 -52.49 -0.42 1.81 16 28 H 0.28 7.10 8.73 -40.82 -0.36 6.75 16 29 H 0.11 2.11 8.06 -52.49 -0.42 1.69 16 30 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 LS Contribution 291.03 15.07 4.39 4.39 Total: -1.00 -27.37 291.03 -7.30 -34.67 By element: Atomic # 1 Polarization: -1.51 SS G_CDS: -2.10 Total: -3.61 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -5.31 Total: -17.41 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 1.48 Total: -38.49 kcal Atomic # 14 Polarization: 26.82 SS G_CDS: -4.41 Total: 22.41 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.35 Total: -1.96 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -27.37 -7.30 -34.67 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244329256.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.272 kcal (2) G-P(sol) polarization free energy of solvation -27.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds