Wall clock time and date at job start Tue Mar 31 2020 05:35:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13591 * 1 3 3 C 1.43207 * 179.97438 * 2 1 4 4 C 1.39854 * 119.99657 * 184.39770 * 3 2 1 5 5 C 1.36537 * 120.14664 * 179.71683 * 4 3 2 6 6 C 1.39784 * 120.14934 * 0.51697 * 5 4 3 7 7 C 1.47800 * 120.00570 * 179.76333 * 6 5 4 8 8 C 1.40350 * 120.35083 * 309.74484 * 7 6 5 9 9 C 1.36651 * 118.59966 * 179.97438 * 8 7 6 10 10 C 1.40902 * 119.26192 * 359.97438 * 9 8 7 11 11 C 1.40936 * 119.67296 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00149 * 0.02562 * 11 10 9 13 13 C 1.40140 * 119.99720 * 180.02562 * 11 10 9 14 14 N 1.30692 * 120.00467 * 0.02562 * 13 11 10 15 15 Si 1.86805 * 120.00045 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.46941 * 359.97438 * 15 13 11 17 17 H 1.48487 * 109.47139 * 120.00033 * 15 13 11 18 18 H 1.48498 * 109.46961 * 240.00492 * 15 13 11 19 19 N 1.33802 * 120.65054 * 0.02562 * 10 9 8 20 20 C 1.31164 * 121.51507 * 359.97438 * 19 10 9 21 21 C 1.39914 * 119.99400 * 359.48046 * 6 5 4 22 22 Cl 1.73602 * 120.07673 * 180.28056 * 21 6 5 23 23 C 1.37756 * 119.84872 * 0.25826 * 21 6 5 24 24 H 1.07993 * 119.92649 * 359.97438 * 4 3 2 25 25 H 1.08001 * 119.92447 * 180.27569 * 5 4 3 26 26 H 1.08003 * 120.69857 * 359.97438 * 8 7 6 27 27 H 1.07999 * 120.36979 * 180.02562 * 9 8 7 28 28 H 0.96991 * 120.00555 * 179.97438 * 14 13 11 29 29 H 1.08003 * 119.65769 * 179.72604 * 20 19 10 30 30 H 1.08007 * 120.07319 * 179.97438 * 23 21 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2666 1.2086 0.0929 5 6 4.6320 1.2123 0.0990 6 6 5.3378 0.0097 0.0015 7 6 6.8158 0.0179 0.0032 8 6 7.5212 0.8692 -0.8614 9 6 8.8872 0.8479 -0.8297 10 6 9.5419 -0.0221 0.0647 11 6 10.9504 -0.0515 0.1043 12 1 11.5225 0.5911 -0.5486 13 6 11.6085 -0.9145 0.9908 14 7 10.9163 -1.6924 1.7805 15 14 13.4754 -0.9530 1.0438 16 1 14.0187 0.0152 0.0576 17 1 13.9396 -0.5863 2.4057 18 1 13.9520 -2.3192 0.7095 19 7 8.8395 -0.8213 0.8761 20 6 7.5279 -0.8237 0.8690 21 6 4.6450 -1.2023 -0.0916 22 17 5.5194 -2.6977 -0.2053 23 6 3.2675 -1.2063 -0.0923 24 1 2.7250 2.1402 0.1641 25 1 5.1679 2.1469 0.1753 26 1 6.9955 1.5272 -1.5375 27 1 9.4586 1.4913 -1.4823 28 1 11.3718 -2.2900 2.3938 29 1 6.9911 -1.4844 1.5336 30 1 2.7290 -2.1398 -0.1644 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244330491.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:45 Heat of formation + Delta-G solvation = 73.949788 kcal Electronic energy + Delta-G solvation = -18010.841198 eV Core-core repulsion = 14989.588014 eV Total energy + Delta-G solvation = -3021.253184 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.041 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.51945 -38.09264 -36.53164 -35.92417 -34.02493 -32.17256 -30.92126 -30.61152 -29.23312 -26.13790 -23.38081 -22.85920 -21.58373 -20.81993 -18.93573 -17.70084 -16.15679 -15.88147 -15.46256 -14.85004 -14.46092 -14.25906 -13.96554 -13.73016 -13.53300 -12.93193 -12.84632 -12.64558 -12.38723 -12.25403 -11.89621 -11.41995 -11.26747 -11.17336 -11.13728 -10.99486 -10.79098 -10.37853 -10.03494 -9.64161 -8.96210 -8.69770 -8.37543 -7.75605 -7.51685 -6.64672 -4.74647 0.74934 1.33437 2.38633 2.45224 2.75401 2.89636 2.96263 2.97222 3.00345 3.15972 3.75564 3.91454 3.95290 4.51560 4.86109 5.04293 5.18483 5.44976 5.68978 5.74718 5.88252 5.93589 5.99873 6.19794 6.34185 6.45496 6.59396 6.70658 6.80469 6.86591 7.19991 7.37450 7.48050 7.53530 7.81746 7.98265 8.38611 8.68164 9.89334 10.04833 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.036587 B = 0.003937 C = 0.003685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 765.119680 B = 7110.379044 C = 7597.436897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C 0.268 3.732 3 C -0.065 4.065 4 C -0.058 4.058 5 C -0.126 4.126 6 C 0.074 3.926 7 C -0.300 4.300 8 C -0.026 4.026 9 C -0.273 4.273 10 C 0.253 3.747 11 C -0.403 4.403 12 H 0.089 0.911 13 C 0.062 3.938 14 N -0.695 5.695 15 Si 0.911 3.089 16 H -0.258 1.258 17 H -0.270 1.270 18 H -0.271 1.271 19 N -0.488 5.488 20 C 0.177 3.823 21 C -0.059 4.059 22 Cl -0.053 7.053 23 C -0.053 4.053 24 H 0.130 0.870 25 H 0.137 0.863 26 H 0.098 0.902 27 H 0.101 0.899 28 H 0.278 0.722 29 H 0.122 0.878 30 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.886 1.751 -1.766 6.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.113 5.113 2 C -0.046 4.046 3 C -0.069 4.069 4 C -0.078 4.078 5 C -0.144 4.144 6 C 0.072 3.928 7 C -0.306 4.306 8 C -0.049 4.049 9 C -0.295 4.295 10 C 0.131 3.869 11 C -0.432 4.432 12 H 0.107 0.893 13 C -0.166 4.166 14 N -0.314 5.314 15 Si 0.735 3.265 16 H -0.182 1.182 17 H -0.195 1.195 18 H -0.196 1.196 19 N -0.200 5.200 20 C 0.006 3.994 21 C -0.086 4.086 22 Cl -0.024 7.024 23 C -0.074 4.074 24 H 0.148 0.852 25 H 0.155 0.845 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.089 0.911 29 H 0.139 0.861 30 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.987 0.915 -1.061 7.126 hybrid contribution 0.765 0.355 -0.567 1.017 sum -6.221 1.271 -1.629 6.555 Atomic orbital electron populations 1.81217 1.12115 1.07679 1.10338 1.25672 0.92545 0.93393 0.92998 1.15701 0.84022 0.94433 1.12768 1.20815 0.94351 0.96279 0.96387 1.20972 0.92906 0.98196 1.02341 1.19048 0.94135 0.90273 0.89384 1.18883 0.89275 1.11508 1.10927 1.20530 0.93962 0.94937 0.95455 1.21389 0.94073 1.07220 1.06867 1.18679 0.93782 0.87316 0.87141 1.19867 0.90655 1.16859 1.15843 0.89299 1.26218 1.01170 0.94561 0.94614 1.70106 1.37337 1.12229 1.11707 0.86198 0.81568 0.79389 0.79392 1.18155 1.19540 1.19554 1.68823 1.04699 1.22653 1.23777 1.22761 0.91399 0.92021 0.93169 1.20920 0.91265 0.88353 1.08081 1.98383 1.76267 1.31273 1.96498 1.20847 0.92078 0.97251 0.97208 0.85233 0.84511 0.88397 0.88063 0.91079 0.86086 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.45 18.54 41.83 0.78 -5.67 16 2 C 0.27 3.48 15.32 -22.47 -0.34 3.13 16 3 C -0.07 -0.80 5.74 -106.78 -0.61 -1.41 16 4 C -0.06 -0.66 9.68 -39.59 -0.38 -1.04 16 5 C -0.13 -1.67 9.47 -39.62 -0.38 -2.04 16 6 C 0.07 1.20 5.50 -104.78 -0.58 0.62 16 7 C -0.30 -5.90 5.13 -104.46 -0.54 -6.44 16 8 C -0.03 -0.51 9.59 -39.36 -0.38 -0.89 16 9 C -0.27 -6.03 9.76 -39.15 -0.38 -6.42 16 10 C 0.25 6.33 6.55 -84.98 -0.56 5.78 16 11 C -0.40 -9.85 9.12 -37.85 -0.35 -10.19 16 12 H 0.09 2.01 7.85 -52.49 -0.41 1.60 16 13 C 0.06 1.46 5.50 -17.32 -0.10 1.36 16 14 N -0.69 -17.09 11.44 55.56 0.64 -16.45 16 15 Si 0.91 17.02 29.56 -169.99 -5.03 11.99 16 16 H -0.26 -4.72 7.11 56.52 0.40 -4.32 16 17 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 18 H -0.27 -5.02 7.11 56.52 0.40 -4.61 16 19 N -0.49 -12.40 7.83 -10.83 -0.08 -12.49 16 20 C 0.18 3.92 9.37 -17.11 -0.16 3.76 16 21 C -0.06 -0.89 6.28 -39.13 -0.25 -1.14 16 22 Cl -0.05 -0.86 25.98 -51.86 -1.35 -2.21 16 23 C -0.05 -0.67 9.53 -39.17 -0.37 -1.04 16 24 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 25 H 0.14 1.67 8.04 -52.49 -0.42 1.25 16 26 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 27 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 28 H 0.28 6.14 8.29 -40.82 -0.34 5.80 16 29 H 0.12 2.53 7.14 -52.48 -0.37 2.16 16 30 H 0.13 1.48 8.06 -52.48 -0.42 1.05 16 LS Contribution 294.76 15.07 4.44 4.44 Total: -1.00 -26.41 294.76 -8.00 -34.41 By element: Atomic # 1 Polarization: 3.97 SS G_CDS: -2.03 Total: 1.94 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: -5.36 Total: -15.96 kcal Atomic # 7 Polarization: -35.94 SS G_CDS: 1.33 Total: -34.61 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Atomic # 17 Polarization: -0.86 SS G_CDS: -1.35 Total: -2.21 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -26.41 -8.00 -34.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244330491.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.364 kcal (2) G-P(sol) polarization free energy of solvation -26.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds