Wall clock time and date at job start Tue Mar 31 2020 05:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13606 * 1 3 3 C 1.43201 * 179.97438 * 2 1 4 4 C 1.39773 * 120.01898 * 66.74304 * 3 2 1 5 5 C 1.37653 * 119.99831 * 180.02562 * 4 3 2 6 6 C 1.39515 * 120.04058 * 0.02562 * 5 4 3 7 7 C 1.48261 * 119.97297 * 179.97438 * 6 5 4 8 8 C 1.38955 * 119.62025 * 312.57664 * 7 6 5 9 9 C 1.40848 * 118.75926 * 179.97438 * 8 7 6 10 10 C 1.41525 * 120.98316 * 179.97438 * 9 8 7 11 11 H 1.07998 * 120.00270 * 333.07210 * 10 9 8 12 12 C 1.40054 * 119.99825 * 153.07406 * 10 9 8 13 13 N 1.30729 * 120.00272 * 160.37672 * 12 10 9 14 14 Si 1.86803 * 119.99995 * 340.38019 * 12 10 9 15 15 H 1.48504 * 109.47298 * 90.90369 * 14 12 10 16 16 H 1.48498 * 109.47295 * 210.90357 * 14 12 10 17 17 H 1.48499 * 109.47110 * 330.90425 * 14 12 10 18 18 C 1.41137 * 118.02913 * 0.02562 * 9 8 7 19 19 C 1.37777 * 119.07876 * 359.97438 * 18 9 8 20 20 N 1.31892 * 121.16008 * 359.74471 * 19 18 9 21 21 C 1.39578 * 120.04526 * 359.97438 * 6 5 4 22 22 Cl 1.73602 * 119.99953 * 180.02562 * 21 6 5 23 23 C 1.37840 * 120.00391 * 359.76444 * 21 6 5 24 24 H 1.08001 * 120.00058 * 0.02970 * 4 3 2 25 25 H 1.07991 * 119.97596 * 180.02562 * 5 4 3 26 26 H 1.07996 * 120.61643 * 0.02562 * 8 7 6 27 27 H 0.96993 * 120.00374 * 179.97438 * 13 12 10 28 28 H 1.07995 * 120.46200 * 179.97438 * 18 9 8 29 29 H 1.08002 * 119.41861 * 180.02562 * 19 18 9 30 30 H 1.07997 * 120.02709 * 180.25277 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2676 -0.4769 -1.1119 5 6 4.6441 -0.4766 -1.1112 6 6 5.3419 -0.0003 -0.0010 7 6 6.8245 -0.0012 -0.0016 8 6 7.5104 -1.1413 -0.4021 9 6 8.9187 -1.1220 -0.3962 10 6 9.6646 -2.2570 -0.7943 11 1 9.2408 -3.2450 -0.6914 12 6 10.9524 -2.0989 -1.3218 13 7 11.7828 -3.1084 -1.3326 14 14 11.4834 -0.4453 -2.0097 15 1 12.1156 0.3588 -0.9331 16 1 12.4601 -0.6567 -3.1081 17 1 10.2966 0.2766 -2.5347 18 6 9.5641 0.0624 0.0195 19 6 8.7994 1.1437 0.3993 20 7 7.4817 1.0898 0.3754 21 6 4.6451 0.4770 1.1103 22 17 5.5146 1.0700 2.4909 23 6 3.2668 0.4825 1.1095 24 1 2.7280 -0.8461 -1.9716 25 1 5.1842 -0.8453 -1.9707 26 1 6.9736 -2.0254 -0.7128 27 1 12.6745 -2.9990 -1.6982 28 1 10.6423 0.1203 0.0395 29 1 9.2875 2.0529 0.7180 30 1 2.7273 0.8555 1.9675 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244329469.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:42 Heat of formation + Delta-G solvation = 69.095185 kcal Electronic energy + Delta-G solvation = -18101.825075 eV Core-core repulsion = 15080.361379 eV Total energy + Delta-G solvation = -3021.463695 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.041 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.75780 -38.40025 -36.65288 -36.01292 -34.22792 -32.44118 -31.48982 -30.88866 -29.06382 -26.08218 -24.47120 -22.86471 -21.67646 -20.93255 -19.10164 -17.93273 -16.21664 -15.88379 -15.60057 -14.98380 -14.79421 -14.45983 -14.17073 -13.87791 -13.81868 -13.18686 -13.07599 -12.96731 -12.84861 -12.50673 -12.05230 -11.73193 -11.40087 -11.21681 -11.02634 -10.96491 -10.76759 -10.55859 -9.92756 -9.51143 -9.17667 -8.81819 -8.39077 -8.21322 -7.78308 -7.20168 -4.83852 0.52016 1.13633 2.19001 2.26099 2.47789 2.61264 2.87829 2.98207 3.07870 3.17017 3.71250 3.75007 3.78642 4.36805 4.65202 4.70775 4.89132 5.19003 5.29906 5.38815 5.68962 5.72008 5.92368 6.06917 6.20180 6.29944 6.40280 6.49693 6.55275 6.75239 6.97988 7.03116 7.32634 7.50447 7.74411 8.07949 8.29985 8.51638 9.17843 9.80632 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.026313 B = 0.004503 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.859331 B = 6216.467283 C = 6823.995468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.264 3.736 3 C -0.034 4.034 4 C -0.066 4.066 5 C -0.098 4.098 6 C 0.033 3.967 7 C 0.145 3.855 8 C -0.227 4.227 9 C 0.108 3.892 10 C -0.435 4.435 11 H 0.095 0.905 12 C 0.086 3.914 13 N -0.791 5.791 14 Si 0.917 3.083 15 H -0.265 1.265 16 H -0.289 1.289 17 H -0.247 1.247 18 C -0.288 4.288 19 C 0.122 3.878 20 N -0.546 5.546 21 C -0.018 4.018 22 Cl -0.039 7.039 23 C -0.067 4.067 24 H 0.138 0.862 25 H 0.146 0.854 26 H 0.112 0.888 27 H 0.290 0.710 28 H 0.111 0.889 29 H 0.128 0.872 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.265 4.906 0.861 9.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.051 4.051 3 C -0.038 4.038 4 C -0.087 4.087 5 C -0.117 4.117 6 C 0.030 3.970 7 C 0.014 3.986 8 C -0.250 4.250 9 C 0.100 3.900 10 C -0.465 4.465 11 H 0.113 0.887 12 C -0.136 4.136 13 N -0.414 5.414 14 Si 0.744 3.256 15 H -0.191 1.191 16 H -0.216 1.216 17 H -0.170 1.170 18 C -0.311 4.311 19 C -0.032 4.032 20 N -0.261 5.261 21 C -0.046 4.046 22 Cl -0.010 7.010 23 C -0.089 4.089 24 H 0.156 0.844 25 H 0.164 0.836 26 H 0.130 0.870 27 H 0.101 0.899 28 H 0.129 0.871 29 H 0.146 0.854 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -10.203 5.533 1.195 11.668 hybrid contribution 1.559 -0.181 -0.392 1.618 sum -8.644 5.352 0.803 10.198 Atomic orbital electron populations 1.81245 1.11991 1.09089 1.07712 1.25598 0.92470 0.93429 0.93593 1.15783 0.84228 1.07062 0.96730 1.21120 0.93989 0.96913 0.96680 1.21211 0.93096 0.99250 0.98121 1.18952 0.92903 0.93385 0.91741 1.18987 0.89923 0.91478 0.98235 1.21840 0.94450 0.98412 1.10322 1.17810 0.91565 0.92077 0.88583 1.19537 0.97425 0.94628 1.34883 0.88684 1.26232 0.95163 0.99011 0.93167 1.69642 1.06396 1.33507 1.31809 0.86265 0.79540 0.81331 0.78510 1.19111 1.21607 1.17042 1.22070 0.99725 0.97025 1.12245 1.21890 0.89320 0.96688 0.95321 1.67507 1.09576 1.26795 1.22191 1.20744 0.91262 1.01455 0.91128 1.98391 1.76473 1.86263 1.39873 1.20893 0.91978 0.98273 0.97727 0.84412 0.83585 0.87020 0.89935 0.87134 0.85420 0.84215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.83 18.54 41.84 0.78 -5.06 16 2 C 0.26 3.13 15.32 -22.47 -0.34 2.79 16 3 C -0.03 -0.38 5.74 -106.85 -0.61 -0.99 16 4 C -0.07 -0.70 9.74 -39.22 -0.38 -1.08 16 5 C -0.10 -1.25 9.40 -39.32 -0.37 -1.61 16 6 C 0.03 0.52 5.62 -104.80 -0.59 -0.07 16 7 C 0.15 2.84 5.86 -83.05 -0.49 2.35 16 8 C -0.23 -4.75 9.25 -38.33 -0.35 -5.11 16 9 C 0.11 2.50 5.18 -106.56 -0.55 1.94 16 10 C -0.43 -10.75 9.63 -37.65 -0.36 -11.11 16 11 H 0.10 2.45 8.06 -52.49 -0.42 2.03 16 12 C 0.09 2.08 5.42 -17.34 -0.09 1.98 16 13 N -0.79 -19.40 13.92 55.55 0.77 -18.63 16 14 Si 0.92 19.13 24.57 -169.99 -4.18 14.95 16 15 H -0.27 -5.35 6.44 56.52 0.36 -4.98 16 16 H -0.29 -5.81 7.11 56.52 0.40 -5.41 16 17 H -0.25 -5.31 7.04 56.52 0.40 -4.91 16 18 C -0.29 -6.40 7.43 -38.65 -0.29 -6.69 16 19 C 0.12 2.51 11.15 -17.69 -0.20 2.32 16 20 N -0.55 -11.18 8.74 -9.95 -0.09 -11.27 16 21 C -0.02 -0.27 6.32 -39.23 -0.25 -0.51 16 22 Cl -0.04 -0.61 26.89 -51.86 -1.39 -2.00 16 23 C -0.07 -0.80 9.52 -39.18 -0.37 -1.17 16 24 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 25 H 0.15 1.71 7.96 -52.49 -0.42 1.30 16 26 H 0.11 2.14 7.97 -52.49 -0.42 1.72 16 27 H 0.29 6.40 8.29 -40.82 -0.34 6.06 16 28 H 0.11 2.43 4.43 -52.49 -0.23 2.19 16 29 H 0.13 2.26 8.06 -52.49 -0.42 1.83 16 30 H 0.14 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 289.71 15.07 4.37 4.37 Total: -1.00 -26.22 289.71 -6.93 -33.15 By element: Atomic # 1 Polarization: 3.38 SS G_CDS: -1.94 Total: 1.45 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: -5.25 Total: -16.96 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 1.46 Total: -34.95 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -4.18 Total: 14.95 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.39 Total: -2.00 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -26.22 -6.93 -33.15 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244329469.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.246 kcal (2) G-P(sol) polarization free energy of solvation -26.219 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.150 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds