Wall clock time and date at job start Tue Mar 31 2020 05:35:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43198 * 179.97438 * 2 1 4 4 C 1.39675 * 120.22387 * 12.87607 * 3 2 1 5 5 Cl 1.73597 * 120.03491 * 0.04138 * 4 3 2 6 6 C 1.38113 * 119.92905 * 180.02562 * 4 3 2 7 7 C 1.38449 * 120.39115 * 0.02562 * 6 4 3 8 8 C 1.38094 * 120.45936 * 359.69979 * 7 6 4 9 9 C 1.39160 * 120.05311 * 0.55311 * 8 7 6 10 10 C 1.48218 * 120.18952 * 179.74726 * 9 8 7 11 11 C 1.40118 * 120.82814 * 129.72552 * 10 9 8 12 12 C 1.38499 * 119.41124 * 180.02562 * 11 10 9 13 13 N 1.31479 * 121.15740 * 359.97438 * 12 11 10 14 14 C 1.33637 * 121.81248 * 0.02562 * 13 12 11 15 15 C 1.41422 * 119.77094 * 179.97438 * 14 13 12 16 16 H 1.07997 * 119.99715 * 186.27818 * 15 14 13 17 17 C 1.40039 * 120.00125 * 6.00526 * 15 14 13 18 18 N 1.30731 * 120.00072 * 354.01762 * 17 15 14 19 19 Si 1.86800 * 119.99946 * 174.01090 * 17 15 14 20 20 H 1.48498 * 109.46768 * 94.98785 * 19 17 15 21 21 H 1.48503 * 109.47202 * 214.98612 * 19 17 15 22 22 H 1.48500 * 109.47364 * 334.98779 * 19 17 15 23 23 C 1.39382 * 120.83070 * 310.00080 * 10 9 8 24 24 H 1.07998 * 119.80349 * 179.97438 * 6 4 3 25 25 H 1.08002 * 119.77175 * 179.97438 * 7 6 4 26 26 H 1.07988 * 119.97151 * 180.27784 * 8 7 6 27 27 H 1.07997 * 120.29221 * 359.97438 * 11 10 9 28 28 H 1.08004 * 119.41894 * 180.02562 * 12 11 10 29 29 H 0.96997 * 120.00696 * 179.97438 * 18 17 15 30 30 H 1.08004 * 120.59133 * 359.97438 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2716 -1.1756 -0.2689 5 17 2.4110 -2.6451 -0.6059 6 6 4.6527 -1.1682 -0.2668 7 6 5.3464 -0.0004 0.0011 8 6 4.6671 1.1729 0.2636 9 6 3.2755 1.1857 0.2715 10 6 2.5433 2.4421 0.5583 11 6 1.5168 2.8838 -0.2868 12 6 0.8523 4.0625 0.0089 13 7 1.1675 4.7737 1.0688 14 6 2.1381 4.3971 1.9066 15 6 2.4418 5.1955 3.0337 16 1 3.2897 4.9506 3.6563 17 6 1.6466 6.3070 3.3392 18 7 0.6964 6.6758 2.5206 19 14 1.9435 7.2625 4.9167 20 1 2.8308 8.4194 4.6350 21 1 0.6469 7.7516 5.4506 22 1 2.5886 6.3762 5.9184 23 6 2.8626 3.2165 1.6723 24 1 5.1947 -2.0789 -0.4746 25 1 6.4264 -0.0060 0.0006 26 1 5.2161 2.0802 0.4672 27 1 1.2466 2.3108 -1.1614 28 1 0.0607 4.4029 -0.6423 29 1 0.1454 7.4454 2.7323 30 1 3.6502 2.9123 2.3459 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244734039.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:15 Heat of formation + Delta-G solvation = 76.691799 kcal Electronic energy + Delta-G solvation = -18237.480250 eV Core-core repulsion = 15216.345969 eV Total energy + Delta-G solvation = -3021.134281 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 284.041 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.75941 -38.00797 -36.60836 -36.10165 -33.84488 -32.52314 -31.19590 -30.08390 -29.05252 -25.84048 -24.03218 -23.31114 -21.35744 -20.85877 -18.87672 -17.56674 -16.17957 -15.90213 -15.38007 -14.77664 -14.70782 -14.44068 -14.09266 -13.88307 -13.21886 -12.81135 -12.64687 -12.53329 -12.47900 -12.30626 -11.83203 -11.60436 -11.45319 -11.29568 -11.22368 -10.95561 -10.88764 -10.53369 -10.05955 -9.53175 -9.10480 -8.86715 -8.02704 -7.77614 -7.69668 -6.51240 -4.63905 0.66166 1.01653 1.89709 2.64326 2.69964 2.99968 3.04292 3.06518 3.10456 3.14488 3.87510 3.91191 4.01892 4.62267 4.66619 4.90691 5.12006 5.19844 5.40566 5.67188 5.77719 5.93322 5.96749 6.18040 6.25076 6.35488 6.55342 6.60722 6.73968 7.00792 7.16879 7.36346 7.47104 7.79118 7.82175 8.11246 8.53237 8.78191 9.98821 10.21515 Molecular weight = 284.04amu Principal moments of inertia in cm(-1) A = 0.027361 B = 0.004244 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1023.123236 B = 6595.903991 C = 7103.321251 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C 0.258 3.742 3 C -0.016 4.016 4 C 0.004 3.996 5 Cl -0.062 7.062 6 C -0.125 4.125 7 C -0.079 4.079 8 C -0.107 4.107 9 C 0.047 3.953 10 C -0.021 4.021 11 C -0.295 4.295 12 C 0.130 3.870 13 N -0.478 5.478 14 C 0.253 3.747 15 C -0.428 4.428 16 H 0.086 0.914 17 C 0.068 3.932 18 N -0.712 5.712 19 Si 0.908 3.092 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.260 1.260 23 C -0.242 4.242 24 H 0.140 0.860 25 H 0.139 0.861 26 H 0.143 0.857 27 H 0.093 0.907 28 H 0.121 0.879 29 H 0.274 0.726 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.209 -10.805 -3.678 14.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.075 5.075 2 C -0.057 4.057 3 C -0.020 4.020 4 C -0.025 4.025 5 Cl -0.033 7.033 6 C -0.144 4.144 7 C -0.098 4.098 8 C -0.125 4.125 9 C 0.044 3.956 10 C -0.027 4.027 11 C -0.318 4.318 12 C -0.035 4.035 13 N -0.191 5.191 14 C 0.129 3.871 15 C -0.459 4.459 16 H 0.104 0.896 17 C -0.158 4.158 18 N -0.333 5.333 19 Si 0.732 3.268 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.184 1.184 23 C -0.265 4.265 24 H 0.158 0.842 25 H 0.157 0.843 26 H 0.160 0.840 27 H 0.111 0.889 28 H 0.138 0.862 29 H 0.086 0.914 30 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.745 -9.989 -3.528 12.558 hybrid contribution 0.854 -0.524 0.390 1.075 sum 7.599 -10.512 -3.137 13.345 Atomic orbital electron populations 1.81136 1.11732 1.07264 1.07392 1.25085 0.92270 0.93752 0.94610 1.15910 0.85234 0.93093 1.07808 1.20835 0.92582 0.86548 1.02509 1.98385 1.77211 1.34249 1.93418 1.20927 0.90979 0.99796 1.02676 1.21257 1.00500 0.91519 0.96560 1.21412 0.92654 0.99119 0.99332 1.19103 0.92959 0.91392 0.92172 1.18466 0.96011 0.91775 0.96463 1.21274 1.04107 1.02796 1.03656 1.22443 0.96043 0.90527 0.94510 1.68728 1.16565 1.30768 1.03027 1.18558 0.87723 0.89118 0.91747 1.19642 1.11168 1.07582 1.07531 0.89613 1.26082 0.94404 0.97288 0.97986 1.70119 1.11710 1.19070 1.32399 0.86303 0.78862 0.79991 0.81679 1.19385 1.19992 1.18391 1.21817 1.05938 0.98916 0.99819 0.84241 0.84323 0.83960 0.88873 0.86155 0.91428 0.87646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.40 -8.08 18.54 41.84 0.78 -7.30 16 2 C 0.26 4.78 11.78 -22.48 -0.26 4.52 16 3 C -0.02 -0.26 5.74 -106.52 -0.61 -0.87 16 4 C 0.00 0.06 6.34 -39.09 -0.25 -0.19 16 5 Cl -0.06 -0.77 28.02 -51.86 -1.45 -2.22 16 6 C -0.13 -1.26 9.81 -39.55 -0.39 -1.65 16 7 C -0.08 -0.78 10.02 -39.56 -0.40 -1.17 16 8 C -0.11 -1.39 9.53 -39.29 -0.37 -1.76 16 9 C 0.05 0.78 5.54 -104.54 -0.58 0.20 16 10 C -0.02 -0.44 5.11 -104.66 -0.53 -0.97 16 11 C -0.30 -6.53 8.57 -38.78 -0.33 -6.86 16 12 C 0.13 3.15 11.17 -17.61 -0.20 2.96 16 13 N -0.48 -12.95 7.87 -11.21 -0.09 -13.04 16 14 C 0.25 6.65 6.55 -85.02 -0.56 6.09 16 15 C -0.43 -11.00 9.14 -37.70 -0.34 -11.34 16 16 H 0.09 2.03 7.85 -52.49 -0.41 1.61 16 17 C 0.07 1.69 5.49 -17.35 -0.10 1.60 16 18 N -0.71 -18.63 11.48 55.55 0.64 -17.99 16 19 Si 0.91 18.03 29.56 -169.99 -5.03 13.00 16 20 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 23 C -0.24 -5.52 9.37 -38.31 -0.36 -5.88 16 24 H 0.14 1.01 8.06 -52.49 -0.42 0.59 16 25 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 26 H 0.14 1.72 8.05 -52.49 -0.42 1.30 16 27 H 0.09 1.94 7.35 -52.49 -0.39 1.55 16 28 H 0.12 2.65 8.06 -52.48 -0.42 2.22 16 29 H 0.27 6.50 8.29 -40.82 -0.34 6.16 16 30 H 0.11 2.17 8.06 -52.48 -0.42 1.75 16 LS Contribution 294.74 15.07 4.44 4.44 Total: -1.00 -29.26 294.74 -8.04 -37.30 By element: Atomic # 1 Polarization: 3.20 SS G_CDS: -2.05 Total: 1.15 kcal Atomic # 6 Polarization: -10.06 SS G_CDS: -5.28 Total: -15.34 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: 1.33 Total: -38.33 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.45 Total: -2.22 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -29.26 -8.04 -37.30 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244734039.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.988 kcal (2) G-P(sol) polarization free energy of solvation -29.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.297 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds