Wall clock time and date at job start Tue Mar 31 2020 05:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39621 * 120.24755 * 49.90370 * 3 2 1 5 5 Cl 1.73600 * 120.02053 * 0.04825 * 4 3 2 6 6 C 1.38148 * 119.95781 * 180.02562 * 4 3 2 7 7 C 1.38555 * 120.46610 * 0.02562 * 6 4 3 8 8 C 1.37939 * 120.50180 * 359.70228 * 7 6 4 9 9 C 1.39561 * 120.02187 * 0.55208 * 8 7 6 10 10 C 1.47558 * 120.22812 * 179.74228 * 9 8 7 11 11 C 1.39808 * 120.65885 * 64.95868 * 10 9 8 12 12 C 1.38338 * 118.46433 * 180.26677 * 11 10 9 13 13 C 1.39098 * 119.73939 * 359.74616 * 12 11 10 14 14 N 1.31259 * 121.36264 * 359.97438 * 13 12 11 15 15 C 1.33703 * 121.64796 * 0.02562 * 14 13 12 16 16 C 1.40759 * 119.94928 * 179.97438 * 15 14 13 17 17 H 1.08002 * 120.00492 * 180.02562 * 16 15 14 18 18 C 1.40203 * 119.99584 * 359.71670 * 16 15 14 19 19 N 1.30664 * 120.00235 * 0.28142 * 18 16 15 20 20 Si 1.86803 * 119.99822 * 180.27952 * 18 16 15 21 21 H 1.48498 * 109.47174 * 90.00235 * 20 18 16 22 22 H 1.48501 * 109.47062 * 210.00186 * 20 18 16 23 23 H 1.48504 * 109.46913 * 329.99985 * 20 18 16 24 24 H 1.08007 * 119.76211 * 180.02562 * 6 4 3 25 25 H 1.08007 * 119.74676 * 179.97438 * 7 6 4 26 26 H 1.07999 * 119.98858 * 180.27453 * 8 7 6 27 27 H 1.07995 * 120.76905 * 0.02562 * 11 10 9 28 28 H 1.07999 * 120.13198 * 179.71879 * 12 11 10 29 29 H 1.07994 * 119.31604 * 180.02562 * 13 12 11 30 30 H 0.96996 * 120.00325 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2717 -0.7759 -0.9226 5 17 2.4112 -1.7462 -2.0766 6 6 4.6532 -0.7712 -0.9170 7 6 5.3493 -0.0002 0.0000 8 6 4.6735 0.7784 0.9164 9 6 3.2780 0.7851 0.9325 10 6 2.5504 1.6119 1.9145 11 6 2.6376 3.0067 1.8760 12 6 1.9411 3.7373 2.8220 13 6 1.1742 3.0770 3.7763 14 7 1.0939 1.7671 3.8012 15 6 1.7440 1.0074 2.9135 16 6 1.6330 -0.3945 2.9736 17 1 2.1580 -1.0090 2.2573 18 6 0.8460 -0.9933 3.9674 19 7 0.2112 -0.2499 4.8344 20 14 0.7049 -2.8541 4.0520 21 1 1.7776 -3.3927 4.9263 22 1 -0.6207 -3.2252 4.6092 23 1 0.8454 -3.4237 2.6878 24 1 5.1943 -1.3727 -1.6324 25 1 6.4294 -0.0056 -0.0057 26 1 5.2244 1.3795 1.6245 27 1 3.2379 3.5023 1.1274 28 1 1.9930 4.8161 2.8199 29 1 0.6330 3.6541 4.5113 30 1 -0.3336 -0.6642 5.5218 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244733604.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:13 Heat of formation + Delta-G solvation = 77.036588 kcal Electronic energy + Delta-G solvation = -19005.858185 eV Core-core repulsion = 15984.738855 eV Total energy + Delta-G solvation = -3021.119330 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.041 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.45824 -37.89119 -36.29507 -35.63294 -33.80794 -32.36321 -30.86437 -30.35254 -28.78275 -25.90662 -23.59963 -22.98953 -21.47522 -20.57057 -18.40456 -17.62350 -16.28582 -15.78408 -15.37355 -14.60063 -14.46012 -14.38436 -13.94636 -13.62384 -12.90589 -12.65173 -12.34062 -12.23411 -12.18917 -11.97603 -11.63331 -11.36198 -11.28553 -11.25513 -11.13609 -10.96798 -10.78489 -10.48155 -10.07597 -9.52336 -8.72217 -8.52794 -8.25091 -7.74581 -7.60715 -6.58653 -4.71433 1.05442 1.40665 2.19966 2.57820 2.83170 3.01655 3.05406 3.13054 3.44616 3.48279 3.84071 4.28877 4.47927 4.60539 5.01117 5.24296 5.43566 5.54541 5.65397 5.86002 5.94332 5.95981 6.19507 6.30700 6.39203 6.53542 6.64832 6.77845 6.90537 6.96943 7.16471 7.38009 7.53694 7.84136 8.04585 8.27148 8.45495 8.72702 9.92044 10.11332 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.013385 B = 0.008470 C = 0.006373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2091.347383 B = 3305.105880 C = 4392.268516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C 0.269 3.731 3 C -0.018 4.018 4 C 0.005 3.995 5 Cl -0.070 7.070 6 C -0.137 4.137 7 C -0.083 4.083 8 C -0.121 4.121 9 C 0.093 3.907 10 C -0.270 4.270 11 C -0.020 4.020 12 C -0.322 4.322 13 C 0.140 3.860 14 N -0.479 5.479 15 C 0.276 3.724 16 C -0.410 4.410 17 H 0.085 0.915 18 C 0.071 3.929 19 N -0.700 5.700 20 Si 0.899 3.101 21 H -0.264 1.264 22 H -0.272 1.272 23 H -0.257 1.257 24 H 0.134 0.866 25 H 0.132 0.868 26 H 0.134 0.866 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.121 0.879 30 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.211 -1.156 -7.025 11.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.083 5.083 2 C -0.047 4.047 3 C -0.022 4.022 4 C -0.024 4.024 5 Cl -0.041 7.041 6 C -0.156 4.156 7 C -0.101 4.101 8 C -0.139 4.139 9 C 0.089 3.911 10 C -0.275 4.275 11 C -0.044 4.044 12 C -0.345 4.345 13 C -0.030 4.030 14 N -0.189 5.189 15 C 0.153 3.847 16 C -0.440 4.440 17 H 0.103 0.897 18 C -0.157 4.157 19 N -0.320 5.320 20 Si 0.722 3.278 21 H -0.189 1.189 22 H -0.197 1.197 23 H -0.181 1.181 24 H 0.152 0.848 25 H 0.150 0.850 26 H 0.152 0.848 27 H 0.118 0.882 28 H 0.116 0.884 29 H 0.138 0.862 30 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 6.693 -1.748 -6.311 9.364 hybrid contribution 0.779 -0.392 -0.563 1.038 sum 7.472 -2.140 -6.874 10.376 Atomic orbital electron populations 1.81048 1.11962 1.07397 1.07918 1.24956 0.92184 0.94107 0.93453 1.16117 0.85444 1.02206 0.98448 1.20844 0.92479 0.95981 0.93114 1.98366 1.77418 1.69816 1.58508 1.20813 0.90955 1.02335 1.01510 1.21133 0.99990 0.95053 0.93972 1.21431 0.93051 1.00128 0.99316 1.18715 0.92053 0.90665 0.89669 1.19172 1.11972 0.92542 1.03775 1.20833 0.95553 0.92289 0.95771 1.21213 1.10910 0.98520 1.03867 1.22665 0.93473 0.92267 0.94626 1.68767 1.22174 1.03662 1.24344 1.18438 0.86484 0.93376 0.86395 1.19640 1.22855 0.90644 1.10819 0.89655 1.26108 0.94298 1.00563 0.94754 1.70067 1.16158 1.36911 1.08828 0.86418 0.78831 0.82303 0.80235 1.18882 1.19713 1.18085 0.84787 0.84989 0.84817 0.88226 0.88397 0.86195 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -9.75 18.54 41.84 0.78 -8.97 16 2 C 0.27 5.92 11.68 -22.47 -0.26 5.66 16 3 C -0.02 -0.34 4.78 -106.40 -0.51 -0.85 16 4 C 0.00 0.08 6.34 -39.10 -0.25 -0.17 16 5 Cl -0.07 -1.06 28.02 -51.86 -1.45 -2.51 16 6 C -0.14 -1.74 9.81 -39.50 -0.39 -2.13 16 7 C -0.08 -1.00 10.02 -39.57 -0.40 -1.40 16 8 C -0.12 -1.83 9.74 -39.20 -0.38 -2.21 16 9 C 0.09 1.77 4.49 -104.55 -0.47 1.30 16 10 C -0.27 -6.05 4.73 -104.11 -0.49 -6.55 16 11 C -0.02 -0.42 9.88 -38.96 -0.39 -0.80 16 12 C -0.32 -6.82 10.10 -39.23 -0.40 -7.21 16 13 C 0.14 3.26 11.17 -17.48 -0.20 3.06 16 14 N -0.48 -12.76 7.85 -10.90 -0.09 -12.85 16 15 C 0.28 7.13 6.19 -84.70 -0.52 6.60 16 16 C -0.41 -10.56 7.52 -37.89 -0.29 -10.84 16 17 H 0.09 2.11 5.88 -52.49 -0.31 1.80 16 18 C 0.07 1.78 5.50 -17.31 -0.10 1.68 16 19 N -0.70 -18.30 11.46 55.56 0.64 -17.66 16 20 Si 0.90 18.84 29.56 -169.99 -5.03 13.82 16 21 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 23 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 24 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 25 H 0.13 1.12 8.06 -52.48 -0.42 0.70 16 26 H 0.13 1.84 8.06 -52.49 -0.42 1.41 16 27 H 0.10 1.77 8.06 -52.49 -0.42 1.34 16 28 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 29 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 30 H 0.28 6.57 8.29 -40.82 -0.34 6.23 16 LS Contribution 291.23 15.07 4.39 4.39 Total: -1.00 -29.21 291.23 -7.77 -36.98 By element: Atomic # 1 Polarization: 2.64 SS G_CDS: -1.98 Total: 0.66 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -5.03 Total: -13.85 kcal Atomic # 7 Polarization: -40.81 SS G_CDS: 1.33 Total: -39.48 kcal Atomic # 14 Polarization: 18.84 SS G_CDS: -5.03 Total: 13.82 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.45 Total: -2.51 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.21 -7.77 -36.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244733604.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.016 kcal (2) G-P(sol) polarization free energy of solvation -29.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds