Wall clock time and date at job start Tue Mar 31 2020 05:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39874 * 119.99583 * 55.64112 * 3 2 1 5 5 C 1.36518 * 120.15486 * 179.74481 * 4 3 2 6 6 C 1.39838 * 120.14395 * 0.25307 * 5 4 3 7 7 C 1.47667 * 120.00783 * 180.02562 * 6 5 4 8 8 C 1.39412 * 120.79125 * 64.72699 * 7 6 5 9 9 N 1.31632 * 120.65094 * 179.74851 * 8 7 6 10 10 C 1.32232 * 122.51860 * 0.54925 * 9 8 7 11 11 C 1.36478 * 121.52731 * 359.71293 * 10 9 8 12 12 C 1.41132 * 119.10874 * 0.02562 * 11 10 9 13 13 C 1.40874 * 121.10918 * 180.02562 * 12 11 10 14 14 H 1.08004 * 119.99791 * 204.18561 * 13 12 11 15 15 C 1.40213 * 120.00208 * 24.17831 * 13 12 11 16 16 N 1.30667 * 120.00251 * 14.32325 * 15 13 12 17 17 Si 1.86804 * 120.00166 * 194.32442 * 15 13 12 18 18 H 1.48495 * 109.47218 * 0.02562 * 17 15 13 19 19 H 1.48493 * 109.47294 * 120.00438 * 17 15 13 20 20 H 1.48506 * 109.46826 * 240.00190 * 17 15 13 21 21 C 1.39964 * 119.98747 * 0.02562 * 6 5 4 22 22 Cl 1.73594 * 120.08210 * 180.02562 * 21 6 5 23 23 C 1.37749 * 119.84004 * 359.97438 * 21 6 5 24 24 H 1.07997 * 119.92061 * 0.02562 * 4 3 2 25 25 H 1.08003 * 119.92843 * 180.28183 * 5 4 3 26 26 H 1.08007 * 119.66764 * 359.97438 * 8 7 6 27 27 H 1.07997 * 119.23408 * 179.74634 * 10 9 8 28 28 H 1.07993 * 120.43930 * 180.02562 * 11 10 9 29 29 H 0.96996 * 120.00247 * 179.97438 * 16 15 13 30 30 H 1.08004 * 120.06612 * 180.02562 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2675 -0.6827 -1.0000 5 6 4.6327 -0.6799 -1.0061 6 6 5.3380 0.0018 -0.0095 7 6 6.8146 0.0034 -0.0193 8 6 7.5208 0.6120 -1.0559 9 7 8.8371 0.6161 -1.0593 10 6 9.5522 0.0452 -0.1047 11 6 8.9596 -0.5823 0.9525 12 6 7.5507 -0.6217 1.0257 13 6 6.8951 -1.2575 2.0983 14 1 5.8876 -1.6261 1.9732 15 6 7.5505 -1.4121 3.3281 16 7 8.6402 -0.7355 3.5773 17 14 6.8659 -2.5854 4.6104 18 1 5.6329 -3.2263 4.0869 19 1 7.8759 -3.6307 4.9142 20 1 6.5451 -1.8321 5.8494 21 6 4.6440 0.6828 0.9973 22 17 5.5171 1.5304 2.2354 23 6 3.2665 0.6795 1.0029 24 1 2.7264 -1.2100 -1.7717 25 1 5.1691 -1.2050 -1.7826 26 1 6.9824 1.0881 -1.8621 27 1 10.6301 0.0767 -0.1628 28 1 9.5607 -1.0425 1.7226 29 1 9.0934 -0.8421 4.4282 30 1 2.7273 1.2041 1.7779 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244329779.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:49 Heat of formation + Delta-G solvation = 66.883597 kcal Electronic energy + Delta-G solvation = -18727.528081 eV Core-core repulsion = 15705.968484 eV Total energy + Delta-G solvation = -3021.559597 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.041 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.43506 -38.11506 -36.37045 -35.61806 -34.31608 -32.41536 -30.75315 -30.28880 -28.76533 -26.19170 -23.87231 -22.44549 -21.54453 -20.69942 -18.78458 -17.73367 -15.98748 -15.67364 -15.41410 -14.64275 -14.61032 -14.45068 -13.88185 -13.58595 -13.40555 -12.84039 -12.78427 -12.56056 -12.49733 -12.25019 -11.83149 -11.53845 -11.33816 -11.16372 -11.06514 -10.85901 -10.43023 -10.23244 -9.91538 -9.53955 -8.78982 -8.44378 -8.13812 -7.92459 -7.61024 -6.99765 -4.74910 0.91401 1.50933 2.49306 2.61988 2.69966 2.92836 2.94686 2.99010 3.11379 3.16985 3.73212 4.03822 4.05606 4.51253 4.99938 5.14773 5.31324 5.48938 5.64036 5.71530 5.87508 6.02272 6.21360 6.33002 6.47833 6.64733 6.75342 6.79168 6.94059 7.02326 7.20749 7.36119 7.56625 7.68484 7.93414 8.28650 8.55056 8.58352 9.50616 9.86693 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.014556 B = 0.007502 C = 0.005809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1923.150448 B = 3731.514659 C = 4819.198895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C 0.270 3.730 3 C -0.055 4.055 4 C -0.067 4.067 5 C -0.118 4.118 6 C 0.074 3.926 7 C -0.258 4.258 8 C 0.141 3.859 9 N -0.579 5.579 10 C 0.082 3.918 11 C -0.206 4.206 12 C 0.156 3.844 13 C -0.424 4.424 14 H 0.082 0.918 15 C 0.083 3.917 16 N -0.770 5.770 17 Si 0.903 3.097 18 H -0.256 1.256 19 H -0.269 1.269 20 H -0.271 1.271 21 C -0.030 4.030 22 Cl -0.038 7.038 23 C -0.065 4.065 24 H 0.129 0.871 25 H 0.136 0.864 26 H 0.121 0.879 27 H 0.117 0.883 28 H 0.130 0.870 29 H 0.285 0.715 30 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.155 -0.353 -1.792 4.539 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.115 5.115 2 C -0.045 4.045 3 C -0.059 4.059 4 C -0.087 4.087 5 C -0.136 4.136 6 C 0.071 3.929 7 C -0.264 4.264 8 C -0.018 4.018 9 N -0.293 5.293 10 C -0.064 4.064 11 C -0.228 4.228 12 C 0.148 3.852 13 C -0.453 4.453 14 H 0.100 0.900 15 C -0.139 4.139 16 N -0.393 5.393 17 Si 0.727 3.273 18 H -0.179 1.179 19 H -0.194 1.194 20 H -0.196 1.196 21 C -0.057 4.057 22 Cl -0.008 7.008 23 C -0.087 4.087 24 H 0.147 0.853 25 H 0.154 0.846 26 H 0.139 0.861 27 H 0.135 0.865 28 H 0.147 0.853 29 H 0.097 0.903 30 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -5.137 0.177 -2.154 5.573 hybrid contribution -0.156 -0.838 1.639 1.848 sum -5.293 -0.661 -0.515 5.359 Atomic orbital electron populations 1.81203 1.12133 1.09509 1.08612 1.25699 0.92581 0.93049 0.93161 1.15756 0.83954 1.06307 0.99913 1.20772 0.94335 0.96973 0.96643 1.21016 0.92939 1.00010 0.99632 1.18885 0.93897 0.89849 0.90246 1.19308 0.89706 1.14002 1.03388 1.22024 0.90137 0.94963 0.94695 1.67321 1.07317 1.25515 1.29174 1.21733 0.98130 0.95399 0.91149 1.21981 0.95604 1.05382 0.99838 1.17586 0.91327 0.86697 0.89583 1.19552 1.00784 1.30561 0.94426 0.89974 1.25965 0.93960 0.94294 0.99694 1.69718 1.14901 1.30946 1.23777 0.86304 0.80493 0.80517 0.80022 1.17939 1.19412 1.19557 1.21006 0.91036 0.99833 0.93842 1.98396 1.76194 1.74965 1.51269 1.20887 0.92305 0.98078 0.97403 0.85290 0.84584 0.86131 0.86497 0.85282 0.90349 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.89 18.54 41.83 0.78 -6.12 16 2 C 0.27 3.80 15.32 -22.48 -0.34 3.46 16 3 C -0.06 -0.75 5.74 -106.77 -0.61 -1.37 16 4 C -0.07 -0.84 9.68 -39.59 -0.38 -1.23 16 5 C -0.12 -1.71 9.68 -39.60 -0.38 -2.10 16 6 C 0.07 1.31 4.49 -104.80 -0.47 0.84 16 7 C -0.26 -5.36 4.70 -104.05 -0.49 -5.85 16 8 C 0.14 2.92 10.92 -17.20 -0.19 2.74 16 9 N -0.58 -12.92 10.31 -13.34 -0.14 -13.06 16 10 C 0.08 1.82 11.09 -18.01 -0.20 1.62 16 11 C -0.21 -4.78 8.73 -39.12 -0.34 -5.12 16 12 C 0.16 3.57 5.11 -106.25 -0.54 3.03 16 13 C -0.42 -9.56 6.87 -37.84 -0.26 -9.82 16 14 H 0.08 1.84 7.17 -52.48 -0.38 1.47 16 15 C 0.08 1.81 5.25 -17.31 -0.09 1.72 16 16 N -0.77 -17.40 10.80 55.56 0.60 -16.80 16 17 Si 0.90 16.89 29.59 -169.99 -5.03 11.86 16 18 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 19 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 20 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 21 C -0.03 -0.52 5.76 -39.11 -0.23 -0.74 16 22 Cl -0.04 -0.71 26.21 -51.86 -1.36 -2.07 16 23 C -0.07 -0.95 9.53 -39.17 -0.37 -1.33 16 24 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 25 H 0.14 1.80 8.06 -52.48 -0.42 1.37 16 26 H 0.12 2.17 8.06 -52.48 -0.42 1.75 16 27 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 28 H 0.13 3.06 6.12 -52.49 -0.32 2.74 16 29 H 0.29 5.89 8.29 -40.82 -0.34 5.55 16 30 H 0.13 1.72 8.06 -52.48 -0.42 1.29 16 LS Contribution 291.50 15.07 4.39 4.39 Total: -1.00 -25.02 291.50 -7.61 -32.63 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -1.95 Total: 3.30 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: -4.90 Total: -14.14 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 1.24 Total: -35.97 kcal Atomic # 14 Polarization: 16.89 SS G_CDS: -5.03 Total: 11.86 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.36 Total: -2.07 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -25.02 -7.61 -32.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244329779.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.516 kcal (2) G-P(sol) polarization free energy of solvation -25.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds